View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5004-Insertion-2 (Length: 466)
Name: NF5004-Insertion-2
Description: NF5004
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5004-Insertion-2 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 110 - 466
Target Start/End: Original strand, 46556986 - 46557341
Alignment:
| Q |
110 |
gattggttctgtatcaggccataactcagctcgtttaccggtttgtgttagtatcttaatcagtgtatcggtgtcgacagtcccctttacttctactttt |
209 |
Q |
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| T |
46556986 |
gattggttctgtatcaggccataactcagctcgtttaccggtttgtgttagtatcttaatcagtgtatcggtgtcgacagtcccctttacttctactttt |
46557085 |
T |
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| Q |
210 |
tgttgcttcaaatcaatagttgtttgataaacacctgatttaacaacaatattaacaagagttttgaaatgaaaacaaaaaataacatatattgagtttt |
309 |
Q |
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| T |
46557086 |
tgttgcttcaaatcaatagttgtttgataaacacctgatttaacaacaatattaacaagagttttgaaatgaaaacaaaaaataacatatattgagtttt |
46557185 |
T |
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| Q |
310 |
gaatgttattga-tttgttaccatctatgctttggaggacttttttgacttttctcatgcaaccttgacaatgaatggagactcttaacgtacagctctg |
408 |
Q |
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| T |
46557186 |
gaatgttattgattttgttaccatctatgctttggaggacttttttgacttttctcatgcaaccttgacaatgaatggagactcttaacgtacagctctg |
46557285 |
T |
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| Q |
409 |
aaagaacaagaacaagaacagagacgtatgttagaagtagtaaaagagagttattaaa |
466 |
Q |
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| T |
46557286 |
aaagaacaagaac--gaacagagacgtatgttagaagtagtaaaagagagttattaaa |
46557341 |
T |
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