View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5002_low_4 (Length: 246)

Name: NF5002_low_4
Description: NF5002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5002_low_4
NF5002_low_4
[»] chr1 (5 HSPs)
chr1 (23-246)||(31035938-31036161)
chr1 (23-246)||(31028968-31029191)
chr1 (24-218)||(31041162-31041359)
chr1 (54-137)||(31026242-31026328)
chr1 (213-244)||(31041109-31041140)


Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 23 - 246
Target Start/End: Complemental strand, 31036161 - 31035938
Alignment:
Q  23 tattctttcattcatattttctgtgtatttctaatttatatttaacaaaatctcttgaccaatatttcaatatagagtacattatacttccgttttttga 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  31036161 tattctttcattcatattttctgtgtatttctaatttatatttaacaaaatctcttgaccaatatttcaatatagagtacattatacttccgtttcttga 31036062  T
Q  123 gtgatgattaaattatacttcattctctattatattaaaacatacactcttctcctcttttgggcaaaatatattagaaaaaatatatattttcctccct 222  Q
    ||||||||||||||| ||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| ||||    
T  31036061 gtgatgattaaattacacttcattctctattatgttaaaacatacaatcttctcctcttttgggcaaaatatattaggaaaaatatatattttccaccct 31035962  T
Q  223 taataaacactttattccatttta 246  Q
    ||||||||||||||||||||||||    
T  31035961 taataaacactttattccatttta 31035938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 23 - 246
Target Start/End: Complemental strand, 31029191 - 31028968
Alignment:
Q  23 tattctttcattcatattttctgtgtatttctaatttatatttaacaaaatctcttgaccaatatttcaatatagagtacattatacttccgttttttga 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  31029191 tattctttcattcatattttctgtgtatttctaatttatatttaacaaaatctcttgaccaatatttcaatatagagtacattatacttccgtttcttga 31029092  T
Q  123 gtgatgattaaattatacttcattctctattatattaaaacatacactcttctcctcttttgggcaaaatatattagaaaaaatatatattttcctccct 222  Q
    ||||||||||||||| ||| ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| ||||    
T  31029091 gtgatgattaaattacactacattctctattatgttaaaacatacaatcttctcctcttttgggcaaaatatattaggaaaaatatatattttccaccct 31028992  T
Q  223 taataaacactttattccatttta 246  Q
    ||||||||||||||||||||||||    
T  31028991 taataaacactttattccatttta 31028968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 24 - 218
Target Start/End: Complemental strand, 31041359 - 31041162
Alignment:
Q  24 attctttcattcatattttctgtgtatttctaatttatattt---aacaaaatctcttgaccaat-atttcaatatagagtacattatacttccgttttt 119  Q
    ||||||||||||||||| | ||||||| |||||||||||||    |||||||| ||||||||||  ||||  || ||||||  ||||||||| |  || |    
T  31041359 attctttcattcatattct-tgtgtatgtctaatttatattattgaacaaaatttcttgaccaaacattttgatttagagttaattatactttcacttat 31041261  T
Q  120 tgagtgatgattaaattatacttcattctctattatattaaaacatacactcttctcctcttttgggcaaaatatattagaaaaaatatatattttcct 218  Q
    ||| | ||  |||||||| ||  || ||||| |||  ||||||||||| |||||||| ||||||| ||| ||||||||| ||| | |||||||| ||||    
T  31041260 tgaattattcttaaattacaccacaatctctcttacgttaaaacatacgctcttctcttcttttgtgcacaatatattaaaaatagtatatattctcct 31041162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 137
Target Start/End: Complemental strand, 31026328 - 31026242
Alignment:
Q  54 taatttatatttaacaaaat---ctcttgaccaatatttcaatatagagtacattatacttccgttttttgagtgatgattaaatta 137  Q
    |||||||||||||| |||||   ||||| ||||||||||| || ||||||||||||||||| |  || |||| ||||| ||||||||    
T  31026328 taatttatatttaataaaatgatctctttaccaatatttcgatgtagagtacattatactttcagttcttgaatgatgcttaaatta 31026242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 213 - 244
Target Start/End: Complemental strand, 31041140 - 31041109
Alignment:
Q  213 tttcctcccttaataaacactttattccattt 244  Q
    ||||||||||||||||||||||||||||||||    
T  31041140 tttcctcccttaataaacactttattccattt 31041109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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