View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5002-Insertion-4 (Length: 296)
Name: NF5002-Insertion-4
Description: NF5002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5002-Insertion-4 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 8 - 296
Target Start/End: Original strand, 52584056 - 52584359
Alignment:
| Q |
8 |
atattagggttctgaaatttcatgttaggatccaaaggaaactgctgttgagaccaaaccttgttattatatccaccaccgccacgattctgggtcatca |
107 |
Q |
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| T |
52584056 |
atattagggttctgaaatttcatgttaggatccaaaggaagctgctgttgagaccaaaccttgttattatatccaccaccgccacgattctgggtcatca |
52584155 |
T |
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| Q |
108 |
tcggaggagga---------agctgttgttgattctgactcatcatcttcatctgtggttggtgagagagtaactgagattgt------tgttgctgaga |
192 |
Q |
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| T |
52584156 |
tcggaggaggaggaggaggaagctgttgttgattctgactcatcatcttcatctgtggttggtgagagagtaactgaggttgttgttgttgttgctgaga |
52584255 |
T |
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| Q |
193 |
ttggttattgattacctgaggcggaggattcatcatctgaggattcatcatctgagactggttcatcttgttcaaattcatcatcatctgagattgatcg |
292 |
Q |
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| T |
52584256 |
ttggttgttgattacctgaggcggaggattcatcatctgaggattcatcatctgagactggttcatcttgttcaaattcatcatcatctgagattgatcg |
52584355 |
T |
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| Q |
293 |
ttca |
296 |
Q |
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| T |
52584356 |
ttca |
52584359 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 67; Significance: 8e-30; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 9 - 87
Target Start/End: Original strand, 54108999 - 54109077
Alignment:
| Q |
9 |
tattagggttctgaaatttcatgttaggatccaaaggaaactgctgttgagaccaaaccttgttattatatccaccacc |
87 |
Q |
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| T |
54108999 |
tattagggttctgaaatttcatgttaggatccagaggaagctgctgttgagaccaaaccttgttattatattcaccacc |
54109077 |
T |
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