View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5003_low_8 (Length: 210)
Name: NF5003_low_8
Description: NF5003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5003_low_8 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 68; Significance: 1e-30; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 112 - 187
Target Start/End: Original strand, 48541616 - 48541691
Alignment:
| Q |
112 |
aaaaagttaagtaaattataaatttccctaaccaccattgacgaagatccaatttagtctctaataaatttctccc |
187 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
48541616 |
aaaaagttaagtaaagtataaatttccctaaccaccattcacgaagatccaatttagtctctaataaatttctccc |
48541691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 48541577 - 48541614
Alignment:
| Q |
1 |
atggggatagagaaggtaaaactcatccccacccctcg |
38 |
Q |
| |
|
||||||| |||||||||||||||| ||||||||||||| |
|
|
| T |
48541577 |
atggggacagagaaggtaaaactcgtccccacccctcg |
48541614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University