View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5003_low_3 (Length: 389)
Name: NF5003_low_3
Description: NF5003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5003_low_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 14 - 370
Target Start/End: Original strand, 10170031 - 10170387
Alignment:
| Q |
14 |
catcacaaaacagacccttcttctcacacacttagcagtagcctcccgcaaaaaccctagctagtgtttcttcttcctccaccaatggccgccgccgcag |
113 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
10170031 |
catcacataacagacccttcttctcacacacttagcagtagcctcccgcaaaaaccctagctagtgtttcttcttcctccaccaatggccgccgcagcag |
10170130 |
T |
|
| Q |
114 |
cagcagcacgtccccttgtcacaatccaaaccctagaatcggaaatgtccaccgattcaccgaccacccttccaatccccgatgtcatgcgtgcttcaat |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |
|
|
| T |
10170131 |
cagcagcacgtccccttgtcacaatccaaaccctagaatcggaaatgtccaccgattcaccaaacacccttccaatccccgatgtcatgcgtgcttcaat |
10170230 |
T |
|
| Q |
214 |
ccgtcctgacatcgtcaatttcgtccattccaacatttccaaaaactcccgacagccctacgctgtcagccgtaaagctggccaccaaacctcagctgaa |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10170231 |
ccgtcctgacatcgtcaatttcgtccattccaacatttccaaaaactcccgacagccctacgctgtcagccgtaaagctggccaccaaacctcagctgaa |
10170330 |
T |
|
| Q |
314 |
tcatggggtactggacgtgctgtttcacgtattcctcgtgttgctggtggtgggacc |
370 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10170331 |
tcatggggtactggacgtgctgtttcacgtattcctcgtgttgctggtggtgggacc |
10170387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 94; Significance: 9e-46; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 125 - 366
Target Start/End: Original strand, 17026839 - 17027080
Alignment:
| Q |
125 |
ccccttgtcacaatccaaaccctagaatcggaaatgtccaccgattcaccgaccacccttccaatccccgatgtcatgcgtgcttcaatccgtcctgaca |
224 |
Q |
| |
|
||||| ||||| ||||||| || || || || ||| |||||||||||| || ||||| ||||| |||||||| ||||| |||||||||||||| || | |
|
|
| T |
17026839 |
cccctcgtcaccgtccaaacactcgattccgacatggccaccgattcacaaactaccctcccaattcccgatgtaatgcgagcttcaatccgtcccgata |
17026938 |
T |
|
| Q |
225 |
tcgtcaatttcgtccattccaacatttccaaaaactcccgacagccctacgctgtcagccgtaaagctggccaccaaacctcagctgaatcatggggtac |
324 |
Q |
| |
|
|||| || || ||||| ||||||||||||||||||||||| || |||||||| || ||||||||||| || ||||||||||| || || |||||||| || |
|
|
| T |
17026939 |
tcgttaactttgtccactccaacatttccaaaaactcccggcaaccctacgccgtgagccgtaaagccggtcaccaaacctccgccgagtcatggggaac |
17027038 |
T |
|
| Q |
325 |
tggacgtgctgtttcacgtattcctcgtgttgctggtggtgg |
366 |
Q |
| |
|
||| ||||| ||||| ||||||||||||||||| || ||||| |
|
|
| T |
17027039 |
tggccgtgccgtttctcgtattcctcgtgttgccggaggtgg |
17027080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 180 - 366
Target Start/End: Complemental strand, 28814932 - 28814746
Alignment:
| Q |
180 |
cccttccaatccccgatgtcatgcgtgcttcaatccgtcctgacatcgtcaatttcgtccattccaacatttccaaaaactcccgacagccctacgctgt |
279 |
Q |
| |
|
|||| ||| |||| |||||||||||||| | |||||||| || |||||||| |||||||| |||||||| ||||||||| |||| || || ||||| || |
|
|
| T |
28814932 |
ccctcccagtccctgatgtcatgcgtgccgccatccgtcccgatatcgtcaacttcgtccactccaacatctccaaaaacgcccgtcaaccatacgccgt |
28814833 |
T |
|
| Q |
280 |
cagccgtaaagctggccaccaaacctcagctgaatcatggggtactggacgtgctgtttcacgtattcctcgtgttgctggtggtgg |
366 |
Q |
| |
|
|||||| ||||||||||| ||||||||||| || || |||||||| ||||||||||| || ||||||||||||||||| || ||||| |
|
|
| T |
28814832 |
cagccgcaaagctggccatcaaacctcagccgagtcctggggtaccggacgtgctgtatcccgtattcctcgtgttgccggaggtgg |
28814746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 17 - 67
Target Start/End: Complemental strand, 22056938 - 22056887
Alignment:
| Q |
17 |
cacaaaacagacccttcttctcacacacttagcagtagc-ctcccgcaaaaa |
67 |
Q |
| |
|
|||| |||| ||||||||||||||||||||||||||||| ||| |||||||| |
|
|
| T |
22056938 |
cacagaacaaacccttcttctcacacacttagcagtagcactctcgcaaaaa |
22056887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 162 - 218
Target Start/End: Complemental strand, 4380548 - 4380492
Alignment:
| Q |
162 |
ccaccgattcaccgaccacccttccaatccccgatgtcatgcgtgcttcaatccgtc |
218 |
Q |
| |
|
|||| |||||| | |||||||| |||||||||||||| ||||| | ||||||||||| |
|
|
| T |
4380548 |
ccacggattcatccaccaccctcccaatccccgatgtaatgcgagtttcaatccgtc |
4380492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University