View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5002-Insertion-3 (Length: 357)
Name: NF5002-Insertion-3
Description: NF5002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5002-Insertion-3 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 248; Significance: 1e-137; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 7 - 357
Target Start/End: Original strand, 54279089 - 54279447
Alignment:
| Q |
7 |
agtatcgtgattttctaaatgaaaagaagacattctgggaaactttgtttttgaagaaacactccgggaaacttaaatttgaatatttcaaaagggaaat |
106 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
54279089 |
agtattgtgattttctaaatgaaaagaagacattctgggaaactttgtttttgaagaaacactcctggaaacttaaatttgaatatttcaaaagggaaat |
54279188 |
T |
|
| Q |
107 |
gttgtatggagccagttctttctcaagatgataccatgacacgacatctgtgttttgtagcagagatgctaatttaaatccagccactcacgtattccgt |
206 |
Q |
| |
|
|||||||||||| | |||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |
|
|
| T |
54279189 |
gttgtatggagcgaattctttctcatgatgataccatgacacgacatctgtgttttgtagcagagacgctaatttaaatccagccactcatgtattccgt |
54279288 |
T |
|
| Q |
207 |
gaaaggaacatctaacggtagaaatgccttcatggaattacgttcacgacaaatagcaatgctcattaagaaac-tatgaagggtcaaat---ttaat-- |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| | | | || |||| || || |
|
|
| T |
54279289 |
gaaaggaacatctaacggtagaaatgccttcatggaattacgttcacgacaaatagcaatgctcactaaggaacatctaacggtagaaatgccttcatgg |
54279388 |
T |
|
| Q |
301 |
--ttaccaggtttctacttctccatgtgtattccctctctacaactactcaacataatt |
357 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
54279389 |
aattaccaggtttctacttatccatgtgtattccctctctacaactagtcaacataatt |
54279447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 224
Target Start/End: Complemental strand, 25981046 - 25980997
Alignment:
| Q |
175 |
ctaatttaaatccagccactcacgtattccgtgaaaggaacatctaacgg |
224 |
Q |
| |
|
|||||||| ||||| |||| || |||||||||||||||| |||||||||| |
|
|
| T |
25981046 |
ctaatttacatccaaccacccatgtattccgtgaaaggagcatctaacgg |
25980997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University