View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5003_low_1 (Length: 564)
Name: NF5003_low_1
Description: NF5003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5003_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 454; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 13 - 548
Target Start/End: Original strand, 53635365 - 53635904
Alignment:
| Q |
13 |
atcaaatgtgacttattgattgatataatgataaaaatatatttatgcacagtgtgacttatttacttgtgcacacattagacaaatcaaacatcatttg |
112 |
Q |
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| T |
53635365 |
atcaaatgtgacttattgattgatataatgataaaaatatatttatgcacaatgtgacttatttacttgtgcacacat-----aaatcaaacatcatttg |
53635459 |
T |
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| Q |
113 |
ttattgag----tgtatttcaccatctgaattctacaacgtttcacatatttttggagtatacttctaaacagggacgaaaggacatgttatgttctagg |
208 |
Q |
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| T |
53635460 |
ttattgagtgagtgtatttcaccatctgaattctacaacgattcacatatttttggagtatacttctaaacagggacgaaaggacatgttatgttctagg |
53635559 |
T |
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| Q |
209 |
ggataaagccttgctccctttttacattattctatatgtatccaccatgtgatgttttgtactctgattttgtctttttgc------agaagaagaagaa |
302 |
Q |
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| T |
53635560 |
ggataaagccttgctccctttttacattattctatatgtatccaccgtgtgatgttttgtactctgattttgtctttttgcagaagaagaagaagaagaa |
53635659 |
T |
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| Q |
303 |
gatctagaacggaacttcaggagaattcgtccacaattatgagttagaaaaatgtggttttaacgatctcttccttagtttaaaccaaatgagttttgtg |
402 |
Q |
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| T |
53635660 |
gatctagaac-aaacttcaggagaattcgtccacaattatgagctagaaaaatgtggttttaacgatctcttccttagtttaaaccaaatgagttttgtg |
53635758 |
T |
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| Q |
403 |
aagtacaatatttatactttaagctctagcaaatatcatcgtatgaatgttgaattatgcttcagggatggatttggcgtatttacgagagccaaaacac |
502 |
Q |
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| T |
53635759 |
aagtacaatatttatactttaatctctagcaaatatcatcgtatgaatgttgaattatgcttcagggatggatttggcgtatttacgagagccaaaacac |
53635858 |
T |
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| Q |
503 |
attatatccaaatcactcttgtagttttgttccaatagccaacaac |
548 |
Q |
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| T |
53635859 |
attatatccaaatcactcttgtagttttgttccaatagccaacaac |
53635904 |
T |
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