View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5002-Insertion-2 (Length: 408)

Name: NF5002-Insertion-2
Description: NF5002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5002-Insertion-2
NF5002-Insertion-2
[»] chr4 (9 HSPs)
chr4 (261-408)||(53699282-53699429)
chr4 (8-175)||(53699051-53699232)
chr4 (8-63)||(11036751-11036806)
chr4 (8-67)||(53828290-53828349)
chr4 (8-67)||(53828524-53828583)
chr4 (9-67)||(21685023-21685081)
chr4 (8-69)||(9685656-9685717)
chr4 (8-69)||(21498819-21498880)
chr4 (7-47)||(2261774-2261814)
[»] chr7 (6 HSPs)
chr7 (7-67)||(40746034-40746094)
chr7 (8-69)||(40746289-40746350)
chr7 (8-69)||(20305662-20305723)
chr7 (8-69)||(26028960-26029021)
chr7 (8-69)||(31257030-31257091)
chr7 (8-69)||(34027417-34027478)
[»] chr5 (11 HSPs)
chr5 (14-70)||(19522350-19522406)
chr5 (8-71)||(8287825-8287888)
chr5 (8-67)||(15480583-15480642)
chr5 (8-50)||(15438901-15438943)
chr5 (9-67)||(24269872-24269930)
chr5 (9-67)||(24346502-24346560)
chr5 (8-69)||(27132992-27133053)
chr5 (8-48)||(15590198-15590238)
chr5 (7-67)||(38731839-38731899)
chr5 (7-67)||(38976956-38977016)
chr5 (8-72)||(41666753-41666817)
[»] chr2 (6 HSPs)
chr2 (8-68)||(13486358-13486418)
chr2 (8-67)||(24395887-24395946)
chr2 (8-67)||(29718352-29718411)
chr2 (7-69)||(19191609-19191671)
chr2 (8-69)||(17854928-17854989)
chr2 (7-48)||(40149023-40149064)
[»] chr6 (8 HSPs)
chr6 (8-67)||(6054427-6054486)
chr6 (8-69)||(21690746-21690807)
chr6 (7-67)||(8566960-8567020)
chr6 (9-69)||(27656483-27656543)
chr6 (8-67)||(9705278-9705337)
chr6 (8-69)||(8026413-8026474)
chr6 (8-69)||(8026628-8026689)
chr6 (8-69)||(30256836-30256897)
[»] scaffold0400 (1 HSPs)
scaffold0400 (8-69)||(3869-3930)
[»] scaffold0365 (1 HSPs)
scaffold0365 (8-69)||(4513-4574)
[»] chr1 (6 HSPs)
chr1 (8-69)||(51589250-51589311)
chr1 (8-69)||(51589830-51589891)
chr1 (7-63)||(16162956-16163012)
chr1 (8-69)||(25137302-25137363)
chr1 (8-69)||(51589016-51589077)
chr1 (8-48)||(39348372-39348412)
[»] chr3 (8 HSPs)
chr3 (7-67)||(26272325-26272385)
chr3 (8-72)||(34610585-34610649)
chr3 (8-67)||(8018992-8019051)
chr3 (8-67)||(54368540-54368599)
chr3 (9-63)||(13741106-13741160)
chr3 (8-69)||(11589809-11589870)
chr3 (7-48)||(38791470-38791511)
chr3 (9-69)||(13574920-13574980)
[»] chr8 (10 HSPs)
chr8 (8-67)||(39743553-39743612)
chr8 (8-66)||(4828317-4828375)
chr8 (9-67)||(38476302-38476360)
chr8 (8-69)||(8716138-8716199)
chr8 (8-69)||(17469842-17469903)
chr8 (8-69)||(17477089-17477150)
chr8 (8-69)||(19256585-19256646)
chr8 (8-69)||(24075305-24075366)
chr8 (14-70)||(4963384-4963440)
chr8 (8-72)||(39960216-39960280)
[»] scaffold0766 (1 HSPs)
scaffold0766 (8-65)||(6298-6355)


Alignment Details
Target: chr4 (Bit Score: 140; Significance: 3e-73; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 261 - 408
Target Start/End: Original strand, 53699282 - 53699429
Alignment:
Q  261 tatcaaaaaatcactaccaatatcacctggttatattgaattatttttgtcagcaagaacactgaaatattaaaagaaaaggtacaaagggtatttcaat 360  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  53699282 tatcaaaaaatcactaccaatatcacctggttatattgaattatttttgtcagcaagaacactgaaatattaaaataaaaggtacaaagggtatttcaat 53699381  T
Q  361 ctaccaatatcaaagtcgtttaattagaaggttacttcctaagctggc 408  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||    
T  53699382 ctaccaatatcaaagtcgtttaattagaaggtaacttcctaagctggc 53699429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 8 - 175
Target Start/End: Original strand, 53699051 - 53699232
Alignment:
Q  8 caatcctcacctcacagaccgattttctggggttgtgttagacataaccacaatttctaatagtataaaaattcctttatattttccttttgctt----- 102  Q
    |||||||||||||||| ||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||         
T  53699051 caatcctcacctcacaaaccgactttatggggttgtgttagacatagccacaatttctaatagtataaaaattcctttatattttccttttgctttaggt 53699150  T
Q  103 -------tacaa--cttgttgtnnnnnnngattaaattgatctaaaccattatttgtgtgaagtacttttcgtattcttgta 175  Q
           |||||  ||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53699151 cgaaaactacaagccttgttgtaaaaaaggattaaattgatctaaaccattatttgtgtgaagtacttttcgtattcttgta 53699232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 8 - 63
Target Start/End: Complemental strand, 11036806 - 11036751
Alignment:
Q  8 caatcctcacctcacagaccgattttctggggttgtgttagacataaccacaattt 63  Q
    ||||||||||||||||  |||||| | |||||||||||||| | ||||||||||||    
T  11036806 caatcctcacctcacaagccgattgtgtggggttgtgttaggcctaaccacaattt 11036751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 8 - 67
Target Start/End: Complemental strand, 53828349 - 53828290
Alignment:
Q  8 caatcctcacctcacagaccgattttctggggttgtgttagacataaccacaatttctaa 67  Q
    |||||||||||||| | ||||||||| |||||||||||||| |  || ||||||||||||    
T  53828349 caatcctcacctcataaaccgattttgtggggttgtgttaggcccaatcacaatttctaa 53828290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 8 - 67
Target Start/End: Complemental strand, 53828583 - 53828524
Alignment:
Q  8 caatcctcacctcacagaccgattttctggggttgtgttagacataaccacaatttctaa 67  Q
    |||||||||||||| |  |||||||| |||||||||||||| |  |||||||||||||||    
T  53828583 caatcctcacctcataagccgattttgtggggttgtgttaggcccaaccacaatttctaa 53828524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 9 - 67
Target Start/End: Original strand, 21685023 - 21685081
Alignment:
Q  9 aatcctcacctcacagaccgattttctggggttgtgttagacataaccacaatttctaa 67  Q
    |||||||||||||||  |||||||| |||||||||||||  |  |||||||||||||||    
T  21685023 aatcctcacctcacaagccgattttgtggggttgtgttaagcccaaccacaatttctaa 21685081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 69
Target Start/End: Original strand, 9685656 - 9685717
Alignment:
Q  8 caatcctcacctcacagaccgattttctggggttgtgttagacataaccacaatttctaata 69  Q
    ||||||||||||||||  ||| |||| |||||||||||||| |  |||||| ||||||||||    
T  9685656 caatcctcacctcacaagccggttttatggggttgtgttaggcccaaccacgatttctaata 9685717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 69
Target Start/End: Original strand, 21498819 - 21498880
Alignment:
Q  8 caatcctcacctcacagaccgattttctggggttgtgttagacataaccacaatttctaata 69  Q
    ||||||||||||||||  ||| |||| |||||||||||||| |  |||||| ||||||||||    
T  21498819 caatcctcacctcacaagccggttttgtggggttgtgttaggcccaaccacgatttctaata 21498880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 7 - 47
Target Start/End: Complemental strand, 2261814 - 2261774
Alignment:
Q  7 acaatcctcacctcacagaccgattttctggggttgtgtta 47  Q
    |||||||||||||||||||||  |||| |||||||||||||    
T  2261814 acaatcctcacctcacagaccagttttgtggggttgtgtta 2261774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000009; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 7 - 67
Target Start/End: Complemental strand, 40746094 - 40746034
Alignment:
Q  7 acaatcctcacctcacagaccgattttctggggttgtgttagacataaccacaatttctaa 67  Q
    |||||| |||||||||| ||||||||| |||| |||||||||||  |||||||||||||||    
T  40746094 acaatcttcacctcacaaaccgattttgtgggattgtgttagacccaaccacaatttctaa 40746034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 8 - 69
Target Start/End: Original strand, 40746289 - 40746350
Alignment:
Q  8 caatcctcacctcacagaccgattttctggggttgtgttagacataaccacaatttctaata 69  Q
    |||||||||||||| |  |||||||| |||||||||||||| |  |||||||||||||||||    
T  40746289 caatcctcacctcataagccgattttgtggggttgtgttaggcccaaccacaatttctaata 40746350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 69
Target Start/End: Complemental strand, 20305723 - 20305662
Alignment:
Q  8 caatcctcacctcacagaccgattttctggggttgtgttagacataaccacaatttctaata 69  Q
    |||||||||||||||| ||  ||||| |||||||||||||| | ||||||  ||||||||||    
T  20305723 caatcctcacctcacaaacttattttgtggggttgtgttaggcctaaccatgatttctaata 20305662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 69
Target Start/End: Complemental strand, 26029021 - 26028960
Alignment:
Q  8 caatcctcacctcacagaccgattttctggggttgtgttagacataaccacaatttctaata 69  Q
    ||||||||||||||||  |||||||| || |||||||||||||  ||||| ||| |||||||    
T  26029021 caatcctcacctcacaagccgattttgtgaggttgtgttagacccaaccataatctctaata 26028960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 69
Target Start/End: Complemental strand, 31257091 - 31257030
Alignment:
Q  8 caatcctcacctcacagaccgattttctggggttgtgttagacataaccacaatttctaata 69  Q
    ||||| |||||||||| |||  |||| ||||||||||||||||  |||||| ||||||||||    
T  31257091 caatcttcacctcacaaaccagttttgtggggttgtgttagactcaaccacgatttctaata 31257030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 69
Target Start/End: Original strand, 34027417 - 34027478
Alignment:
Q  8 caatcctcacctcacagaccgattttctggggttgtgttagacataaccacaatttctaata 69  Q
    ||||||||||||||||  ||| |||| |||||||||||||| |  |||||| ||||||||||    
T  34027417 caatcctcacctcacaagccggttttgtggggttgtgttaggcccaaccacgatttctaata 34027478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000009; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 14 - 70
Target Start/End: Original strand, 19522350 - 19522406
Alignment:
Q  14 tcacctcacagaccgattttctggggttgtgttagacataaccacaatttctaatag 70  Q
    ||||||||||  |||||||| ||||||||||||||||| |||||| |||||||||||    
T  19522350 tcacctcacaagccgattttgtggggttgtgttagacacaaccacgatttctaatag 19522406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 8 - 71
Target Start/End: Original strand, 8287825 - 8287888
Alignment:
Q  8 caatcctcacctcacagaccgattttctggggttgtgttagacataaccacaatttctaatagt 71  Q
    |||||| |||||||||  ||| |||| |||||||||||||| |  |||||||||||||||||||    
T  8287825 caatccccacctcacaagccggttttgtggggttgtgttaggcccaaccacaatttctaatagt 8287888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 8 - 67
Target Start/End: Original strand, 15480583 - 15480642
Alignment:
Q  8 caatcctcacctcacagaccgattttctggggttgtgttagacataaccacaatttctaa 67  Q
    ||||||||||||||||  ||| |||| |||||||||||||| |  |||||||||||||||    
T  15480583 caatcctcacctcacaagccggttttgtggggttgtgttaggcccaaccacaatttctaa 15480642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 8 - 50
Target Start/End: Original strand, 15438901 - 15438943
Alignment:
Q  8 caatcctcacctcacagaccgattttctggggttgtgttagac 50  Q
    ||||||||||||||||  |||||||||| ||||||||||||||    
T  15438901 caatcctcacctcacaagccgattttctagggttgtgttagac 15438943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 9 - 67
Target Start/End: Complemental strand, 24269930 - 24269872
Alignment:
Q  9 aatcctcacctcacagaccgattttctggggttgtgttagacataaccacaatttctaa 67  Q
    |||||||||||||||  ||| |||| |||||||||||||| |  |||||||||||||||    
T  24269930 aatcctcacctcacaagccggttttatggggttgtgttaggctcaaccacaatttctaa 24269872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 9 - 67
Target Start/End: Complemental strand, 24346560 - 24346502
Alignment:
Q  9 aatcctcacctcacagaccgattttctggggttgtgttagacataaccacaatttctaa 67  Q
    |||||||||||||||  ||| |||| |||||||||||||| |  |||||||||||||||    
T  24346560 aatcctcacctcacaagccggttttatggggttgtgttaggctcaaccacaatttctaa 24346502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 69
Target Start/End: Complemental strand, 27133053 - 27132992
Alignment:
Q  8 caatcctcacctcacagaccgattttctggggttgtgttagacataaccacaatttctaata 69  Q
    ||||||||||||||||  ||| |||| |||||||||||||| |  |||||| ||||||||||    
T  27133053 caatcctcacctcacaagccggttttgtggggttgtgttaggcccaaccacgatttctaata 27132992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 8 - 48
Target Start/End: Original strand, 15590198 - 15590238
Alignment:
Q  8 caatcctcacctcacagaccgattttctggggttgtgttag 48  Q
    ||||||||||||||||| | |||||| ||||||||||||||    
T  15590198 caatcctcacctcacaggctgattttgtggggttgtgttag 15590238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 7 - 67
Target Start/End: Complemental strand, 38731899 - 38731839
Alignment:
Q  7 acaatcctcacctcacagaccgattttctggggttgtgttagacataaccacaatttctaa 67  Q
    |||||||||||||||||   ||||||| || ||||||||||| || |||||| ||||||||    
T  38731899 acaatcctcacctcacaagtcgattttgtgaggttgtgttaggcacaaccaccatttctaa 38731839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 7 - 67
Target Start/End: Original strand, 38976956 - 38977016
Alignment:
Q  7 acaatcctcacctcacagaccgattttctggggttgtgttagacataaccacaatttctaa 67  Q
    ||||||||||||||||| |||| |||| ||| | |||||||| || |||||| ||||||||    
T  38976956 acaatcctcacctcacaaaccggttttgtggaggtgtgttaggcacaaccacgatttctaa 38977016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 8 - 72
Target Start/End: Complemental strand, 41666817 - 41666753
Alignment:
Q  8 caatcctcacctcacagaccgattttctggggttgtgttagacataaccacaatttctaatagta 72  Q
    ||||||||||||||||  ||| |||| |||||||||||||| |  |||||| |||||||| ||||    
T  41666817 caatcctcacctcacaagccggttttgtggggttgtgttaggcccaaccacgatttctaagagta 41666753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000009; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 8 - 68
Target Start/End: Original strand, 13486358 - 13486418
Alignment:
Q  8 caatcctcacctcacagaccgattttctggggttgtgttagacataaccacaatttctaat 68  Q
    |||||||||||||||| || |||||| |||||||||||||| | ||||||| |||||||||    
T  13486358 caatcctcacctcacaaactgattttgtggggttgtgttaggcctaaccacgatttctaat 13486418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 8 - 67
Target Start/End: Original strand, 24395887 - 24395946
Alignment:
Q  8 caatcctcacctcacagaccgattttctggggttgtgttagacataaccacaatttctaa 67  Q
    |||||||||||||||| | ||||||| |||||||||||||| |  |||||| ||||||||    
T  24395887 caatcctcacctcacaaatcgattttgtggggttgtgttaggccaaaccacgatttctaa 24395946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 8 - 67
Target Start/End: Original strand, 29718352 - 29718411
Alignment:
Q  8 caatcctcacctcacagaccgattttctggggttgtgttagacataaccacaatttctaa 67  Q
    ||||||||||||||||  ||| |||| |||||||||||||| | ||||||| ||||||||    
T  29718352 caatcctcacctcacaagccggttttgtggggttgtgttaggcctaaccacgatttctaa 29718411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 7 - 69
Target Start/End: Complemental strand, 19191671 - 19191609
Alignment:
Q  7 acaatcctcacctcacagaccgattttctggggttgtgttagacataaccacaatttctaata 69  Q
    |||||||||||||||||  ||| |||| |||||||||||||| |  |||||| ||||||||||    
T  19191671 acaatcctcacctcacaagccggttttgtggggttgtgttaggcccaaccacgatttctaata 19191609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 69
Target Start/End: Complemental strand, 17854989 - 17854928
Alignment:
Q  8 caatcctcacctcacagaccgattttctggggttgtgttagacataaccacaatttctaata 69  Q
    ||||||||||||||||  ||| |||| |||||||||| |||||  |||||| ||||||||||    
T  17854989 caatcctcacctcacaagccggttttgtggggttgtgctagacccaaccacgatttctaata 17854928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 48
Target Start/End: Complemental strand, 40149064 - 40149023
Alignment:
Q  7 acaatcctcacctcacagaccgattttctggggttgtgttag 48  Q
    |||||||||||||||||  |||||||| ||||||||||||||    
T  40149064 acaatcctcacctcacaagccgattttgtggggttgtgttag 40149023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 8 - 67
Target Start/End: Original strand, 6054427 - 6054486
Alignment:
Q  8 caatcctcacctcacagaccgattttctggggttgtgttagacataaccacaatttctaa 67  Q
    |||||||||||||||| ||||||||| | ||||||||||||||  |||||| ||||||||    
T  6054427 caatcctcacctcacaaaccgattttgtagggttgtgttagacccaaccacgatttctaa 6054486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 8 - 69
Target Start/End: Original strand, 21690746 - 21690807
Alignment:
Q  8 caatcctcacctcacagaccgattttctggggttgtgttagacataaccacaatttctaata 69  Q
    ||||||||||||||||  |||||||| |||||||||||||| |  |||||| ||||||||||    
T  21690746 caatcctcacctcacaagccgattttgtggggttgtgttaggctcaaccacgatttctaata 21690807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 67
Target Start/End: Complemental strand, 8567020 - 8566960
Alignment:
Q  7 acaatcctcacctcacagaccgattttctggggttgtgttagacataaccacaatttctaa 67  Q
    ||||||||||||||||| |||| |||| |||||||||||||| |  |||||| ||||||||    
T  8567020 acaatcctcacctcacaaaccggttttgtggggttgtgttaggcccaaccacgatttctaa 8566960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 69
Target Start/End: Original strand, 27656483 - 27656543
Alignment:
Q  9 aatcctcacctcacagaccgattttctggggttgtgttagacataaccacaatttctaata 69  Q
    |||||||||||||||  ||| |||| |||||||||||||| |  |||||||||||||||||    
T  27656483 aatcctcacctcacaagccggttttgtggggttgtgttaggcccaaccacaatttctaata 27656543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 8 - 67
Target Start/End: Original strand, 9705278 - 9705337
Alignment:
Q  8 caatcctcacctcacagaccgattttctggggttgtgttagacataaccacaatttctaa 67  Q
    ||||||||||||||||  ||| |||| ||||||||||||||||  |||||| ||||||||    
T  9705278 caatcctcacctcacaagccggttttgtggggttgtgttagacccaaccacgatttctaa 9705337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 69
Target Start/End: Original strand, 8026413 - 8026474
Alignment:
Q  8 caatcctcacctcacagaccgattttctggggttgtgttagacataaccacaatttctaata 69  Q
    ||||||||||||||||  ||| |||| |||||||||||||| |  |||||| ||||||||||    
T  8026413 caatcctcacctcacaagccggttttgtggggttgtgttaggcccaaccacgatttctaata 8026474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 69
Target Start/End: Original strand, 8026628 - 8026689
Alignment:
Q  8 caatcctcacctcacagaccgattttctggggttgtgttagacataaccacaatttctaata 69  Q
    ||||||||||||||||  ||| |||| |||||||||||||| |  |||||| ||||||||||    
T  8026628 caatcctcacctcacaagccggttttgtggggttgtgttaggcccaaccacgatttctaata 8026689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 69
Target Start/End: Original strand, 30256836 - 30256897
Alignment:
Q  8 caatcctcacctcacagaccgattttctggggttgtgttagacataaccacaatttctaata 69  Q
    ||||||||||||||||  ||| |||| |||||||||||||| |  |||||| ||||||||||    
T  30256836 caatcctcacctcacaagccggttttgtggggttgtgttaggcccaaccacgatttctaata 30256897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0400 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0400
Description:

Target: scaffold0400; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 8 - 69
Target Start/End: Original strand, 3869 - 3930
Alignment:
Q  8 caatcctcacctcacagaccgattttctggggttgtgttagacataaccacaatttctaata 69  Q
    ||||||||||||||||  ||  |||| |||||||||||||| || |||||||||||||||||    
T  3869 caatcctcacctcacaagccagttttgtggggttgtgttaggcacaaccacaatttctaata 3930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0365 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0365
Description:

Target: scaffold0365; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 8 - 69
Target Start/End: Original strand, 4513 - 4574
Alignment:
Q  8 caatcctcacctcacagaccgattttctggggttgtgttagacataaccacaatttctaata 69  Q
    ||||||||||||||||  ||  |||| |||||||||||||| || |||||||||||||||||    
T  4513 caatcctcacctcacaagccagttttgtggggttgtgttaggcacaaccacaatttctaata 4574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 8 - 69
Target Start/End: Original strand, 51589250 - 51589311
Alignment:
Q  8 caatcctcacctcacagaccgattttctggggttgtgttagacataaccacaatttctaata 69  Q
    ||||||||||||||||  ||| |||| |||||||||||||| | ||||||| ||||||||||    
T  51589250 caatcctcacctcacaagccggttttgtggggttgtgttaggcctaaccacgatttctaata 51589311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 8 - 69
Target Start/End: Original strand, 51589830 - 51589891
Alignment:
Q  8 caatcctcacctcacagaccgattttctggggttgtgttagacataaccacaatttctaata 69  Q
    ||||||||||||||||  |||||||| |||||||||||||| |  |||||| ||||||||||    
T  51589830 caatcctcacctcacaagccgattttgtggggttgtgttaggcccaaccacgatttctaata 51589891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 63
Target Start/End: Original strand, 16162956 - 16163012
Alignment:
Q  7 acaatcctcacctcacagaccgattttctggggttgtgttagacataaccacaattt 63  Q
    |||| |||||||||| | ||||||||| ||||||||||||||||  |||||||||||    
T  16162956 acaaacctcacctcataaaccgattttgtggggttgtgttagactcaaccacaattt 16163012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 69
Target Start/End: Complemental strand, 25137363 - 25137302
Alignment:
Q  8 caatcctcacctcacagaccgattttctggggttgtgttagacataaccacaatttctaata 69  Q
    |||||||||||||| |  ||| |||| |||||||||||||| |  |||||||||||||||||    
T  25137363 caatcctcacctcataagccggttttgtggggttgtgttaggcccaaccacaatttctaata 25137302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 69
Target Start/End: Original strand, 51589016 - 51589077
Alignment:
Q  8 caatcctcacctcacagaccgattttctggggttgtgttagacataaccacaatttctaata 69  Q
    ||||||||||||||||  ||| |||| |||||||||||||| |  |||||| ||||||||||    
T  51589016 caatcctcacctcacaagccggttttgtggggttgtgttaggcccaaccaccatttctaata 51589077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 8 - 48
Target Start/End: Complemental strand, 39348412 - 39348372
Alignment:
Q  8 caatcctcacctcacagaccgattttctggggttgtgttag 48  Q
    |||||||||||||||| |||| |||| ||||||||||||||    
T  39348412 caatcctcacctcacaaaccggttttgtggggttgtgttag 39348372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 67
Target Start/End: Complemental strand, 26272385 - 26272325
Alignment:
Q  7 acaatcctcacctcacagaccgattttctggggttgtgttagacataaccacaatttctaa 67  Q
    |||||| ||||||||||  | |||||| ||||||||||||||||  |||||||||||||||    
T  26272385 acaatcgtcacctcacaagctgattttgtggggttgtgttagacccaaccacaatttctaa 26272325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 72
Target Start/End: Original strand, 34610585 - 34610649
Alignment:
Q  8 caatcctcacctcacagaccgattttctggggttgtgttagacataaccacaatttctaatagta 72  Q
    ||||||||||||||||   || |||| ||||||||||||||||  ||||||||||||||| ||||    
T  34610585 caatcctcacctcacaagtcggttttgtggggttgtgttagacccaaccacaatttctaagagta 34610649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 8 - 67
Target Start/End: Original strand, 8018992 - 8019051
Alignment:
Q  8 caatcctcacctcacagaccgattttctggggttgtgttagacataaccacaatttctaa 67  Q
    ||||||||||||||||  ||| |||| |||||||||||||| |  |||||||||||||||    
T  8018992 caatcctcacctcacaagccggttttgtggggttgtgttaggcccaaccacaatttctaa 8019051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 8 - 67
Target Start/End: Original strand, 54368540 - 54368599
Alignment:
Q  8 caatcctcacctcacagaccgattttctggggttgtgttagacataaccacaatttctaa 67  Q
    ||||||||||||||||  ||| |||| ||||||||||||||||  |||||| ||||||||    
T  54368540 caatcctcacctcacaagccggttttatggggttgtgttagacccaaccacgatttctaa 54368599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 9 - 63
Target Start/End: Complemental strand, 13741160 - 13741106
Alignment:
Q  9 aatcctcacctcacagaccgattttctggggttgtgttagacataaccacaattt 63  Q
    |||||||||||||||  ||| |||| ||||||||||||||||  |||||||||||    
T  13741160 aatcctcacctcacaagccggttttttggggttgtgttagacccaaccacaattt 13741106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 69
Target Start/End: Original strand, 11589809 - 11589870
Alignment:
Q  8 caatcctcacctcacagaccgattttctggggttgtgttagacataaccacaatttctaata 69  Q
    ||||||||||||||||  ||| |||| |||||||||||||| |  |||||| ||||||||||    
T  11589809 caatcctcacctcacaagccggttttgtggggttgtgttaggcccaaccacgatttctaata 11589870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 48
Target Start/End: Complemental strand, 38791511 - 38791470
Alignment:
Q  7 acaatcctcacctcacagaccgattttctggggttgtgttag 48  Q
    ||||||||||||||||| | ||||||| ||||||||||||||    
T  38791511 acaatcctcacctcacaaatcgattttgtggggttgtgttag 38791470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 13574980 - 13574920
Alignment:
Q  9 aatcctcacctcacagaccgattttctggggttgtgttagacataaccacaatttctaata 69  Q
    |||||||||||||||  ||  |||| |||||||||||||| |  |||||||||||||||||    
T  13574980 aatcctcacctcacaagccagttttgtggggttgtgttaggcccaaccacaatttctaata 13574920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 8 - 67
Target Start/End: Original strand, 39743553 - 39743612
Alignment:
Q  8 caatcctcacctcacagaccgattttctggggttgtgttagacataaccacaatttctaa 67  Q
    ||||||||||||||||  |||||||| |||||||||||||| |  |||||| ||||||||    
T  39743553 caatcctcacctcacaagccgattttgtggggttgtgttaggcccaaccacgatttctaa 39743612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 8 - 66
Target Start/End: Original strand, 4828317 - 4828375
Alignment:
Q  8 caatcctcacctcacagaccgattttctggggttgtgttagacataaccacaatttcta 66  Q
    ||||||||||||||||  ||| |||| |||||||||||||| |  ||||||||||||||    
T  4828317 caatcctcacctcacaagccggttttgtggggttgtgttaggcccaaccacaatttcta 4828375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 9 - 67
Target Start/End: Original strand, 38476302 - 38476360
Alignment:
Q  9 aatcctcacctcacagaccgattttctggggttgtgttagacataaccacaatttctaa 67  Q
    |||||||||||||||  |||||||| ||||||||||||||   ||||||||| ||||||    
T  38476302 aatcctcacctcacaagccgattttgtggggttgtgttaggactaaccacaaattctaa 38476360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 69
Target Start/End: Original strand, 8716138 - 8716199
Alignment:
Q  8 caatcctcacctcacagaccgattttctggggttgtgttagacataaccacaatttctaata 69  Q
    |||||||||||||| |  |||||||| ||||||||||||||||  |||||  ||||||||||    
T  8716138 caatcctcacctcataagccgattttgtggggttgtgttagacccaaccaagatttctaata 8716199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 69
Target Start/End: Original strand, 17469842 - 17469903
Alignment:
Q  8 caatcctcacctcacagaccgattttctggggttgtgttagacataaccacaatttctaata 69  Q
    ||||||||||||||||  ||| |||| |||||||||||||| |  |||||| ||||||||||    
T  17469842 caatcctcacctcacaagccggttttgtggggttgtgttaggctcaaccacgatttctaata 17469903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 69
Target Start/End: Original strand, 17477089 - 17477150
Alignment:
Q  8 caatcctcacctcacagaccgattttctggggttgtgttagacataaccacaatttctaata 69  Q
    ||||||||||||||||  ||| |||| |||||||||||||| |  |||||| ||||||||||    
T  17477089 caatcctcacctcacaagccggttttgtggggttgtgttaggctcaaccacgatttctaata 17477150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 69
Target Start/End: Complemental strand, 19256646 - 19256585
Alignment:
Q  8 caatcctcacctcacagaccgattttctggggttgtgttagacataaccacaatttctaata 69  Q
    ||||||||||||||||  ||| |||| |||||||||||||| |  |||||| ||||||||||    
T  19256646 caatcctcacctcacaagccggttttgtggggttgtgttaggcccaaccacgatttctaata 19256585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 69
Target Start/End: Complemental strand, 24075366 - 24075305
Alignment:
Q  8 caatcctcacctcacagaccgattttctggggttgtgttagacataaccacaatttctaata 69  Q
    ||||||||||||||||  ||| |||| |||||||||||||| |  |||||| ||||||||||    
T  24075366 caatcctcacctcacaagccggttttgtggggttgtgttaggcccaaccacgatttctaata 24075305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 14 - 70
Target Start/End: Original strand, 4963384 - 4963440
Alignment:
Q  14 tcacctcacagaccgattttctggggttgtgttagacataaccacaatttctaatag 70  Q
    ||||||||||  ||| |||| |||||||||||||| |  ||||||||||||||||||    
T  4963384 tcacctcacaagccggttttgtggggttgtgttaggcccaaccacaatttctaatag 4963440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 8 - 72
Target Start/End: Original strand, 39960216 - 39960280
Alignment:
Q  8 caatcctcacctcacagaccgattttctggggttgtgttagacataaccacaatttctaatagta 72  Q
    ||||||||||||||||  ||| |||| |||||||||||||| |  |||||| |||||||| ||||    
T  39960216 caatcctcacctcacaagccggttttgtggggttgtgttaggcccaaccacgatttctaagagta 39960280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0766 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0766
Description:

Target: scaffold0766; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 65
Target Start/End: Original strand, 6298 - 6355
Alignment:
Q  8 caatcctcacctcacagaccgattttctggggttgtgttagacataaccacaatttct 65  Q
    ||||||||||||||||  |||||||| |||||||||||||| |  |||||| ||||||    
T  6298 caatcctcacctcacaagccgattttgtggggttgtgttaggcccaaccacgatttct 6355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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