View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5002-Insertion-1 (Length: 432)

Name: NF5002-Insertion-1
Description: NF5002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5002-Insertion-1
NF5002-Insertion-1
[»] chr2 (2 HSPs)
chr2 (8-432)||(38486380-38486804)
chr2 (8-220)||(3685823-3686035)
[»] chr4 (1 HSPs)
chr4 (16-422)||(30120789-30121195)
[»] chr3 (1 HSPs)
chr3 (8-65)||(43955843-43955900)


Alignment Details
Target: chr2 (Bit Score: 409; Significance: 0; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 8 - 432
Target Start/End: Complemental strand, 38486804 - 38486380
Alignment:
Q  8 gattcaacccaacatcccttccttttccaacttgaatgtattcatgatgtgtgatattacctccacgaatagtacagttaaaaccggcaaaaatgtcctc 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38486804 gattcaacccaacatcccttccttttccaacttgaatgtattcatgatgtgtgatattacctccacgaatagtacagttaaaaccggcaaaaatgtcctc 38486705  T
Q  108 gcttatgttgatcactctagaagctttactgataccacctctagttataaaccaaaacctgtcaaacacatcaggatggccataatgcattcgaattttc 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38486704 gcttatgttgatcactctagaagctttactgataccacctctagttataaaccaaaacctgtcaaacacatcaggatggccataatgcattcgaattttc 38486605  T
Q  208 aaagggtttgccaaaaccctctgccctaaggtgacaaaacttgattcctgagctgacatgaaccaagcatgagaggaaacgaaacctgtaaatatatgtt 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |||||||||||||||||||||||||    
T  38486604 aaagggtttgccaaaaccctctgccctaaggtgacaaaacttgattcctgagctgacataaaccaagcaagagaagaaacgaaacctgtaaatatatgtt 38486505  T
Q  308 ccctcactcccaaaatagttggttttcgaataccgtagtaatgcttgaattcttccaagagatttcgtactttaagtgcctcctcaaagtagttgtcctg 407  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38486504 ccctcactcccaaaatagttggttttcgaataccatagtaatgcttgaattcttccaagagatttcgtactttaagtgcctcctcaaagtagttgtcctg 38486405  T
Q  408 gttcatatcaatagtttgaattgca 432  Q
    |||||||||||||||||||||||||    
T  38486404 gttcatatcaatagtttgaattgca 38486380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 8 - 220
Target Start/End: Complemental strand, 3686035 - 3685823
Alignment:
Q  8 gattcaacccaacatcccttccttttccaacttgaatgtattcatgatgtgtgatattacctccacgaatagtacagttaaaaccggcaaaaatgtcctc 107  Q
    ||||||| |||||||| |||||||| || || || || |||||||||||||| | ||| || || || |  ||||| || ||||| |||||||| || ||    
T  3686035 gattcaagccaacatctcttcctttacctacctgtatatattcatgatgtgtcacattgccacctcgcaatgtacaattgaaaccagcaaaaatatcttc 3685936  T
Q  108 gcttatgttgatcactctagaagctttactgataccacctctagttataaaccaaaacctgtcaaacacatcaggatggccataatgcattcgaattttc 207  Q
     || || |||||||||||||| || || ||||  ||||| |||   |  |||||||| |||||||||||||| ||||| || || ||||| || | ||||    
T  3685935 actaatattgatcactctagatgccttgctgactccacccctacacaagaaccaaaatctgtcaaacacatccggatgaccgtagtgcatccgtactttc 3685836  T
Q  208 aaagggtttgcca 220  Q
    |||||||||||||    
T  3685835 aaagggtttgcca 3685823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 167; Significance: 3e-89; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 16 - 422
Target Start/End: Complemental strand, 30121195 - 30120789
Alignment:
Q  16 ccaacatcccttccttttccaacttgaatgtattcatgatgtgtgatattacctccacgaatagtacagttaaaaccggcaaaaatgtcctcgcttatgt 115  Q
    |||||||||||||| |||||||| |||||||||||||| || |||| |||||||||||||| |||||| || || || ||||| ||||||||||||||||    
T  30121195 ccaacatcccttccctttccaacctgaatgtattcatggtgagtgacattacctccacgaagagtacaattgaacccagcaaatatgtcctcgcttatgt 30121096  T
Q  116 tgatcactctagaagctttactgataccacctctagttataaaccaaaacctgtcaaacacatcaggatggccataatgcattcgaattttcaaagggtt 215  Q
    |||||||||| |||||||| ||||||||||||| |||||  ||||||||||||||||||||||| ||||| |||||||||||||||| ||||||||| ||    
T  30121095 tgatcactctggaagctttgctgataccacctcgagttaagaaccaaaacctgtcaaacacatctggatgaccataatgcattcgaactttcaaaggatt 30120996  T
Q  216 tgccaaaaccctctgccctaaggtgacaaaacttgattcctgagctgacatgaaccaagcatgagaggaaacgaaacctgtaaatatatgttccctcact 315  Q
    ||||||||||||||| |||| |||||| |||||||  ||||| |||||||||||||| ||| ||||||| ||| | || || || || |||||||| ||     
T  30120995 tgccaaaaccctctgtcctagggtgacgaaacttgtctcctgggctgacatgaaccaggcaagagaggacacggagccagtgaaaatgtgttccctgaca 30120896  T
Q  316 cccaaaatagttggttttcgaataccgtagtaatgcttgaattcttccaagagatttcgtactttaagtgcctcctcaaagtagttgtcctggttcatat 415  Q
    || ||||| |||||||| || | |||||||||| |  |  | ||||| | ||||||||  |  || ||||| |||||||||||||| ||||| ||||| |    
T  30120895 cctaaaattgttggtttccggacaccgtagtaacgtctatactcttcaaggagatttctcatcttgagtgcttcctcaaagtagttatcctgattcatgt 30120796  T
Q  416 caatagt 422  Q
    | |||||    
T  30120795 ctatagt 30120789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 65
Target Start/End: Original strand, 43955843 - 43955900
Alignment:
Q  8 gattcaacccaacatcccttccttttccaacttgaatgtattcatgatgtgtgatatt 65  Q
    |||||| ||||||||| || || ||||||||||| |||||||||||||| || |||||    
T  43955843 gattcatcccaacatctctaccctttccaacttggatgtattcatgatgagtaatatt 43955900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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