View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5001_low_2 (Length: 407)
Name: NF5001_low_2
Description: NF5001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5001_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 172; Significance: 3e-92; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 18 - 198
Target Start/End: Original strand, 46169651 - 46169833
Alignment:
| Q |
18 |
aatgacatgttgatatgtttcttaaagaccattttaacagaaaaaacaacaccccttcatgatctttcaaaatctaaattt--atgttggccttgattgt |
115 |
Q |
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| T |
46169651 |
aatgacatgttgatatgtttcttaaagaccattttaacagaaaaaacaacaccccttcatgatctttcaaaatctaaattttaatgttggccttgattgt |
46169750 |
T |
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| Q |
116 |
gagttgtggctatgatctatttgagctgatgttgattgctaataacagaacattgagtgtttattatttaaatcactacaata |
198 |
Q |
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| T |
46169751 |
gagttgtggctatgatctatttgagctgatgttgattgctaataacagaacattgagtgtttattatttaaatcactacaata |
46169833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 284 - 399
Target Start/End: Original strand, 46169923 - 46170038
Alignment:
| Q |
284 |
catcatctctcttattttaaccaaactctgtctaaagtcactctataattcatacctaaaaggtagatgatcaaattttgaacatggacaaggatactgt |
383 |
Q |
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| T |
46169923 |
catcatctctcttattttaaccaaattttgtctaaagtcactctataattcatacctaaaaggtagatgatcaaattttgaacatggacaaggatactgt |
46170022 |
T |
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| Q |
384 |
aactataattcatctc |
399 |
Q |
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| T |
46170023 |
aactataattcatctc |
46170038 |
T |
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