View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5002_low_1 (Length: 501)
Name: NF5002_low_1
Description: NF5002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5002_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 455; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 23 - 485
Target Start/End: Original strand, 52583598 - 52584060
Alignment:
| Q |
23 |
gaacatctctcagcctaatcaaacccttcatggacccgtatccatccacaccccactcttccttcgccatgtctcccaaaatctccctcgaaggagacaa |
122 |
Q |
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| T |
52583598 |
gaacatctctcagcctaatcaaacccttcatggacccgtatccatccacaccccactcttccttcgccatgtctcccaaaatctccctcgaaggagacaa |
52583697 |
T |
|
| Q |
123 |
aataggtgtaggcaacacggacggagtcacaggacaaggtgatacaagcgatgcaataccaccagatttcttagcacgaataataaaggaagtggtattc |
222 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52583698 |
aataggtgtaggcaacacggccggagtcacaggacaaggtgatacaagcgatgcaataccaccagatttcttagcacgaataataaaggaagtggtattc |
52583797 |
T |
|
| Q |
223 |
ctaggagcataaggagcaaatctagcattaaacttcttcttagggtaaaacttacgcgctttcaaacgattctgagattgtaactcatgaagagttggtg |
322 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52583798 |
ctaggagcataaggagcaaatctagcattaaacttcttcttagggtaaaacttacgcgctttcaaacgattctgagattgtaactcatgaagagttggtg |
52583897 |
T |
|
| Q |
323 |
gttggtaaccaacaatattatttggaatacccatggaaatagtctggttgggtttttccattctcctaatatctttgcgcttgtcgctaaccttctttcc |
422 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52583898 |
gttggtaaccaacaatattatttggaatacccatggaaatagtctggttgggtttatccattctcctaatatctttgcgcttgtcgctaaccttctttcc |
52583997 |
T |
|
| Q |
423 |
cttccagttattgttattattacttcttcccggcttcaaattaggaaaattatgtttgatatt |
485 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52583998 |
cttccagttattgttattattacttcttcccggcttcaaattaggaaaattatgtttgatatt |
52584060 |
T |
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