View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5003_low_2 (Length: 437)

Name: NF5003_low_2
Description: NF5003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5003_low_2
NF5003_low_2
[»] chr8 (17 HSPs)
chr8 (19-251)||(5873312-5873544)
chr8 (250-342)||(42434522-42434613)
chr8 (257-336)||(40004718-40004796)
chr8 (252-336)||(17232843-17232925)
chr8 (259-298)||(19784278-19784317)
chr8 (259-298)||(23396484-23396523)
chr8 (259-298)||(41451112-41451151)
chr8 (259-298)||(9852277-9852316)
chr8 (259-298)||(34648148-34648187)
chr8 (259-298)||(40023282-40023321)
chr8 (259-298)||(7857687-7857726)
chr8 (259-298)||(10237361-10237400)
chr8 (259-298)||(15227037-15227076)
chr8 (259-298)||(30413921-30413960)
chr8 (259-298)||(41099189-41099228)
chr8 (259-298)||(43690647-43690686)
chr8 (266-298)||(10443590-10443622)
[»] chr4 (25 HSPs)
chr4 (252-360)||(805102-805210)
chr4 (257-336)||(14499251-14499329)
chr4 (252-342)||(50070714-50070803)
chr4 (259-334)||(29825716-29825790)
chr4 (249-346)||(55782592-55782689)
chr4 (249-346)||(55846772-55846869)
chr4 (259-298)||(1621882-1621921)
chr4 (259-298)||(10472504-10472543)
chr4 (259-298)||(11785981-11786020)
chr4 (259-298)||(11798148-11798187)
chr4 (259-298)||(13635745-13635784)
chr4 (259-298)||(20861587-20861626)
chr4 (259-298)||(49492532-49492571)
chr4 (259-298)||(55765488-55765527)
chr4 (259-298)||(15051156-15051195)
chr4 (259-298)||(27865757-27865796)
chr4 (259-298)||(30357814-30357853)
chr4 (259-298)||(30597706-30597745)
chr4 (259-298)||(35291568-35291607)
chr4 (259-298)||(36011850-36011889)
chr4 (259-298)||(38010148-38010187)
chr4 (259-298)||(46672446-46672485)
chr4 (259-298)||(49426077-49426116)
chr4 (259-298)||(51921285-51921324)
chr4 (262-298)||(26578209-26578245)
[»] chr2 (14 HSPs)
chr2 (252-346)||(27974243-27974337)
chr2 (252-346)||(28060772-28060866)
chr2 (251-346)||(21155433-21155528)
chr2 (257-336)||(44340259-44340337)
chr2 (259-298)||(2263580-2263619)
chr2 (259-298)||(7487274-7487313)
chr2 (259-298)||(8149838-8149877)
chr2 (259-298)||(8154462-8154501)
chr2 (259-298)||(9143592-9143631)
chr2 (259-298)||(15016586-15016625)
chr2 (259-298)||(18762874-18762913)
chr2 (259-298)||(34464718-34464757)
chr2 (259-298)||(39355042-39355081)
chr2 (259-292)||(41346066-41346099)
[»] chr1 (19 HSPs)
chr1 (257-346)||(37228316-37228405)
chr1 (252-332)||(41033912-41033992)
chr1 (257-323)||(19861692-19861757)
chr1 (259-298)||(6314122-6314161)
chr1 (259-298)||(20434742-20434781)
chr1 (259-298)||(4097928-4097967)
chr1 (259-298)||(21256792-21256831)
chr1 (259-298)||(23175542-23175581)
chr1 (259-298)||(25889048-25889087)
chr1 (259-298)||(49936957-49936996)
chr1 (259-298)||(50351810-50351849)
chr1 (260-298)||(34369668-34369706)
chr1 (259-298)||(11421601-11421640)
chr1 (259-298)||(19897780-19897819)
chr1 (259-298)||(20507301-20507340)
chr1 (259-298)||(24635933-24635972)
chr1 (259-298)||(43452549-43452588)
chr1 (259-298)||(48762351-48762390)
chr1 (266-298)||(31529685-31529717)
[»] scaffold0455 (1 HSPs)
scaffold0455 (257-336)||(10651-10729)
[»] chr6 (11 HSPs)
chr6 (257-336)||(28132745-28132823)
chr6 (257-336)||(22030108-22030186)
chr6 (259-298)||(1449549-1449588)
chr6 (259-298)||(15493181-15493220)
chr6 (259-298)||(30908659-30908698)
chr6 (259-298)||(31216669-31216708)
chr6 (251-336)||(18755657-18755741)
chr6 (259-298)||(1536916-1536955)
chr6 (259-298)||(6900810-6900849)
chr6 (259-298)||(7089089-7089128)
chr6 (259-290)||(34870114-34870145)
[»] chr5 (10 HSPs)
chr5 (252-346)||(25189817-25189911)
chr5 (257-336)||(16223431-16223509)
chr5 (259-298)||(3884055-3884094)
chr5 (259-298)||(26637857-26637896)
chr5 (259-298)||(30783442-30783481)
chr5 (259-298)||(13552990-13553029)
chr5 (259-298)||(14394475-14394514)
chr5 (259-298)||(14940376-14940415)
chr5 (259-298)||(15416671-15416710)
chr5 (259-298)||(37456687-37456726)
[»] scaffold0154 (1 HSPs)
scaffold0154 (252-342)||(37439-37528)
[»] scaffold0221 (1 HSPs)
scaffold0221 (252-336)||(20479-20562)
[»] scaffold0050 (1 HSPs)
scaffold0050 (257-346)||(20977-21066)
[»] chr7 (13 HSPs)
chr7 (250-342)||(25779664-25779755)
chr7 (259-298)||(763704-763743)
chr7 (259-298)||(16933264-16933303)
chr7 (259-298)||(16938647-16938686)
chr7 (259-296)||(24359878-24359915)
chr7 (259-298)||(11732667-11732706)
chr7 (259-298)||(20000694-20000733)
chr7 (259-298)||(30884242-30884281)
chr7 (259-298)||(31660076-31660115)
chr7 (259-298)||(41911129-41911168)
chr7 (259-298)||(46358527-46358566)
chr7 (266-298)||(5757400-5757432)
chr7 (266-298)||(34875503-34875535)
[»] scaffold0571 (1 HSPs)
scaffold0571 (259-298)||(696-735)
[»] scaffold0045 (1 HSPs)
scaffold0045 (259-298)||(33691-33730)
[»] chr3 (17 HSPs)
chr3 (259-298)||(51846800-51846839)
chr3 (278-336)||(17620772-17620830)
chr3 (252-336)||(40220751-40220833)
chr3 (259-298)||(9106274-9106313)
chr3 (259-298)||(9596000-9596039)
chr3 (259-298)||(26662558-26662597)
chr3 (259-298)||(30947931-30947970)
chr3 (259-298)||(33414033-33414072)
chr3 (259-298)||(34563367-34563406)
chr3 (259-298)||(3475427-3475466)
chr3 (259-298)||(6097704-6097743)
chr3 (259-298)||(19284678-19284717)
chr3 (259-298)||(41192370-41192409)
chr3 (259-298)||(46237778-46237817)
chr3 (259-298)||(47335039-47335078)
chr3 (259-298)||(54379170-54379209)
chr3 (252-305)||(8054963-8055015)
[»] scaffold1251 (1 HSPs)
scaffold1251 (251-336)||(399-480)
[»] scaffold0581 (1 HSPs)
scaffold0581 (259-298)||(8441-8480)
[»] scaffold0074 (1 HSPs)
scaffold0074 (259-298)||(24281-24320)


Alignment Details
Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 19 - 251
Target Start/End: Complemental strand, 5873544 - 5873312
Alignment:
Q  19 aaggaatcaacgacgaggccaaggaaggagacgttgagagggagagtggtgtaggatactgtagtgctgatgaattggcggagggattcgaagaggaggt 118  Q
    ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5873544 aaggaatcaacaacgaggccgaggaaggagacgttgagagggagagtggtgtaggatactgtagtgctgatgaattggcggagggattcgaagaggaggt 5873445  T
Q  119 ttacaagatattatgcaggtaaaatttctatcacnnnnnnntaaaacatgcaaaatggttgtgctagttaacttgttgcaagtaattatagtgaagcaaa 218  Q
    ||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||    
T  5873444 ttacaagatattatgcaggtaaaatttctatcacaaaaaaataaaacatgcaaaatggttgtgcgagttaacttgttgcaagtaattacagtgacgcaaa 5873345  T
Q  219 gatattaaagttatcggtggtggtgggtctgag 251  Q
    |||||||||||||||||||||||||||||||||    
T  5873344 gatattaaagttatcggtggtggtgggtctgag 5873312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 250 - 342
Target Start/End: Complemental strand, 42434613 - 42434522
Alignment:
Q  250 aggggattggttatggtgcataagccatttccttatgcaccgtgcataattgctttctacacctaaaaccattttgtcatacacccctcaaac 342  Q
    |||||| |||||||||||||||||  |||||||||||||||||||||||||||||  ||||||| || ||||||||||||||||||| |||||    
T  42434613 aggggagtggttatggtgcataagg-atttccttatgcaccgtgcataattgcttcatacacctcaacccattttgtcatacaccccccaaac 42434522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 257 - 336
Target Start/End: Original strand, 40004718 - 40004796
Alignment:
Q  257 tggttatggtgcataagccatttccttatgcaccgtgcataattgctttctacacctaaaaccattttgtcatacacccc 336  Q
    |||||||||||||||||  |||||||||||||||||||||||||||||  ||||||  || |||||||||||||||||||    
T  40004718 tggttatggtgcataagg-atttccttatgcaccgtgcataattgcttcttacaccccaatccattttgtcatacacccc 40004796  T

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Target: chr8; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 252 - 336
Target Start/End: Complemental strand, 17232925 - 17232843
Alignment:
Q  252 gggattggttatggtgcataagccatttccttatgcaccgtgcataattgctttctacacctaaaaccattttgtcatacacccc 336  Q
    |||| |||||||||||||||||  || || ||||||||||||||||||||||| |||||||| || |||||||||||||||||||    
T  17232925 gggagtggttatggtgcataagg-atatc-ttatgcaccgtgcataattgcttcctacacctcaacccattttgtcatacacccc 17232843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 259 - 298
Target Start/End: Original strand, 19784278 - 19784317
Alignment:
Q  259 gttatggtgcataagccatttccttatgcaccgtgcataa 298  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  19784278 gttatggtgcataagccatttccttatgcaccgtgcataa 19784317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 259 - 298
Target Start/End: Original strand, 23396484 - 23396523
Alignment:
Q  259 gttatggtgcataagccatttccttatgcaccgtgcataa 298  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  23396484 gttatggtgcataagccatttccttatgcaccgtgcataa 23396523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 259 - 298
Target Start/End: Original strand, 41451112 - 41451151
Alignment:
Q  259 gttatggtgcataagccatttccttatgcaccgtgcataa 298  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  41451112 gttatggtgcataagccatttccttatgcaccgtgcataa 41451151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 259 - 298
Target Start/End: Original strand, 9852277 - 9852316
Alignment:
Q  259 gttatggtgcataagccatttccttatgcaccgtgcataa 298  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  9852277 gttatggtgcataagtcatttccttatgcaccgtgcataa 9852316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 259 - 298
Target Start/End: Complemental strand, 34648187 - 34648148
Alignment:
Q  259 gttatggtgcataagccatttccttatgcaccgtgcataa 298  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  34648187 gttatggtgcataagtcatttccttatgcaccgtgcataa 34648148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 259 - 298
Target Start/End: Complemental strand, 40023321 - 40023282
Alignment:
Q  259 gttatggtgcataagccatttccttatgcaccgtgcataa 298  Q
    ||||||||||||||||||||||||||| ||||||||||||    
T  40023321 gttatggtgcataagccatttccttatacaccgtgcataa 40023282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 259 - 298
Target Start/End: Original strand, 7857687 - 7857726
Alignment:
Q  259 gttatggtgcataagccatttccttatgcaccgtgcataa 298  Q
    ||||||||||||||||||||| ||||||| ||||||||||    
T  7857687 gttatggtgcataagccattttcttatgcgccgtgcataa 7857726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 259 - 298
Target Start/End: Original strand, 10237361 - 10237400
Alignment:
Q  259 gttatggtgcataagccatttccttatgcaccgtgcataa 298  Q
    |||||||||||||||  |||||||||||||||||||||||    
T  10237361 gttatggtgcataagttatttccttatgcaccgtgcataa 10237400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 259 - 298
Target Start/End: Original strand, 15227037 - 15227076
Alignment:
Q  259 gttatggtgcataagccatttccttatgcaccgtgcataa 298  Q
    |||||||||||||||  |||||||||||||||||||||||    
T  15227037 gttatggtgcataagttatttccttatgcaccgtgcataa 15227076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 259 - 298
Target Start/End: Original strand, 30413921 - 30413960
Alignment:
Q  259 gttatggtgcataagccatttccttatgcaccgtgcataa 298  Q
    |||||| |||||||| ||||||||||||||||||||||||    
T  30413921 gttatgctgcataagtcatttccttatgcaccgtgcataa 30413960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 259 - 298
Target Start/End: Original strand, 41099189 - 41099228
Alignment:
Q  259 gttatggtgcataagccatttccttatgcaccgtgcataa 298  Q
    |||||||||||||||  |||||||||||||||||||||||    
T  41099189 gttatggtgcataagttatttccttatgcaccgtgcataa 41099228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 259 - 298
Target Start/End: Original strand, 43690647 - 43690686
Alignment:
Q  259 gttatggtgcataagccatttccttatgcaccgtgcataa 298  Q
    |||||||||||||||  |||||||||||||||||||||||    
T  43690647 gttatggtgcataagttatttccttatgcaccgtgcataa 43690686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 266 - 298
Target Start/End: Complemental strand, 10443622 - 10443590
Alignment:
Q  266 tgcataagccatttccttatgcaccgtgcataa 298  Q
    ||||||||||||||||||||||||| |||||||    
T  10443622 tgcataagccatttccttatgcaccctgcataa 10443590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 89; Significance: 9e-43; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 252 - 360
Target Start/End: Original strand, 805102 - 805210
Alignment:
Q  252 gggattggttatggtgcataagccatttccttatgcaccgtgcataattgctttctacacctaaaaccattttgtcatacacccctcaaaccaaatcaaa 351  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| ||||||||| ||||    
T  805102 gggagtggttatggtgcataagccatttccttatgcaccgtgcataattgcttcctacacccaaaaccattttgtcatacaccccccaaaccaaaccaaa 805201  T
Q  352 ctaagccca 360  Q
    |||||||||    
T  805202 ctaagccca 805210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 257 - 336
Target Start/End: Original strand, 14499251 - 14499329
Alignment:
Q  257 tggttatggtgcataagccatttccttatgcaccgtgcataattgctttctacacctaaaaccattttgtcatacacccc 336  Q
    |||||||||||||||||  ||||||||||||||||||||||||||||| |||||||  || |||||||||||||||||||    
T  14499251 tggttatggtgcataagg-atttccttatgcaccgtgcataattgcttcctacaccccaacccattttgtcatacacccc 14499329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 252 - 342
Target Start/End: Original strand, 50070714 - 50070803
Alignment:
Q  252 gggattggttatggtgcataagccatttccttatgcaccgtgcataattgctttctacacctaaaaccattttgtcatacacccctcaaac 342  Q
    |||| |||||||||||||||||  |||||||||||||||||||||||||||||  ||||||| || ||||||| ||||||||||| |||||    
T  50070714 gggagtggttatggtgcataagg-atttccttatgcaccgtgcataattgcttcatacacctcaacccattttttcatacaccccccaaac 50070803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 259 - 334
Target Start/End: Original strand, 29825716 - 29825790
Alignment:
Q  259 gttatggtgcataagccatttccttatgcaccgtgcataattgctttctacacctaaaaccattttgtcatacacc 334  Q
    |||||||||||||||  |||||||||||||||||||||||||||||  ||||||| || |||||||| ||||||||    
T  29825716 gttatggtgcataagg-atttccttatgcaccgtgcataattgcttcatacacctcaacccattttgccatacacc 29825790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 249 - 346
Target Start/End: Complemental strand, 55782689 - 55782592
Alignment:
Q  249 gaggggattggttatggtgcataagccatttccttatgcaccgtgcataattgc-tttctacacctaaaaccattttgtcatacacccctcaaaccaaa 346  Q
    ||||||| |||||||||||||||||  ||||||||||||||||||||||||||| |   ||||||  || ||||||||||||||||||  |||||||||    
T  55782689 gaggggagtggttatggtgcataagg-atttccttatgcaccgtgcataattgcataattacaccccaatccattttgtcatacaccctccaaaccaaa 55782592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 249 - 346
Target Start/End: Complemental strand, 55846869 - 55846772
Alignment:
Q  249 gaggggattggttatggtgcataagccatttccttatgcaccgtgcataattgc-tttctacacctaaaaccattttgtcatacacccctcaaaccaaa 346  Q
    ||||||| |||||||||||||||||  ||||||||||||||||||||||||||| |   ||||||  || ||||||||||||||||||  |||||||||    
T  55846869 gaggggagtggttatggtgcataagg-atttccttatgcaccgtgcataattgcataattacaccccaatccattttgtcatacaccctccaaaccaaa 55846772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 259 - 298
Target Start/End: Original strand, 1621882 - 1621921
Alignment:
Q  259 gttatggtgcataagccatttccttatgcaccgtgcataa 298  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  1621882 gttatggtgcataagccatttccttatgcaccgtgcataa 1621921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 259 - 298
Target Start/End: Original strand, 10472504 - 10472543
Alignment:
Q  259 gttatggtgcataagccatttccttatgcaccgtgcataa 298  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  10472504 gttatggtgcataagtcatttccttatgcaccgtgcataa 10472543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 259 - 298
Target Start/End: Original strand, 11785981 - 11786020
Alignment:
Q  259 gttatggtgcataagccatttccttatgcaccgtgcataa 298  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  11785981 gttatggtgcataaaccatttccttatgcaccgtgcataa 11786020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 259 - 298
Target Start/End: Original strand, 11798148 - 11798187
Alignment:
Q  259 gttatggtgcataagccatttccttatgcaccgtgcataa 298  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  11798148 gttatggtgcataaaccatttccttatgcaccgtgcataa 11798187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 259 - 298
Target Start/End: Complemental strand, 13635784 - 13635745
Alignment:
Q  259 gttatggtgcataagccatttccttatgcaccgtgcataa 298  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  13635784 gttatggtgcataagtcatttccttatgcaccgtgcataa 13635745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 259 - 298
Target Start/End: Original strand, 20861587 - 20861626
Alignment:
Q  259 gttatggtgcataagccatttccttatgcaccgtgcataa 298  Q
    ||||||||||||||||||||||||||||| ||||||||||    
T  20861587 gttatggtgcataagccatttccttatgcgccgtgcataa 20861626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 259 - 298
Target Start/End: Complemental strand, 49492571 - 49492532
Alignment:
Q  259 gttatggtgcataagccatttccttatgcaccgtgcataa 298  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  49492571 gttatggtgcataagtcatttccttatgcaccgtgcataa 49492532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 259 - 298
Target Start/End: Original strand, 55765488 - 55765527
Alignment:
Q  259 gttatggtgcataagccatttccttatgcaccgtgcataa 298  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  55765488 gttatggtgcataagtcatttccttatgcaccgtgcataa 55765527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 259 - 298
Target Start/End: Complemental strand, 15051195 - 15051156
Alignment:
Q  259 gttatggtgcataagccatttccttatgcaccgtgcataa 298  Q
    |||||||||||||||  |||||||||||||||||||||||    
T  15051195 gttatggtgcataagttatttccttatgcaccgtgcataa 15051156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 259 - 298
Target Start/End: Complemental strand, 27865796 - 27865757
Alignment:
Q  259 gttatggtgcataagccatttccttatgcaccgtgcataa 298  Q
    ||||| ||||||||||||||||| ||||||||||||||||    
T  27865796 gttatagtgcataagccatttccatatgcaccgtgcataa 27865757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 259 - 298
Target Start/End: Original strand, 30357814 - 30357853
Alignment:
Q  259 gttatggtgcataagccatttccttatgcaccgtgcataa 298  Q
    |||||||| |||||| ||||||||||||||||||||||||    
T  30357814 gttatggttcataagtcatttccttatgcaccgtgcataa 30357853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 259 - 298
Target Start/End: Original strand, 30597706 - 30597745
Alignment:
Q  259 gttatggtgcataagccatttccttatgcaccgtgcataa 298  Q
    |||||||||||||||  |||||||||||||||||||||||    
T  30597706 gttatggtgcataagttatttccttatgcaccgtgcataa 30597745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 259 - 298
Target Start/End: Complemental strand, 35291607 - 35291568
Alignment:
Q  259 gttatggtgcataagccatttccttatgcaccgtgcataa 298  Q
    |||||||||||||||  |||||||||||||||||||||||    
T  35291607 gttatggtgcataagttatttccttatgcaccgtgcataa 35291568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 259 - 298
Target Start/End: Original strand, 36011850 - 36011889
Alignment:
Q  259 gttatggtgcataagccatttccttatgcaccgtgcataa 298  Q
    |||||||||||||||  |||||||||||||||||||||||    
T  36011850 gttatggtgcataagttatttccttatgcaccgtgcataa 36011889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 259 - 298
Target Start/End: Original strand, 38010148 - 38010187
Alignment:
Q  259 gttatggtgcataagccatttccttatgcaccgtgcataa 298  Q
    ||||||||||||||| |||||||||||||||| |||||||    
T  38010148 gttatggtgcataagtcatttccttatgcaccatgcataa 38010187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 259 - 298
Target Start/End: Original strand, 46672446 - 46672485
Alignment:
Q  259 gttatggtgcataagccatttccttatgcaccgtgcataa 298  Q
    |||||||||||||||  |||||||||||||||||||||||    
T  46672446 gttatggtgcataagttatttccttatgcaccgtgcataa 46672485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 259 - 298
Target Start/End: Complemental strand, 49426116 - 49426077
Alignment:
Q  259 gttatggtgcataagccatttccttatgcaccgtgcataa 298  Q
    |||||||||||||||  |||||||||||||||||||||||    
T  49426116 gttatggtgcataagttatttccttatgcaccgtgcataa 49426077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 259 - 298
Target Start/End: Complemental strand, 51921324 - 51921285
Alignment:
Q  259 gttatggtgcataagccatttccttatgcaccgtgcataa 298  Q
    |||||||||||||||  |||||||||||||||||||||||    
T  51921324 gttatggtgcataagttatttccttatgcaccgtgcataa 51921285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 262 - 298
Target Start/End: Complemental strand, 26578245 - 26578209
Alignment:
Q  262 atggtgcataagccatttccttatgcaccgtgcataa 298  Q
    ||||||||||||||||||| ||||||| |||||||||    
T  26578245 atggtgcataagccatttctttatgcatcgtgcataa 26578209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 79; Significance: 9e-37; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 252 - 346
Target Start/End: Complemental strand, 27974337 - 27974243
Alignment:
Q  252 gggattggttatggtgcataagccatttccttatgcaccgtgcataattgctttctacacctaaaaccattttgtcatacacccctcaaaccaaa 346  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |||||||||    
T  27974337 gggagtggttatggtgcataagccatttccttatgcaccgtgcataattgcttcctacacccaaaaccattttgtcatacaccccccaaaccaaa 27974243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 252 - 346
Target Start/End: Complemental strand, 28060866 - 28060772
Alignment:
Q  252 gggattggttatggtgcataagccatttccttatgcaccgtgcataattgctttctacacctaaaaccattttgtcatacacccctcaaaccaaa 346  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |||||||||    
T  28060866 gggagtggttatggtgcataagccatttccttatgcaccgtgcataattgcttcctacacccaaaaccattttgtcatacaccccccaaaccaaa 28060772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 251 - 346
Target Start/End: Original strand, 21155433 - 21155528
Alignment:
Q  251 ggggattggttatggtgcataagccatttccttatgcaccgtgcataattgctttctacacctaaaaccattttgtcatacacccctcaaaccaaa 346  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |||||||||||||||||| |||||||||    
T  21155433 ggggagtggttatggtgcataagccatttccttatgcaccgtgcataattgcttcctacaccaaaaatcattttgtcatacaccccccaaaccaaa 21155528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 257 - 336
Target Start/End: Original strand, 44340259 - 44340337
Alignment:
Q  257 tggttatggtgcataagccatttccttatgcaccgtgcataattgctttctacacctaaaaccattttgtcatacacccc 336  Q
    |||||||||||||||||  |||| ||||||||||||||||||||| || |||||||| || |||||||||||||||||||    
T  44340259 tggttatggtgcataagg-atttacttatgcaccgtgcataattgtttcctacacctcaacccattttgtcatacacccc 44340337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 259 - 298
Target Start/End: Original strand, 2263580 - 2263619
Alignment:
Q  259 gttatggtgcataagccatttccttatgcaccgtgcataa 298  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  2263580 gttatggtgcataagccatttctttatgcaccgtgcataa 2263619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 259 - 298
Target Start/End: Complemental strand, 7487313 - 7487274
Alignment:
Q  259 gttatggtgcataagccatttccttatgcaccgtgcataa 298  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  7487313 gttatggtgcataagctatttccttatgcaccgtgcataa 7487274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 259 - 298
Target Start/End: Original strand, 8149838 - 8149877
Alignment:
Q  259 gttatggtgcataagccatttccttatgcaccgtgcataa 298  Q
    |||||||||||||||||||||||||||||| |||||||||    
T  8149838 gttatggtgcataagccatttccttatgcatcgtgcataa 8149877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 259 - 298
Target Start/End: Original strand, 8154462 - 8154501
Alignment:
Q  259 gttatggtgcataagccatttccttatgcaccgtgcataa 298  Q
    |||||||||||||||||||||||||||||| |||||||||    
T  8154462 gttatggtgcataagccatttccttatgcatcgtgcataa 8154501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 259 - 298
Target Start/End: Original strand, 9143592 - 9143631
Alignment:
Q  259 gttatggtgcataagccatttccttatgcaccgtgcataa 298  Q
    |||||||||||||||  |||||||||||||||||||||||    
T  9143592 gttatggtgcataagttatttccttatgcaccgtgcataa 9143631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 259 - 298
Target Start/End: Complemental strand, 15016625 - 15016586
Alignment:
Q  259 gttatggtgcataagccatttccttatgcaccgtgcataa 298  Q
    |||||||||||||||  |||||||||||||||||||||||    
T  15016625 gttatggtgcataagttatttccttatgcaccgtgcataa 15016586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 259 - 298
Target Start/End: Original strand, 18762874 - 18762913
Alignment:
Q  259 gttatggtgcataagccatttccttatgcaccgtgcataa 298  Q
    |||||||||||||||  |||||||||||||||||||||||    
T  18762874 gttatggtgcataagttatttccttatgcaccgtgcataa 18762913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 259 - 298
Target Start/End: Original strand, 34464718 - 34464757
Alignment:
Q  259 gttatggtgcataagccatttccttatgcaccgtgcataa 298  Q
    |||||||||||||||  |||||||||||||||||||||||    
T  34464718 gttatggtgcataagttatttccttatgcaccgtgcataa 34464757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 259 - 298
Target Start/End: Original strand, 39355042 - 39355081
Alignment:
Q  259 gttatggtgcataagccatttccttatgcaccgtgcataa 298  Q
    |||||||||||||||  |||||||||||||||||||||||    
T  39355042 gttatggtgcataagttatttccttatgcaccgtgcataa 39355081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 259 - 292
Target Start/End: Complemental strand, 41346099 - 41346066
Alignment:
Q  259 gttatggtgcataagccatttccttatgcaccgt 292  Q
    ||||||||||||||||||||| ||||||||||||    
T  41346099 gttatggtgcataagccattttcttatgcaccgt 41346066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 74; Significance: 8e-34; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 257 - 346
Target Start/End: Complemental strand, 37228405 - 37228316
Alignment:
Q  257 tggttatggtgcataagccatttccttatgcaccgtgcataattgctttctacacctaaaaccattttgtcatacacccctcaaaccaaa 346  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||| |||||||||    
T  37228405 tggttatggtgcataagccatttccttatgcaccgtgcataatttcttcctacacccaaaaccattttgtcatacaccccccaaaccaaa 37228316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 252 - 332
Target Start/End: Complemental strand, 41033992 - 41033912
Alignment:
Q  252 gggattggttatggtgcataagccatttccttatgcaccgtgcataattgctttctacacctaaaaccattttgtcataca 332  Q
    |||| ||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||    
T  41033992 gggagtggttatggtgcataagtcatttccttatgcaccgtgcataattgcttcctacacccaaaaccattttgtcataca 41033912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 257 - 323
Target Start/End: Complemental strand, 19861757 - 19861692
Alignment:
Q  257 tggttatggtgcataagccatttccttatgcaccgtgcataattgctttctacacctaaaaccattt 323  Q
    |||||||||||||||||  ||||||||||||||||||||||||||||| |||||||| || ||||||    
T  19861757 tggttatggtgcataagg-atttccttatgcaccgtgcataattgcttcctacacctcaacccattt 19861692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 259 - 298
Target Start/End: Original strand, 6314122 - 6314161
Alignment:
Q  259 gttatggtgcataagccatttccttatgcaccgtgcataa 298  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  6314122 gttatggtgcataagccatttccttatgcaccgtgcataa 6314161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 259 - 298
Target Start/End: Complemental strand, 20434781 - 20434742
Alignment:
Q  259 gttatggtgcataagccatttccttatgcaccgtgcataa 298  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  20434781 gttatggtgcataagccatttccttatgcaccgtgcataa 20434742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 259 - 298
Target Start/End: Complemental strand, 4097967 - 4097928
Alignment:
Q  259 gttatggtgcataagccatttccttatgcaccgtgcataa 298  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  4097967 gttatggtgcataagctatttccttatgcaccgtgcataa 4097928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 259 - 298
Target Start/End: Complemental strand, 21256831 - 21256792
Alignment:
Q  259 gttatggtgcataagccatttccttatgcaccgtgcataa 298  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  21256831 gttatggtgcataagccattttcttatgcaccgtgcataa 21256792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 259 - 298
Target Start/End: Complemental strand, 23175581 - 23175542
Alignment:
Q  259 gttatggtgcataagccatttccttatgcaccgtgcataa 298  Q
    ||||||||||||||||||||||||||||| ||||||||||    
T  23175581 gttatggtgcataagccatttccttatgcgccgtgcataa 23175542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 259 - 298
Target Start/End: Complemental strand, 25889087 - 25889048
Alignment:
Q  259 gttatggtgcataagccatttccttatgcaccgtgcataa 298  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  25889087 gttatggtgcataagctatttccttatgcaccgtgcataa 25889048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 259 - 298
Target Start/End: Complemental strand, 49936996 - 49936957
Alignment:
Q  259 gttatggtgcataagccatttccttatgcaccgtgcataa 298  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  49936996 gttatggtgcataagtcatttccttatgcaccgtgcataa 49936957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 259 - 298
Target Start/End: Original strand, 50351810 - 50351849
Alignment:
Q  259 gttatggtgcataagccatttccttatgcaccgtgcataa 298  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  50351810 gttatggtgcataagtcatttccttatgcaccgtgcataa 50351849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 260 - 298
Target Start/End: Original strand, 34369668 - 34369706
Alignment:
Q  260 ttatggtgcataagccatttccttatgcaccgtgcataa 298  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  34369668 ttatggtgcataagccattttcttatgcaccgtgcataa 34369706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 259 - 298
Target Start/End: Original strand, 11421601 - 11421640
Alignment:
Q  259 gttatggtgcataagccatttccttatgcaccgtgcataa 298  Q
    ||||||||||||||  ||||||||||||||||||||||||    
T  11421601 gttatggtgcataaatcatttccttatgcaccgtgcataa 11421640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 259 - 298
Target Start/End: Complemental strand, 19897819 - 19897780
Alignment:
Q  259 gttatggtgcataagccatttccttatgcaccgtgcataa 298  Q
    |||||||||||||||  |||||||||||||||||||||||    
T  19897819 gttatggtgcataagttatttccttatgcaccgtgcataa 19897780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 259 - 298
Target Start/End: Complemental strand, 20507340 - 20507301
Alignment:
Q  259 gttatggtgcataagccatttccttatgcaccgtgcataa 298  Q
    ||||||||||||||||||||||||||||||  ||||||||    
T  20507340 gttatggtgcataagccatttccttatgcattgtgcataa 20507301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 259 - 298
Target Start/End: Original strand, 24635933 - 24635972
Alignment:
Q  259 gttatggtgcataagccatttccttatgcaccgtgcataa 298  Q
    |||||||||||||||  |||||||||||||||||||||||    
T  24635933 gttatggtgcataagttatttccttatgcaccgtgcataa 24635972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 259 - 298
Target Start/End: Original strand, 43452549 - 43452588
Alignment:
Q  259 gttatggtgcataagccatttccttatgcaccgtgcataa 298  Q
    |||||||||||||||  |||||||||||||||||||||||    
T  43452549 gttatggtgcataagttatttccttatgcaccgtgcataa 43452588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 259 - 298
Target Start/End: Complemental strand, 48762390 - 48762351
Alignment:
Q  259 gttatggtgcataagccatttccttatgcaccgtgcataa 298  Q
    |||||||||||||||  |||||||||||||||||||||||    
T  48762390 gttatggtgcataagttatttccttatgcaccgtgcataa 48762351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 266 - 298
Target Start/End: Complemental strand, 31529717 - 31529685
Alignment:
Q  266 tgcataagccatttccttatgcaccgtgcataa 298  Q
    ||||||||||||||||||||||||| |||||||    
T  31529717 tgcataagccatttccttatgcaccatgcataa 31529685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0455 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: scaffold0455
Description:

Target: scaffold0455; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 257 - 336
Target Start/End: Complemental strand, 10729 - 10651
Alignment:
Q  257 tggttatggtgcataagccatttccttatgcaccgtgcataattgctttctacacctaaaaccattttgtcatacacccc 336  Q
    |||||||||||||||||  ||||||||||||||||||||||||||||| |||||||| || |||||||||||||||||||    
T  10729 tggttatggtgcataagg-atttccttatgcaccgtgcataattgcttcctacacctcaacccattttgtcatacacccc 10651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 5e-23; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 257 - 336
Target Start/End: Complemental strand, 28132823 - 28132745
Alignment:
Q  257 tggttatggtgcataagccatttccttatgcaccgtgcataattgctttctacacctaaaaccattttgtcatacacccc 336  Q
    |||||||||||||||||  ||||||||||||||||||||||||||||| |||||||| || |||||||||||||||||||    
T  28132823 tggttatggtgcataagg-atttccttatgcaccgtgcataattgcttcctacacctcaacccattttgtcatacacccc 28132745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 257 - 336
Target Start/End: Original strand, 22030108 - 22030186
Alignment:
Q  257 tggttatggtgcataagccatttccttatgcaccgtgcataattgctttctacacctaaaaccattttgtcatacacccc 336  Q
    |||||||||||||||||  |||| ||||||||||||||||||||| || |||||||| || |||||||||||||||||||    
T  22030108 tggttatggtgcataagg-atttacttatgcaccgtgcataattgtttcctacacctcaacccattttgtcatacacccc 22030186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 259 - 298
Target Start/End: Original strand, 1449549 - 1449588
Alignment:
Q  259 gttatggtgcataagccatttccttatgcaccgtgcataa 298  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  1449549 gttatggtgcataagccatttccttatgcaccgtgcataa 1449588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 259 - 298
Target Start/End: Original strand, 15493181 - 15493220
Alignment:
Q  259 gttatggtgcataagccatttccttatgcaccgtgcataa 298  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  15493181 gttatggtgcataagccatttccttatgtaccgtgcataa 15493220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 259 - 298
Target Start/End: Original strand, 30908659 - 30908698
Alignment:
Q  259 gttatggtgcataagccatttccttatgcaccgtgcataa 298  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  30908659 gttatggtgcataagtcatttccttatgcaccgtgcataa 30908698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 259 - 298
Target Start/End: Original strand, 31216669 - 31216708
Alignment:
Q  259 gttatggtgcataagccatttccttatgcaccgtgcataa 298  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  31216669 gttatggtgcataagtcatttccttatgcaccgtgcataa 31216708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 251 - 336
Target Start/End: Original strand, 18755657 - 18755741
Alignment:
Q  251 ggggattggttatggtgcataagccatttccttatgcaccgtgcataattgctttctacacctaaaaccattttgtcatacacccc 336  Q
    ||||| |||||||||||||||||  | | |||||||||| ||||||||||||||  ||||||  || ||||| |||||||||||||    
T  18755657 ggggagtggttatggtgcataaggaaat-ccttatgcacggtgcataattgcttcgtacaccccaacccattatgtcatacacccc 18755741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 259 - 298
Target Start/End: Complemental strand, 1536955 - 1536916
Alignment:
Q  259 gttatggtgcataagccatttccttatgcaccgtgcataa 298  Q
    |||||||||||||||  |||||||||||||||||||||||    
T  1536955 gttatggtgcataagttatttccttatgcaccgtgcataa 1536916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 259 - 298
Target Start/End: Original strand, 6900810 - 6900849
Alignment:
Q  259 gttatggtgcataagccatttccttatgcaccgtgcataa 298  Q
    |||||||||||||||  |||||||||||||||||||||||    
T  6900810 gttatggtgcataagttatttccttatgcaccgtgcataa 6900849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 259 - 298
Target Start/End: Original strand, 7089089 - 7089128
Alignment:
Q  259 gttatggtgcataagccatttccttatgcaccgtgcataa 298  Q
    |||||||||||||||  |||||||||||||||||||||||    
T  7089089 gttatggtgcataagttatttccttatgcaccgtgcataa 7089128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 259 - 290
Target Start/End: Complemental strand, 34870145 - 34870114
Alignment:
Q  259 gttatggtgcataagccatttccttatgcacc 290  Q
    ||||||||||||||||||||||||||||||||    
T  34870145 gttatggtgcataagccatttccttatgcacc 34870114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 5e-23; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 252 - 346
Target Start/End: Original strand, 25189817 - 25189911
Alignment:
Q  252 gggattggttatggtgcataagccatttccttatgcaccgtgcataattgctttctacacctaaaacca-ttttgtcatacacccctcaaaccaaa 346  Q
    |||| |||||||||||||||||  ||||||||||||||||||||||||||||| |||||||  |||||| |||||||||||||||| |||||||||    
T  25189817 gggagtggttatggtgcataagg-atttccttatgcaccgtgcataattgcttcctacaccccaaaccatttttgtcatacaccccccaaaccaaa 25189911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 257 - 336
Target Start/End: Original strand, 16223431 - 16223509
Alignment:
Q  257 tggttatggtgcataagccatttccttatgcaccgtgcataattgctttctacacctaaaaccattttgtcatacacccc 336  Q
    ||||||| |||||||||  |||||||||||||| |||||||||||||| |||||| | ||  ||||||||||||||||||    
T  16223431 tggttatagtgcataagg-atttccttatgcacagtgcataattgcttcctacacttcaactcattttgtcatacacccc 16223509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 259 - 298
Target Start/End: Complemental strand, 3884094 - 3884055
Alignment:
Q  259 gttatggtgcataagccatttccttatgcaccgtgcataa 298  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  3884094 gttatggtgcataagtcatttccttatgcaccgtgcataa 3884055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 259 - 298
Target Start/End: Complemental strand, 26637896 - 26637857
Alignment:
Q  259 gttatggtgcataagccatttccttatgcaccgtgcataa 298  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  26637896 gttatggtgcataagccattttcttatgcaccgtgcataa 26637857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 259 - 298
Target Start/End: Original strand, 30783442 - 30783481
Alignment:
Q  259 gttatggtgcataagccatttccttatgcaccgtgcataa 298  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  30783442 gttatggtgcataagtcatttccttatgcaccgtgcataa 30783481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 259 - 298
Target Start/End: Original strand, 13552990 - 13553029
Alignment:
Q  259 gttatggtgcataagccatttccttatgcaccgtgcataa 298  Q
    |||||||||||||||  |||||||||||||||||||||||    
T  13552990 gttatggtgcataagttatttccttatgcaccgtgcataa 13553029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 259 - 298
Target Start/End: Original strand, 14394475 - 14394514
Alignment:
Q  259 gttatggtgcataagccatttccttatgcaccgtgcataa 298  Q
    |||||||||||||||  |||||||||||||||||||||||    
T  14394475 gttatggtgcataagttatttccttatgcaccgtgcataa 14394514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 259 - 298
Target Start/End: Complemental strand, 14940415 - 14940376
Alignment:
Q  259 gttatggtgcataagccatttccttatgcaccgtgcataa 298  Q
    |||||||||||||||  |||||||||||||||||||||||    
T  14940415 gttatggtgcataagttatttccttatgcaccgtgcataa 14940376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 259 - 298
Target Start/End: Original strand, 15416671 - 15416710
Alignment:
Q  259 gttatggtgcataagccatttccttatgcaccgtgcataa 298  Q
    |||||||||||||||  |||||||||||||||||||||||    
T  15416671 gttatggtgcataagttatttccttatgcaccgtgcataa 15416710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 259 - 298
Target Start/End: Original strand, 37456687 - 37456726
Alignment:
Q  259 gttatggtgcataagccatttccttatgcaccgtgcataa 298  Q
    |||||||||||| ||||||||||||||||||||| |||||    
T  37456687 gttatggtgcatgagccatttccttatgcaccgtacataa 37456726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 252 - 342
Target Start/End: Complemental strand, 37528 - 37439
Alignment:
Q  252 gggattggttatggtgcataagccatttccttatgcaccgtgcataattgctttctacacctaaaaccattttgtcatacacccctcaaac 342  Q
    ||||||||||||||||||||||  |||||||||||||||||||||||||||||  |||| || || ||||||||||||||||||| |||||    
T  37528 gggattggttatggtgcataagg-atttccttatgcaccgtgcataattgcttcatacaactcaacccattttgtcatacaccccccaaac 37439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0221 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0221
Description:

Target: scaffold0221; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 252 - 336
Target Start/End: Original strand, 20479 - 20562
Alignment:
Q  252 gggattggttatggtgcataagccatttccttatgcaccgtgcataattgctttctacacctaaaaccattttgtcatacacccc 336  Q
    |||| |||||||||||||||||  ||||||||||||||||||||||||||||| |||||||  || |||||||||||||||||||    
T  20479 gggagtggttatggtgcataagg-atttccttatgcaccgtgcataattgcttcctacaccccaacccattttgtcatacacccc 20562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 257 - 346
Target Start/End: Original strand, 20977 - 21066
Alignment:
Q  257 tggttatggtgcataagccatttccttatgcaccgtgcataattgctttctacacctaaaaccattttgtcatacac-ccctcaaaccaaa 346  Q
    |||||||||||||||||  | | ||||||||||||||||||||||||| |||||||  ||||||||||||||||||| ||| |||||||||    
T  20977 tggttatggtgcataagaaaat-ccttatgcaccgtgcataattgcttcctacaccccaaaccattttgtcatacactcccccaaaccaaa 21066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 250 - 342
Target Start/End: Complemental strand, 25779755 - 25779664
Alignment:
Q  250 aggggattggttatggtgcataagccatttccttatgcaccgtgcataattgctttctacacctaaaaccattttgtcatacacccctcaaac 342  Q
    |||||| ||||  |||||||||||  |||||||||||||||||||||||||| ||  ||||||| || ||||||||||||||||||| |||||    
T  25779755 aggggagtggtattggtgcataagg-atttccttatgcaccgtgcataattgattcatacacctcaacccattttgtcatacaccccacaaac 25779664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 259 - 298
Target Start/End: Original strand, 763704 - 763743
Alignment:
Q  259 gttatggtgcataagccatttccttatgcaccgtgcataa 298  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  763704 gttatggtgcataagccatttccttatgcaccgtgcataa 763743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 259 - 298
Target Start/End: Complemental strand, 16933303 - 16933264
Alignment:
Q  259 gttatggtgcataagccatttccttatgcaccgtgcataa 298  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  16933303 gttatggtgcataagtcatttccttatgcaccgtgcataa 16933264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 259 - 298
Target Start/End: Complemental strand, 16938686 - 16938647
Alignment:
Q  259 gttatggtgcataagccatttccttatgcaccgtgcataa 298  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  16938686 gttatggtgcataagtcatttccttatgcaccgtgcataa 16938647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 259 - 296
Target Start/End: Original strand, 24359878 - 24359915
Alignment:
Q  259 gttatggtgcataagccatttccttatgcaccgtgcat 296  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  24359878 gttatggtgcataagtcatttccttatgcaccgtgcat 24359915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 259 - 298
Target Start/End: Complemental strand, 11732706 - 11732667
Alignment:
Q  259 gttatggtgcataagccatttccttatgcaccgtgcataa 298  Q
    ||||||||||||||||||||| ||||||||| ||||||||    
T  11732706 gttatggtgcataagccattttcttatgcactgtgcataa 11732667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 259 - 298
Target Start/End: Complemental strand, 20000733 - 20000694
Alignment:
Q  259 gttatggtgcataagccatttccttatgcaccgtgcataa 298  Q
    ||||||||||||||| ||||| ||||||||||||||||||    
T  20000733 gttatggtgcataagtcatttacttatgcaccgtgcataa 20000694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 259 - 298
Target Start/End: Complemental strand, 30884281 - 30884242
Alignment:
Q  259 gttatggtgcataagccatttccttatgcaccgtgcataa 298  Q
    |||||||||||||||  |||||||||||||||||||||||    
T  30884281 gttatggtgcataagttatttccttatgcaccgtgcataa 30884242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 259 - 298
Target Start/End: Original strand, 31660076 - 31660115
Alignment:
Q  259 gttatggtgcataagccatttccttatgcaccgtgcataa 298  Q
    |||||||||||||||  |||||||||||||||||||||||    
T  31660076 gttatggtgcataagttatttccttatgcaccgtgcataa 31660115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 259 - 298
Target Start/End: Complemental strand, 41911168 - 41911129
Alignment:
Q  259 gttatggtgcataagccatttccttatgcaccgtgcataa 298  Q
    |||||||||||||||  |||||||||||||||||||||||    
T  41911168 gttatggtgcataagttatttccttatgcaccgtgcataa 41911129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 259 - 298
Target Start/End: Original strand, 46358527 - 46358566
Alignment:
Q  259 gttatggtgcataagccatttccttatgcaccgtgcataa 298  Q
    |||||||||||||||  |||||||||||||||||||||||    
T  46358527 gttatggtgcataagttatttccttatgcaccgtgcataa 46358566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 266 - 298
Target Start/End: Original strand, 5757400 - 5757432
Alignment:
Q  266 tgcataagccatttccttatgcaccgtgcataa 298  Q
    |||||||| ||||||||||||||||||||||||    
T  5757400 tgcataagacatttccttatgcaccgtgcataa 5757432  T

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Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 266 - 298
Target Start/End: Original strand, 34875503 - 34875535
Alignment:
Q  266 tgcataagccatttccttatgcaccgtgcataa 298  Q
    ||||||||||||||||||||||||| |||||||    
T  34875503 tgcataagccatttccttatgcaccctgcataa 34875535  T

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Target: scaffold0571 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0571
Description:

Target: scaffold0571; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 259 - 298
Target Start/End: Complemental strand, 735 - 696
Alignment:
Q  259 gttatggtgcataagccatttccttatgcaccgtgcataa 298  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  735 gttatggtgcataagccatttccttatgcaccgtgcataa 696  T

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Target: scaffold0045 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 259 - 298
Target Start/End: Original strand, 33691 - 33730
Alignment:
Q  259 gttatggtgcataagccatttccttatgcaccgtgcataa 298  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  33691 gttatggtgcataagccatttccttatgcaccgtgcataa 33730  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 259 - 298
Target Start/End: Complemental strand, 51846839 - 51846800
Alignment:
Q  259 gttatggtgcataagccatttccttatgcaccgtgcataa 298  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  51846839 gttatggtgcataagccatttccttatgcaccgtgcataa 51846800  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 278 - 336
Target Start/End: Original strand, 17620772 - 17620830
Alignment:
Q  278 ttccttatgcaccgtgcataattgctttctacacctaaaaccattttgtcatacacccc 336  Q
    |||||||||||||||||||||||||||  ||||||| || ||||| |||||||||||||    
T  17620772 ttccttatgcaccgtgcataattgcttcgtacacctgaatccattctgtcatacacccc 17620830  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 252 - 336
Target Start/End: Complemental strand, 40220833 - 40220751
Alignment:
Q  252 gggattggttatggtgcataagccatttccttatgcaccgtgcataattgctttctacacctaaaaccattttgtcatacacccc 336  Q
    |||| |||||||||||||||||  |||| |||||||||||||||||| ||||| |||||||  || ||||||| |||||||||||    
T  40220833 gggagtggttatggtgcataagg-attttcttatgcaccgtgcataa-tgcttcctacaccccaatccattttttcatacacccc 40220751  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 259 - 298
Target Start/End: Original strand, 9106274 - 9106313
Alignment:
Q  259 gttatggtgcataagccatttccttatgcaccgtgcataa 298  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  9106274 gttatggtgcataagtcatttccttatgcaccgtgcataa 9106313  T

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Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 259 - 298
Target Start/End: Complemental strand, 9596039 - 9596000
Alignment:
Q  259 gttatggtgcataagccatttccttatgcaccgtgcataa 298  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  9596039 gttatggtgcataagctatttccttatgcaccgtgcataa 9596000  T

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Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 259 - 298
Target Start/End: Complemental strand, 26662597 - 26662558
Alignment:
Q  259 gttatggtgcataagccatttccttatgcaccgtgcataa 298  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  26662597 gttattgtgcataagccatttccttatgcaccgtgcataa 26662558  T

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Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 259 - 298
Target Start/End: Complemental strand, 30947970 - 30947931
Alignment:
Q  259 gttatggtgcataagccatttccttatgcaccgtgcataa 298  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  30947970 gttatggtgcataagtcatttccttatgcaccgtgcataa 30947931  T

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Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 259 - 298
Target Start/End: Complemental strand, 33414072 - 33414033
Alignment:
Q  259 gttatggtgcataagccatttccttatgcaccgtgcataa 298  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  33414072 gttatggtgcataagtcatttccttatgcaccgtgcataa 33414033  T

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Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 259 - 298
Target Start/End: Complemental strand, 34563406 - 34563367
Alignment:
Q  259 gttatggtgcataagccatttccttatgcaccgtgcataa 298  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  34563406 gttatggtgcataagccattttcttatgcaccgtgcataa 34563367  T

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Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 259 - 298
Target Start/End: Complemental strand, 3475466 - 3475427
Alignment:
Q  259 gttatggtgcataagccatttccttatgcaccgtgcataa 298  Q
    |||||||||||||||  |||||||||||||||||||||||    
T  3475466 gttatggtgcataagttatttccttatgcaccgtgcataa 3475427  T

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Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 259 - 298
Target Start/End: Complemental strand, 6097743 - 6097704
Alignment:
Q  259 gttatggtgcataagccatttccttatgcaccgtgcataa 298  Q
    |||||||||||||||  |||||||||||||||||||||||    
T  6097743 gttatggtgcataagttatttccttatgcaccgtgcataa 6097704  T

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Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 259 - 298
Target Start/End: Original strand, 19284678 - 19284717
Alignment:
Q  259 gttatggtgcataagccatttccttatgcaccgtgcataa 298  Q
    |||||||||||||||  |||||||||||||||||||||||    
T  19284678 gttatggtgcataagttatttccttatgcaccgtgcataa 19284717  T

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Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 259 - 298
Target Start/End: Complemental strand, 41192409 - 41192370
Alignment:
Q  259 gttatggtgcataagccatttccttatgcaccgtgcataa 298  Q
    ||||||||||||||| |||||||||||||||||| |||||    
T  41192409 gttatggtgcataagtcatttccttatgcaccgtacataa 41192370  T

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Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 259 - 298
Target Start/End: Complemental strand, 46237817 - 46237778
Alignment:
Q  259 gttatggtgcataagccatttccttatgcaccgtgcataa 298  Q
    |||||||||||||||  |||||||||||||||||||||||    
T  46237817 gttatggtgcataagttatttccttatgcaccgtgcataa 46237778  T

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Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 259 - 298
Target Start/End: Original strand, 47335039 - 47335078
Alignment:
Q  259 gttatggtgcataagccatttccttatgcaccgtgcataa 298  Q
    |||||||||||||||  |||||||||||||||||||||||    
T  47335039 gttatggtgcataagttatttccttatgcaccgtgcataa 47335078  T

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Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 259 - 298
Target Start/End: Original strand, 54379170 - 54379209
Alignment:
Q  259 gttatggtgcataagccatttccttatgcaccgtgcataa 298  Q
    |||||||||||||||  |||||||||||||||||||||||    
T  54379170 gttatggtgcataagttatttccttatgcaccgtgcataa 54379209  T

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Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 252 - 305
Target Start/End: Original strand, 8054963 - 8055015
Alignment:
Q  252 gggattggttatggtgcataagccatttccttatgcaccgtgcataattgcttt 305  Q
    |||| ||||||||||||||||   |||| |||||||||||||||||||||||||    
T  8054963 gggagtggttatggtgcataaag-attttcttatgcaccgtgcataattgcttt 8055015  T

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Target: scaffold1251 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold1251
Description:

Target: scaffold1251; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 251 - 336
Target Start/End: Original strand, 399 - 480
Alignment:
Q  251 ggggattggttatggtgcataagccatttccttatgcaccgtgcataattgctttctacacctaaaaccattttgtcatacacccc 336  Q
    ||||| ||||||||||||||||    ||||||||||||| |||||||||| |||  ||||||  || |||||||||||||||||||    
T  399 ggggagtggttatggtgcataa----tttccttatgcactgtgcataattacttcatacaccccaacccattttgtcatacacccc 480  T

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Target: scaffold0581 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0581
Description:

Target: scaffold0581; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 259 - 298
Target Start/End: Complemental strand, 8480 - 8441
Alignment:
Q  259 gttatggtgcataagccatttccttatgcaccgtgcataa 298  Q
    ||||||||||||||||||||||||||||||| ||||||||    
T  8480 gttatggtgcataagccatttccttatgcactgtgcataa 8441  T

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Target: scaffold0074 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 259 - 298
Target Start/End: Original strand, 24281 - 24320
Alignment:
Q  259 gttatggtgcataagccatttccttatgcaccgtgcataa 298  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  24281 gttatggtgcataagccatttccttatgtaccgtgcataa 24320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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