View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5003_low_7 (Length: 283)
Name: NF5003_low_7
Description: NF5003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5003_low_7 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 20 - 268
Target Start/End: Complemental strand, 12550581 - 12550333
Alignment:
| Q |
20 |
caagcaacattaataattgcaccacttgattatttgttaatcatcttagacctcagaattagtcactctactttctggtatagatttttatggccaacct |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12550581 |
caagcaacattaataattgcaccacttgatcatttgttaatcatcttagacctcagaattagtcactctactttctggtatagatttttatggccaacct |
12550482 |
T |
|
| Q |
120 |
taatattcaaagatttggtaaataaagatttaaaaagaaattctgagttgcttgttttctcatcaatggtgtcacaacttttgtcattttctttttattt |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12550481 |
taatattcaaagatttggtaaataaagatttaaaaagaaattctgagttgcttgttttctcatcaatggtgtcacaacttttgtcattttctttttattt |
12550382 |
T |
|
| Q |
220 |
gcatgcatcggatacattgttattaccaaccaacctctgcatcattgat |
268 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12550381 |
gcatgcatcgaatacattgttattaccaaccaacctctgcatcattgat |
12550333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 113
Target Start/End: Complemental strand, 9462293 - 9462194
Alignment:
| Q |
20 |
caagcaacattaataattgcaccacttgattatttgttaatcatctt------agacctcagaattagtcactctactttctggtatagatttttatggc |
113 |
Q |
| |
|
||||||||||||||||||| | | |||||||||||||||||||||| ||| |||||||||| |||||||||||||||||||||| |||| |||| |
|
|
| T |
9462293 |
caagcaacattaataattgttcaagttgattatttgttaatcatcttagtttgagatctcagaattattcactctactttctggtatagacttttctggc |
9462194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University