View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5001_low_7 (Length: 267)
Name: NF5001_low_7
Description: NF5001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5001_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 20 - 257
Target Start/End: Complemental strand, 40311739 - 40311502
Alignment:
| Q |
20 |
tctcaaacaaacaaaccatctctttctctttccaaattcccaacaaaaacaaatttcagcccccatttttctcttttgggttcttccaaccctaccggcc |
119 |
Q |
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| T |
40311739 |
tctcaaacaaacaaaccatctctttctctttccaaattcccaacaaaaacaaatttcagcccccatttttctcttttgggttcttccaaccctaccggcc |
40311640 |
T |
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| Q |
120 |
ccaaaaccttgcatccccaacacaacaatctctcagcctcaatttcacgttcaccttcactttatggacacacagacaggtaatttaatttttctaatta |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40311639 |
ccaaaaccttgcatccccaacacaacaatctctcagcctcaatttcacgttcaccttcactttatggacacacagacaggtaatttaatttttctaatta |
40311540 |
T |
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| Q |
220 |
ctcccttttattttaggtttcacaccattcctcctttg |
257 |
Q |
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|||||||||||||||||||||||| ||||||||||||| |
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| T |
40311539 |
ctcccttttattttaggtttcacatcattcctcctttg |
40311502 |
T |
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