View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5001_low_1 (Length: 519)

Name: NF5001_low_1
Description: NF5001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5001_low_1
NF5001_low_1
[»] chr2 (1 HSPs)
chr2 (14-505)||(26449858-26450349)
[»] chr4 (6 HSPs)
chr4 (11-505)||(36892401-36892895)
chr4 (295-471)||(32226472-32226649)
chr4 (343-471)||(1660634-1660764)
chr4 (348-421)||(55821485-55821558)
chr4 (295-379)||(1660187-1660262)
chr4 (431-471)||(1660258-1660299)
[»] chr7 (3 HSPs)
chr7 (11-396)||(1972440-1972825)
chr7 (275-503)||(7851423-7851651)
chr7 (113-241)||(13948072-13948198)
[»] chr3 (5 HSPs)
chr3 (274-503)||(5564442-5564671)
chr3 (19-241)||(55040230-55040452)
chr3 (153-232)||(55040003-55040082)
chr3 (349-421)||(19001438-19001509)
chr3 (220-275)||(53111911-53111966)
[»] chr1 (9 HSPs)
chr1 (11-182)||(40981014-40981185)
chr1 (19-241)||(35163076-35163298)
chr1 (161-241)||(35163437-35163517)
chr1 (19-241)||(30403001-30403223)
chr1 (19-241)||(30409558-30409780)
chr1 (19-241)||(29394156-29394378)
chr1 (153-241)||(29393929-29394017)
chr1 (113-232)||(30409293-30409410)
chr1 (153-232)||(30402774-30402853)
[»] chr5 (2 HSPs)
chr5 (61-241)||(9260773-9260951)
chr5 (153-241)||(9260500-9260588)
[»] chr8 (5 HSPs)
chr8 (19-241)||(1603964-1604185)
chr8 (19-241)||(11143831-11144053)
chr8 (19-227)||(44551873-44552080)
chr8 (153-232)||(11144201-11144280)
chr8 (113-241)||(1661447-1661573)
[»] chr6 (2 HSPs)
chr6 (153-217)||(32445859-32445923)
chr6 (178-227)||(14986954-14987002)
[»] scaffold1243 (1 HSPs)
scaffold1243 (357-471)||(1-116)


Alignment Details
Target: chr2 (Bit Score: 472; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 14 - 505
Target Start/End: Complemental strand, 26450349 - 26449858
Alignment:
Q  14 aggacaaaggctaggcataaaacaaaagtgcagcacccaaaagcacaaacaacactacggttcctaatgacattaaccataaacctgatacctaaaaacc 113  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  26450349 aggacaaaggctaggcataaaacaaaagtgcagcacccaaaagtacaaacaacactacggttcctaatgacagtaaccataaacctgatacctaaaaacc 26450250  T
Q  114 agcagcctcacgcagccaaccttgaggcaccaaaacaaacctgctgcccctcgagggcacaccgcaaaatacagaaaccacttcgacaaagtccaccaaa 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  26450249 agcagcctcacgcagccaaccttgaggcaccaaaacaaacctgctgcccctcgagggcacaccgcaaaagacagaaaccacttcgacaaagtccaccaaa 26450150  T
Q  214 actaccactattttctcaacagacaatcattcgggttccaacaccattcgtagtacaaacaatggtagatgcactatatggacacaaagcagacatagaa 313  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  26450149 actaccactattttctcaacagacaatcgttcgggttccaacaccattcgtagtacaaacaatggtagatgcactatatgcacacaaagcagacatagaa 26450050  T
Q  314 actgcagcagcaaaaactcttgcccaaaccacaacaatgcaatgaaaggcgtagaaatagtcatgaaattttttgtcgatgcactttgaatcagccatca 413  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26450049 actgcagcagcaaaaactcttgcccaaaccacaacaatgcaatgaaaggcgtagaaatagtcatgaaattttttgtcgatgcactttgaatcagccatca 26449950  T
Q  414 catatcagagcacacaacatgaccaaatcaaagcacttaattacaaaacaaatctttcgcatggaatatgtattcaatgctcacatcaatat 505  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26449949 catatcagagcacacaacatgaccaaatcaaagcacttaattacaaaacaaatctttcgcatggaatatgtattcaatgctcacatcaatat 26449858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 431; Significance: 0; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 11 - 505
Target Start/End: Complemental strand, 36892895 - 36892401
Alignment:
Q  11 caaaggacaaaggctaggcataaaacaaaagtgcagcacccaaaagcacaaacaacactacggttcctaatgacattaaccataaacctgatacctaaaa 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||||    
T  36892895 caaaggacaaaggctaggcataaaacaaaagtgcagcacccaaaagcacaaacaacactacggttcctaatgacagtaaccataaacctgctaactaaaa 36892796  T
Q  111 accagcagcctcacgcagccaaccttgaggcaccaaaacaaacctgctgcccctcgagggcacaccgcaaaatacagaaaccacttcgacaaagtccacc 210  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  36892795 accagcaacctcacgcagccaaccttgaggcaccaaaacaaacctgctgcccctcgagggcacaccgcaaaagacagaaaccacttcgacaaagtccacc 36892696  T
Q  211 aaaactaccactattttctcaacagacaatcattcgggttccaacaccattcgtagtacaaacaatggtagatgcactatatggacacaaagcagacata 310  Q
    ||||||| ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| | ||||||||||||||    
T  36892695 aaaactatcactattttctcaacagacaatcgttcgggttccaacaccatttgtagtacaaacaatggtagatgcactatatgcaaacaaagcagacata 36892596  T
Q  311 gaaactgcagcagcaaaaactcttgcccaaaccacaacaatgcaatgaaaggcgtagaaatagtcatgaaattttttgtcgatgcactttgaatcagcca 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||    
T  36892595 gaaactgcagcagcaaaaactcttgcccaaaccacaacaatgcaatgaaaggcgtagaaatagtcatgaaaatctttgtcgatgcactttgaatcagcca 36892496  T
Q  411 tcacatatcagagcacacaacatgaccaaatcaaagcacttaattacaaaacaaatctttcgcatggaatatgtattcaatgctcacatcaatat 505  Q
    |||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  36892495 tcacatatcatagcacacagcatgaccaaatcaaagcgcttaattacaaaacaaatctttcgcatggaatatgtattcaatgcacacatcaatat 36892401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 295 - 471
Target Start/End: Original strand, 32226472 - 32226649
Alignment:
Q  295 acacaaagcagacatagaaactgcagcagcaaaaactcttgcccaaaccacaacaatgcaatgaaaggcgtagaaatagtcatgaaattttttgtcgatg 394  Q
    ||||||||||||||| ||||||||  | |||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||   ||||||||||    
T  32226472 acacaaagcagacatcgaaactgcgccggcaaaaactcttgcccaaaccacaacaatgcaatgaaaggtgtagaaacagtcatgaaaaaatttgtcgatg 32226571  T
Q  395 cactttgaatcagccatcacatatcagagcacacaacatgaccaaatcaaagcacttaatta-caaaacaaatctttc 471  Q
    || | ||||||| || ||| | |||| |||||||||||||||||||||||||| |||||||| |||||||||||||||    
T  32226572 caatgtgaatcaaccttcagaaatcaaagcacacaacatgaccaaatcaaagcgcttaattagcaaaacaaatctttc 32226649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 343 - 471
Target Start/End: Original strand, 1660634 - 1660764
Alignment:
Q  343 cacaacaatgcaatgaaaggcgtagaaatagtcatgaaatttttt-gtcgatgcactttgaatcagccatcacatatcagagcacacaacatgaccaaat 441  Q
    ||||||||||||||||||||| |||||| | ||||||| |||||| || |||||| | |||||| ||| |||||||||||| ||||||||||||||||||    
T  1660634 cacaacaatgcaatgaaaggcatagaaacaatcatgaattttttttgtagatgcaatgtgaatcggccttcacatatcagatcacacaacatgaccaaat 1660733  T
Q  442 caaagcacttaatta-caaaacaaatctttc 471  Q
    |||||| |||||||| |||||||||||||||    
T  1660734 caaagcgcttaattaccaaaacaaatctttc 1660764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 348 - 421
Target Start/End: Original strand, 55821485 - 55821558
Alignment:
Q  348 caatgcaatgaaaggcgtagaaatagtcatgaaattttttgtcgatgcactttgaatcagccatcacatatcag 421  Q
    ||||||||||||||||||||||| ||||||||||    ||||||||||||| |||||||||| ||||| |||||    
T  55821485 caatgcaatgaaaggcgtagaaacagtcatgaaaaaaattgtcgatgcactgtgaatcagccttcacagatcag 55821558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 295 - 379
Target Start/End: Original strand, 1660187 - 1660262
Alignment:
Q  295 acacaaagcagacatagaaactgcagcagcaaaaactcttgcccaaaccacaacaatgcaatgaaaggcgtagaaatagtcatga 379  Q
    |||||||||||||||||||||||| |  ||||||||||||         ||||||||||||||||||||||||||| ||||||||    
T  1660187 acacaaagcagacatagaaactgcggtggcaaaaactctt---------acaacaatgcaatgaaaggcgtagaaacagtcatga 1660262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 431 - 471
Target Start/End: Original strand, 1660258 - 1660299
Alignment:
Q  431 catgaccaaatcaaagcacttaatta-caaaacaaatctttc 471  Q
    ||||||||||||||||| |||||||| |||||||||||||||    
T  1660258 catgaccaaatcaaagcgcttaattagcaaaacaaatctttc 1660299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 338; Significance: 0; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 11 - 396
Target Start/End: Complemental strand, 1972825 - 1972440
Alignment:
Q  11 caaaggacaaaggctaggcataaaacaaaagtgcagcacccaaaagcacaaacaacactacggttcctaatgacattaaccataaacctgatacctaaaa 110  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||    
T  1972825 caaaggacaaaggctagacataaaacaaaagtgcagcacccaaaagcacaaacaacactacggttcctaatgacagtaaccataaacctgctacctaaaa 1972726  T
Q  111 accagcagcctcacgcagccaaccttgaggcaccaaaacaaacctgctgcccctcgagggcacaccgcaaaatacagaaaccacttcgacaaagtccacc 210  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||| ||||||||||    
T  1972725 accagcaacctcacgcagccaaccttgaggcaccaaaacaaacctgctgcccctcgagggcacaccgcaaaggacagaaaccacttcgaaaaagtccacc 1972626  T
Q  211 aaaactaccactattttctcaacagacaatcattcgggttccaacaccattcgtagtacaaacaatggtagatgcactatatggacacaaagcagacata 310  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  1972625 aaaactaccactattttctcaacagacaatcgttcgggttccaacaccattcgtagtacaaacaatggtagatgcactatatgcacacaaagcagacata 1972526  T
Q  311 gaaactgcagcagcaaaaactcttgcccaaaccacaacaatgcaatgaaaggcgtagaaatagtcatgaaattttttgtcgatgca 396  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||    
T  1972525 gaaactgcagcagcgaaaactcttgcccaaaccacaacaatgcaatgaaaggcgtagaaatagtcatgaaaatctttgtcgatgca 1972440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 275 - 503
Target Start/End: Complemental strand, 7851651 - 7851423
Alignment:
Q  275 atggtagatgcactatatggacacaaagcagacatagaaactgcagcagcaaaaactcttgcccaaaccacaacaatgcaatgaaaggcgtagaaatagt 374  Q
    |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| | |||||||||||| ||| ||||||||| |||||||||||||    
T  7851651 atggtatatgcactatatgcacacaaagcagacatagaaactgcagcagcaaaaactttggcccaaaccacagcaaagcaatgaaaagcgtagaaatagt 7851552  T
Q  375 catgaaattttttgtcgatgcactttgaatcagccatcacatatcagagcacacaacatgaccaaatcaaagcacttaatta-caaaacaaatctttcgc 473  Q
    |||||||   || ||||||||||||||||||||||||||||||||||| || | |||||||||||||||| || |||||||| |||||||||||||||||    
T  7851551 catgaaa-aattcgtcgatgcactttgaatcagccatcacatatcagaacatataacatgaccaaatcaatgcgcttaattaccaaaacaaatctttcgc 7851453  T
Q  474 atggaatatgtattcaatgctcacatcaat 503  Q
    |||||||||||||||||| |||||||||||    
T  7851452 atggaatatgtattcaattctcacatcaat 7851423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 113 - 241
Target Start/End: Complemental strand, 13948198 - 13948072
Alignment:
Q  113 cagcagcctcacgcagccaaccttgaggcaccaaaacaaacctgctgcccctcgagggcacaccgcaaaatacagaaaccacttcgacaaagtccaccaa 212  Q
    ||||| |||||||||||||||   ||||||||| |   | ||||||| ||||||||  |||||| ||||| ||| ||||||| |||||||||||| ||||    
T  13948198 cagcaccctcacgcagccaacacagaggcaccacac--agcctgctgtccctcgagaacacaccacaaaaaacataaaccacctcgacaaagtcccccaa 13948101  T
Q  213 aactaccactattttctcaacagacaatc 241  Q
    ||||| ||||||||||||||  |||||||    
T  13948100 aactatcactattttctcaaaggacaatc 13948072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 163; Significance: 8e-87; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 163; E-Value: 8e-87
Query Start/End: Original strand, 274 - 503
Target Start/End: Original strand, 5564442 - 5564671
Alignment:
Q  274 aatggtagatgcactatatggacacaaagcagacatagaaactgcagcagcaaaaactcttgcccaaaccacaacaatgcaatgaaaggcgtagaaatag 373  Q
    ||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  5564442 aatggtatatgcactatatgcacacaaagcagacatagaaactgcagcagcaaaaacttttgcccaaaccacaacaatgcaatgaaaggcgtagaaatag 5564541  T
Q  374 tcatgaaattttttgtcgatgcactttgaatcagccatcacatatcagagcacacaacatgaccaaatcaaagcacttaatta-caaaacaaatctttcg 472  Q
    ||||||||   || ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || |||||||| ||||||||||||||||    
T  5564542 tcatgaaa-aattcgtcgatgcactttgaatcagccatcacatatcagaacacacaacatgaccaaatcaatgcgcttaattaccaaaacaaatctttcg 5564640  T
Q  473 catggaatatgtattcaatgctcacatcaat 503  Q
    ||| ||||||||||||||   ||||||||||    
T  5564641 catagaatatgtattcaactatcacatcaat 5564671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 19 - 241
Target Start/End: Original strand, 55040230 - 55040452
Alignment:
Q  19 aaaggctaggcataaaacaaaagtgcagca--cccaaaagcacaaacaacactacggttcctaatgacattaaccataaacctgatacctaaaa-accag 115  Q
    |||||||||||| |||||||||| || |||  ||| ||| ||| |||| ||| |||||||||| |||||  ||||| ||||||| || |||||| | |||    
T  55040230 aaaggctaggcacaaaacaaaagagctgcagcccctaaaacaccaacatcacaacggttcctagtgacag-aaccaaaaacctgctatctaaaatagcag 55040328  T
Q  116 cagcctcacgcagccaaccttgaggcaccaaaacaaacctgctgcccctcgagggcacaccgcaaaatacagaaaccacttcgacaaagtccaccaaaac 215  Q
    ||||||||||||||||||   || |||| | |   | ||||||||||||| ||  |||||| ||||| ||||||||||| ||||||||||  |||||||     
T  55040329 cagcctcacgcagccaacaaagatgcactacac--agcctgctgcccctcaagaacacaccacaaaaaacagaaaccacctcgacaaagtataccaaaaa 55040426  T
Q  216 taccactattttctcaacagacaatc 241  Q
    || |||||||||||||| ||||||||    
T  55040427 tatcactattttctcaaaagacaatc 55040452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 153 - 232
Target Start/End: Original strand, 55040003 - 55040082
Alignment:
Q  153 cctgctgcccctcgagggcacaccgcaaaatacagaaaccacttcgacaaagtccaccaaaactaccactattttctcaa 232  Q
    ||||||| |||||||| ||||||| ||||| ||| ||||||| |||||||||||||||||||||| ||||||||||||||    
T  55040003 cctgctgtccctcgagagcacaccacaaaaaacataaaccacctcgacaaagtccaccaaaactatcactattttctcaa 55040082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 349 - 421
Target Start/End: Original strand, 19001438 - 19001509
Alignment:
Q  349 aatgcaatgaaaggcgtagaaatagtcatgaaattttttgtcgatgcactttgaatcagccatcacatatcag 421  Q
    |||||||||||||||||||||| ||||||||||   |||||||||||||| |||||||||| ||||| |||||    
T  19001438 aatgcaatgaaaggcgtagaaacagtcatgaaa-aatttgtcgatgcactgtgaatcagccttcacagatcag 19001509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 220 - 275
Target Start/End: Original strand, 53111911 - 53111966
Alignment:
Q  220 actattttctcaacagacaatcattcgggttccaacaccattcgtagtacaaacaa 275  Q
    |||||||||||||||| ||||||||||| ||||||| |||||||||||||| ||||    
T  53111911 actattttctcaacaggcaatcattcggattccaactccattcgtagtacagacaa 53111966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 152; Significance: 3e-80; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 11 - 182
Target Start/End: Original strand, 40981014 - 40981185
Alignment:
Q  11 caaaggacaaaggctaggcataaaacaaaagtgcagcacccaaaagcacaaacaacactacggttcctaatgacattaaccataaacctgatacctaaaa 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |||||||||    
T  40981014 caaaggacaaaggctaggcataaaacaaaagtgcagcacccaaaagcacaaacaacactacggttcctaatgacagtaatcataaacctgctacctaaaa 40981113  T
Q  111 accagcagcctcacgcagccaaccttgaggcaccaaaacaaacctgctgcccctcgagggcacaccgcaaaa 182  Q
    ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  40981114 accagcaccctcacgcagccaaccttgaggcaccaaaacaaacatgctgcccctcgagggcacaccgcaaaa 40981185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 19 - 241
Target Start/End: Complemental strand, 35163298 - 35163076
Alignment:
Q  19 aaaggctaggcataaaacaaaag---tgcagcacccaaaagcacaaacaacactacggttcctaatgacattaaccataaacctgatacctaaaa-acca 114  Q
    |||||||||||| ||||||||||   |||||| || |||| ||| |||| ||| |||||||||| |||||  ||||| ||||||| || |||||| | ||    
T  35163298 aaaggctaggcacaaaacaaaagaggtgcagcccctaaaa-caccaacatcacaacggttcctagtgacag-aaccaaaaacctgctatctaaaatagca 35163201  T
Q  115 gcagcctcacgcagccaaccttgaggcaccaaaacaaacctgctgcccctcgagggcacaccgcaaaatacagaaaccacttcgacaaagtccaccaaaa 214  Q
    |||||||||||||||||||   || |||| | |   | ||||||||||||| ||  |||||| ||||| ||||||||||| ||||||||||  |||||||    
T  35163200 gcagcctcacgcagccaacaaagatgcactacac--agcctgctgcccctcaagaacacaccacaaaaaacagaaaccacctcgacaaagtataccaaaa 35163103  T
Q  215 ctaccactattttctcaacagacaatc 241  Q
    ||| |||||||||||||| ||||||||    
T  35163102 ctatcactattttctcaaaagacaatc 35163076  T

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Target: chr1; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 161 - 241
Target Start/End: Complemental strand, 35163517 - 35163437
Alignment:
Q  161 ccctcgagggcacaccgcaaaatacagaaaccacttcgacaaagtccaccaaaactaccactattttctcaacagacaatc 241  Q
    |||||||| ||||||| ||||| ||| |||||||||||||||||||||||||||||| ||||||||||||||  |||||||    
T  35163517 ccctcgagagcacaccacaaaaaacataaaccacttcgacaaagtccaccaaaactatcactattttctcaaaggacaatc 35163437  T

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Target: chr1; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 19 - 241
Target Start/End: Original strand, 30403001 - 30403223
Alignment:
Q  19 aaaggctaggcataaaacaaaag---tgcagcacccaaaagcacaaacaacactacggttcctaatgacattaaccataaacctgatacctaaaa-acca 114  Q
    |||||||||||| ||||||||||   |||||| || |||| ||| |||| ||| |||||||||| | |||  ||||| ||| ||| || |||||| | ||    
T  30403001 aaaggctaggcacaaaacaaaagaggtgcagcccctaaaa-caccaacatcacaacggttcctagtaacaa-aaccaaaaatctgctatctaaaatagca 30403098  T
Q  115 gcagcctcacgcagccaaccttgaggcaccaaaacaaacctgctgcccctcgagggcacaccgcaaaatacagaaaccacttcgacaaagtccaccaaaa 214  Q
    |||||||||||||||||||   || |||| | |   | ||||||||||||| ||  |||||| ||||| ||||||||||| ||||||||||  |||||||    
T  30403099 gcagcctcacgcagccaacaaagatgcactacac--agcctgctgcccctcaagaacacaccacaaaaaacagaaaccacctcgacaaagtataccaaaa 30403196  T
Q  215 ctaccactattttctcaacagacaatc 241  Q
    ||| |||||||||||||| ||||||||    
T  30403197 ctatcactattttctcaaaagacaatc 30403223  T

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Target: chr1; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 19 - 241
Target Start/End: Original strand, 30409558 - 30409780
Alignment:
Q  19 aaaggctaggcataaaacaaaag---tgcagcacccaaaagcacaaacaacactacggttcctaatgacattaaccataaacctgatacctaaaa-acca 114  Q
    |||||||||||| ||||||||||   |||||| || |||| ||| |||| ||| |||||||||| | |||  ||||| ||| ||| || |||||| | ||    
T  30409558 aaaggctaggcacaaaacaaaagaggtgcagcccctaaaa-caccaacatcacaacggttcctagtaacaa-aaccaaaaatctgctatctaaaatagca 30409655  T
Q  115 gcagcctcacgcagccaaccttgaggcaccaaaacaaacctgctgcccctcgagggcacaccgcaaaatacagaaaccacttcgacaaagtccaccaaaa 214  Q
    |||||||||||||||||||   || |||| | |   | ||||||||||||| ||  |||||| ||||| ||||||||||| ||||||||||  |||||||    
T  30409656 gcagcctcacgcagccaacaaagatgcactacac--agcctgctgcccctcaagaacacaccacaaaaaacagaaaccacctcgacaaagtataccaaaa 30409753  T
Q  215 ctaccactattttctcaacagacaatc 241  Q
    ||| |||||||||||||| ||||||||    
T  30409754 ctatcactattttctcaaaagacaatc 30409780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 19 - 241
Target Start/End: Original strand, 29394156 - 29394378
Alignment:
Q  19 aaaggctaggcataaaacaaaag---tgcagcacccaaaagcacaaacaacactacggttcctaatgacattaaccataaacctgatacctaaaa-acca 114  Q
    |||||||||||| ||||||||||   |||||| || |||| ||| |||| ||| |||||||||| |||||  ||||| ||||||| || |||||| | ||    
T  29394156 aaaggctaggcacaaaacaaaagaggtgcagcccctaaaa-caccaacatcacaacggttcctagtgacag-aaccaaaaacctgttatctaaaatagca 29394253  T
Q  115 gcagcctcacgcagccaaccttgaggcaccaaaacaaacctgctgcccctcgagggcacaccgcaaaatacagaaaccacttcgacaaagtccaccaaaa 214  Q
    ||||||||||||||| |||   || |||| | |   |  |||||||||||| ||  |||||| | ||| ||||||||||| ||||||||||  |||||||    
T  29394254 gcagcctcacgcagctaacaaagatgcactacac--agtctgctgcccctcaagaacacaccacgaaaaacagaaaccacctcgacaaagtataccaaaa 29394351  T
Q  215 ctaccactattttctcaacagacaatc 241  Q
    ||| |||||||||||||| ||||||||    
T  29394352 ctatcactattttctcaaaagacaatc 29394378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 153 - 241
Target Start/End: Original strand, 29393929 - 29394017
Alignment:
Q  153 cctgctgcccctcgagggcacaccgcaaaatacagaaaccacttcgacaaagtccaccaaaactaccactattttctcaacagacaatc 241  Q
    |||||||  ||||||| ||||| | ||||| ||| ||||||| |||||||||||||||||||||| ||||||||||||||  |||||||    
T  29393929 cctgctgttcctcgagagcacatcacaaaaaacataaaccacctcgacaaagtccaccaaaactatcactattttctcaaaggacaatc 29394017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 113 - 232
Target Start/End: Original strand, 30409293 - 30409410
Alignment:
Q  113 cagcagcctcacgcagccaaccttgaggcaccaaaacaaacctgctgcccctcgagggcacaccgcaaaatacagaaaccacttcgacaaagtccaccaa 212  Q
    ||||| ||||||||||| |||  |||||||||| |   | ||||||| || ||||| ||||||| ||||| ||| ||||||| |||||| ||||||||||    
T  30409293 cagcaccctcacgcagcaaacactgaggcaccacac--agcctgctgtccttcgagagcacaccacaaaaaacataaaccacctcgacagagtccaccaa 30409390  T
Q  213 aactaccactattttctcaa 232  Q
    ||||| ||||||||||||||    
T  30409391 aactatcactattttctcaa 30409410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 153 - 232
Target Start/End: Original strand, 30402774 - 30402853
Alignment:
Q  153 cctgctgcccctcgagggcacaccgcaaaatacagaaaccacttcgacaaagtccaccaaaactaccactattttctcaa 232  Q
    ||||||| || ||||| ||||||| ||||| ||| ||||||| |||||| ||||||||||||||| ||||||||||||||    
T  30402774 cctgctgtccttcgagagcacaccacaaaaaacataaaccacctcgacagagtccaccaaaactatcactattttctcaa 30402853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 71; Significance: 6e-32; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 61 - 241
Target Start/End: Original strand, 9260773 - 9260951
Alignment:
Q  61 aacaacactacggttcctaatgacattaaccataaacctgatacctaaaa-accagcagcctcacgcagccaaccttgaggcaccaaaacaaacctgctg 159  Q
    |||| ||| |||||||||| |||||  ||||| ||||||| || |||||| | |||||||||||||||||||||   ||||||| | |   | |||||||    
T  9260773 aacatcacaacggttcctagtgacag-aaccaaaaacctgctatctaaaatagcagcagcctcacgcagccaacacagaggcactacac--agcctgctg 9260869  T
Q  160 cccctcgagggcacaccgcaaaatacagaaaccacttcgacaaagtccaccaaaactaccactattttctcaacagacaatc 241  Q
    ||||||||| ||||||| ||||| ||||||||||| |||||||| ||||||||||||| |||||||||||||||||||||||    
T  9260870 cccctcgagagcacaccacaaaaaacagaaaccacctcgacaaaatccaccaaaactatcactattttctcaacagacaatc 9260951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 153 - 241
Target Start/End: Original strand, 9260500 - 9260588
Alignment:
Q  153 cctgctgcccctcgagggcacaccgcaaaatacagaaaccacttcgacaaagtccaccaaaactaccactattttctcaacagacaatc 241  Q
    ||||||| |||||||| ||||||  ||||| ||| ||||||| |||||||||||||||||||||| | |||||||||||| ||||||||    
T  9260500 cctgctgtccctcgagagcacactacaaaaaacaaaaaccacctcgacaaagtccaccaaaactatcgctattttctcaaaagacaatc 9260588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 69; Significance: 1e-30; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 19 - 241
Target Start/End: Original strand, 1603964 - 1604185
Alignment:
Q  19 aaaggctaggcataaaacaaaag---tgcagcacccaaaagcacaaacaacactacggttcctaatgacattaaccataaacctgatacctaaaaaccag 115  Q
    |||||||||||| ||||||||||   |||||| || |||| ||| |||| ||  ||| |||||| |||||  ||||| ||||||| || ||||| | |||    
T  1603964 aaaggctaggcacaaaacaaaagaggtgcagcccctaaaa-caccaacatcataacgattcctagtgacag-aaccaaaaacctgctatctaaatagcag 1604061  T
Q  116 cagcctcacgcagccaaccttgaggcaccaaaacaaacctgctgcccctcgagggcacaccgcaaaatacagaaaccacttcgacaaagtccaccaaaac 215  Q
    ||||||||||||||||||   ||||||| | |   | ||||||||||||||||  |||||| ||||| ||||||||||| ||||||||||||||||||||    
T  1604062 cagcctcacgcagccaacaaagaggcactacac--atcctgctgcccctcgagaacacaccacaaaaaacagaaaccacatcgacaaagtccaccaaaac 1604159  T
Q  216 taccactattttctcaacagacaatc 241  Q
    || |||||||||||||| ||||||||    
T  1604160 tatcactattttctcaaaagacaatc 1604185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 19 - 241
Target Start/End: Complemental strand, 11144053 - 11143831
Alignment:
Q  19 aaaggctaggcataaaacaaaag---tgcagcacccaaaagcacaaacaacactacggttcctaatgacattaaccataaacctgatacctaaaa-acca 114  Q
    |||||||||||| ||||||||||   |||||| || |||| ||| |||| ||| |||||||||| |||||  ||||| ||||||| || |||||| | ||    
T  11144053 aaaggctaggcacaaaacaaaagaggtgcagcccctaaaa-caccaacatcacaacggttcctagtgacag-aaccaaaaacctgctatctaaaatagca 11143956  T
Q  115 gcagcctcacgcagccaaccttgaggcaccaaaacaaacctgctgcccctcgagggcacaccgcaaaatacagaaaccacttcgacaaagtccaccaaaa 214  Q
    |||||||||||||||||||   || |||| | |   | ||||||||||||| ||  |||||| ||||| ||||||||||| ||||||||||  |||||||    
T  11143955 gcagcctcacgcagccaacaaagatgcactacac--agcctgctgcccctcaagaacacaccacaaaaaacagaaaccacctcgacaaagtataccaaaa 11143858  T
Q  215 ctaccactattttctcaacagacaatc 241  Q
    ||| |||||||||||||| ||||||||    
T  11143857 ctatcactattttctcaaaagacaatc 11143831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 19 - 227
Target Start/End: Complemental strand, 44552080 - 44551873
Alignment:
Q  19 aaaggctaggcataaaacaaaag---tgcagcacccaaaagcacaaacaacactacggttcctaatgacattaaccataaacctgatacctaaaa-acca 114  Q
    |||||||||||| ||||||||||   |||||| || |||| ||| |||| ||| |||||||| | |||||  ||||| ||||||| ||||||||| | ||    
T  44552080 aaaggctaggcacaaaacaaaagagatgcagcccctaaaa-caccaacatcacaacggttccgagtgacaa-aaccaaaaacctgctacctaaaatagca 44551983  T
Q  115 gcagcctcacgcagccaaccttgaggcaccaaaacaaacctgctgcccctcgagggcacaccgcaaaatacagaaaccacttcgacaaagtccaccaaaa 214  Q
    |||||||||||||||||||   ||||||| | |   | |||||||||||||||| | ||||| ||||| |||||||| || |||||||||||||||||||    
T  44551982 gcagcctcacgcagccaacacagaggcactacac--agcctgctgcccctcgagagaacaccacaaaaaacagaaac-acctcgacaaagtccaccaaaa 44551886  T
Q  215 ctaccactatttt 227  Q
    ||| |||||||||    
T  44551885 ctatcactatttt 44551873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 153 - 232
Target Start/End: Complemental strand, 11144280 - 11144201
Alignment:
Q  153 cctgctgcccctcgagggcacaccgcaaaatacagaaaccacttcgacaaagtccaccaaaactaccactattttctcaa 232  Q
    ||||||| || ||||| ||||||| ||||| ||| ||||||| |||||||||||||||||||||| ||||||||||||||    
T  11144280 cctgctgtccttcgagagcacaccacaaaaaacataaaccacctcgacaaagtccaccaaaactatcactattttctcaa 11144201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 113 - 241
Target Start/End: Original strand, 1661447 - 1661573
Alignment:
Q  113 cagcagcctcacgcagccaaccttgaggcaccaaaacaaacctgctgcccctcgagggcacaccgcaaaatacagaaaccacttcgacaaagtccaccaa 212  Q
    ||||| |||||||||||||||   ||||||||| |   | ||||||| |||||||| |||||||  |||| ||| ||||||| ||||| |||||||||||    
T  1661447 cagcaccctcacgcagccaacacagaggcaccacac--agcctgctgtccctcgagagcacaccataaaaaacataaaccacctcgacgaagtccaccaa 1661544  T
Q  213 aactaccactattttctcaacagacaatc 241  Q
    ||||| ||||||||||||||  |||||||    
T  1661545 aactatcactattttctcaaaggacaatc 1661573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 8e-19; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 153 - 217
Target Start/End: Complemental strand, 32445923 - 32445859
Alignment:
Q  153 cctgctgcccctcgagggcacaccgcaaaatacagaaaccacttcgacaaagtccaccaaaacta 217  Q
    |||||||||||||||| ||||||| ||||| ||||||||||| ||||||||||||||||||||||    
T  32445923 cctgctgcccctcgagagcacaccacaaaaaacagaaaccacctcgacaaagtccaccaaaacta 32445859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 178 - 227
Target Start/End: Original strand, 14986954 - 14987002
Alignment:
Q  178 caaaatacagaaaccacttcgacaaagtccaccaaaactaccactatttt 227  Q
    ||||| |||||||| || |||||||||||||||||||||| |||||||||    
T  14986954 caaaaaacagaaac-acctcgacaaagtccaccaaaactatcactatttt 14987002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1243 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold1243
Description:

Target: scaffold1243; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 357 - 471
Target Start/End: Original strand, 1 - 116
Alignment:
Q  357 gaaaggcgtagaaatagtcatgaaattttttgtcgatgcactttgaatcagccatcacatatcagagcacacaacatgaccaaatcaaagcacttaatta 456  Q
    |||||| ||||||| ||||||||||  ||||||| ||||| | |||||||  | ||| | |||| ||||||||||||||| |||||||||| ||||||||    
T  1 gaaaggtgtagaaacagtcatgaaaaattttgtcaatgcaatgtgaatcaatcttcagaaatcaaagcacacaacatgactaaatcaaagcgcttaatta 100  T
Q  457 -caaaacaaatctttc 471  Q
     |||||||||||||||    
T  101 gcaaaacaaatctttc 116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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