View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5002_high_3 (Length: 254)
Name: NF5002_high_3
Description: NF5002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5002_high_3 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 11 - 254
Target Start/End: Original strand, 41736819 - 41737063
Alignment:
| Q |
11 |
caaaggttggttgtgaagaaaagcaataatgttcaaaacaatggggttagagtaattgtggttgatcgaaatggaaagggagattctaaaactgttcaag |
110 |
Q |
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| T |
41736819 |
caaaggttggttgtgaagaaaagcaataatgttcaaaacaatgtggttagagtaattgtggttgatcgaaatggaaagggagattctaaaactgttcaag |
41736918 |
T |
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| Q |
111 |
gtgcagttgatttggttcctaatggaaacaaacaaagagtcaaaatctacatttttccaggaacttacaggtatgtaattacgtagtaa-nnnnnnnnat |
209 |
Q |
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| T |
41736919 |
gtgcagttgatttggttcctaatggaaacaaacaaagagtcaaaatctacatttttccaggaacttacaggtatgtaattacgtagtaatttttttttat |
41737018 |
T |
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| Q |
210 |
atgtagaaaactatgaagcgccaacacagacaccagacacgacac |
254 |
Q |
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| T |
41737019 |
atgtagaaaactatgaagcgccaatacagacaccagacacgacac |
41737063 |
T |
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