View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5001_high_7 (Length: 216)
Name: NF5001_high_7
Description: NF5001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5001_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 184; Significance: 1e-100; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 17 - 200
Target Start/End: Complemental strand, 38486983 - 38486800
Alignment:
| Q |
17 |
ccacagaaatgcataaacggtaagaacaaccatcattgtgttgaaaaagaatcccactgtggtgtagaagaatgacagcatcctgaagaaatccagtcta |
116 |
Q |
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| T |
38486983 |
ccacagaaatgcataaacggtaagaacaaccatcattgtgttgaaaaagaatcccactgtggtgtagaagaatgacagcatcctgaagaaatccagtcta |
38486884 |
T |
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| Q |
117 |
tgacccaatctatatacatctcggctcaatacttgctccccatttccactggcaaccttggcttcaaacattgatatttgattc |
200 |
Q |
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| T |
38486883 |
tgacccaatctatatacatctcggctcaatacttgctccccatttccactggcaaccttggcttcaaacattgatatttgattc |
38486800 |
T |
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Target: chr4 (Bit Score: 72; Significance: 6e-33; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 21 - 200
Target Start/End: Complemental strand, 30121378 - 30121199
Alignment:
| Q |
21 |
agaaatgcataaacggtaagaacaaccatcattgtgttgaaaaagaatcccactgtggtgtagaagaatgacagcatcctgaagaaatccagtctatgac |
120 |
Q |
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| T |
30121378 |
agaaaggcatatactgtcagaaccaccatcattgtgttgaagaagaaccccacagtagtgtagaagaatgaaagcattcggaaaaaatcaagcctatgac |
30121279 |
T |
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| Q |
121 |
ccaatctatatacatctcggctcaatacttgctccccatttccactggcaaccttggcttcaaacattgatatttgattc |
200 |
Q |
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| T |
30121278 |
ccaacctgtacacatctctgctcaggatttgttccccgttgccactagcaaccttggcttcaaacattgatacttgattc |
30121199 |
T |
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