View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5004-Insertion-3 (Length: 376)

Name: NF5004-Insertion-3
Description: NF5004
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5004-Insertion-3
NF5004-Insertion-3
[»] chr5 (1 HSPs)
chr5 (8-376)||(32203420-32203788)
[»] chr2 (3 HSPs)
chr2 (8-375)||(40453859-40454226)
chr2 (114-323)||(40092161-40092370)
chr2 (8-56)||(40092428-40092476)
[»] chr8 (3 HSPs)
chr8 (8-376)||(39745197-39745565)
chr8 (114-323)||(12462518-12462727)
chr8 (8-56)||(12462785-12462833)
[»] chr1 (4 HSPs)
chr1 (8-376)||(27514137-27514505)
chr1 (8-371)||(9717572-9717935)
chr1 (114-278)||(8189791-8189955)
chr1 (8-56)||(8189685-8189733)
[»] chr4 (3 HSPs)
chr4 (8-376)||(56389894-56390262)
chr4 (199-284)||(3275773-3275858)
chr4 (199-284)||(28600894-28600979)
[»] chr7 (2 HSPs)
chr7 (114-323)||(4245721-4245930)
chr7 (8-56)||(4245988-4246036)
[»] chr3 (1 HSPs)
chr3 (8-56)||(8018414-8018462)


Alignment Details
Target: chr5 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 8 - 376
Target Start/End: Complemental strand, 32203788 - 32203420
Alignment:
8 catgttggacaggattatgtgcaatctctatggcagatgtattatcacaatacaaactcatagcttcttttggctcaaaacccaagtctgacaacacact 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
32203788 catgttggacaggattatgtgcaatctctatggcagatgtattatcacaatacaaactcatagcttcttttggctcaaaacccaagtctgacaacacact 32203689  T
108 ttttacccataacagttcacacattccaagtgccatacctctaaactctgcttcagcacttgatctagctactactggctgcttcttactcctccaagtt 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
32203688 ttttacccataacagttcacacattccaagtgccatacctctaaactctacttcagcacttgatctagctactactggctgcttcttactcctccaagtt 32203589  T
208 acaaggtttcctcctacaaaagtgaaatatcctgaggtagatcttctatcatctgctgaacctgcccaatcggcatctgtgtatccttctaccctcaagt 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
32203588 acaaggtttcctcctacaaaagtgaaatatcctgaggtagatcttctatcatctgctgaacctgcccaatcggcatctgtgtatccttctaccctcaagt 32203489  T
308 gaccattgtttgagaacaatattcctttacctggagtggatttcaaatatcttaatatcctctctacaa 376  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
32203488 gaccattgtttgagaacaatattcctttacctggagtggatttcaaatatcttaatatcctctctacaa 32203420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 364; Significance: 0; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 8 - 375
Target Start/End: Original strand, 40453859 - 40454226
Alignment:
8 catgttggacaggattatgtgcaatctctatggcagatgtattatcacaatacaaactcatagcttcttttggctcaaaacccaagtctgacaacacact 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
40453859 catgttggacaggattatgtgcaatctctatggcagatgtattatcacaatacaaactcatagcttcttttggctcaaaacccaagtctgacaacacact 40453958  T
108 ttttacccataacagttcacacattccaagtgccatacctctaaactctgcttcagcacttgatctagctactactggctgcttcttactcctccaagtt 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
40453959 ttttacccataacagttcacacattccaagtgccatacctctaaactcttcttcagcacttgatctagctactactggctgcttcttactcctccaagtt 40454058  T
208 acaaggtttcctcctacaaaagtgaaatatcctgaggtagatcttctatcatctgctgaacctgcccaatcggcatctgtgtatccttctaccctcaagt 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
40454059 acaaggtttcctcctacaaaagtgaaatatcctgaggtagatcttctatcatctgctgaacctgcccaatcggcatctgtgtatccttctaccctcaagt 40454158  T
308 gaccattgtttgagaacaatattcctttacctggagtggatttcaaatatcttaatatcctctctaca 375  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
40454159 gaccattgtttgagaacaatattcctttacctggagtggatttcaaatatcttaatatcctctctaca 40454226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 114 - 323
Target Start/End: Complemental strand, 40092370 - 40092161
Alignment:
114 ccataacagttcacacattccaagtgccatacctctaaactctgcttcagcacttgatctagctactactggctgcttcttactcctccaagttacaagg 213  Q
    ||||| ||||||||| ||||| | |||||| || || || |||||||| |||||||||||||| |||||| | || || ||||||||||||||||| |      
40092370 ccatagcagttcacatattcctactgccatccccctgaattctgcttcggcacttgatctagcaactacttgttgttttttactcctccaagttactaaa 40092271  T
214 tttcctcctacaaaagtgaaatatcctgaggtagatcttctatcatctgctgaacctgcccaatcggcatctgtgtatccttctaccctcaagtgaccat 313  Q
    |||||||| |||||||| || || ||||  |||||  |||| ||||| || || || |||||||| ||||| || || ||||| ||  | | ||||||||    
40092270 tttcctcccacaaaagttaagtagcctgcagtagactttctgtcatccgcagatccggcccaatcagcatcggtataaccttcgactttgaggtgaccat 40092171  T
314 tgtttgagaa 323  Q
     |||||||||    
40092170 ggtttgagaa 40092161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 56
Target Start/End: Complemental strand, 40092476 - 40092428
Alignment:
8 catgttggacaggattatgtgcaatctctatggcagatgtattatcaca 56  Q
    ||||||||||||| ||||| |||||||||||||||||| |||| |||||    
40092476 catgttggacagggttatgagcaatctctatggcagatttattgtcaca 40092428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 125; Significance: 3e-64; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 8 - 376
Target Start/End: Complemental strand, 39745565 - 39745197
Alignment:
8 catgttggacaggattatgtgcaatctctatggcagatgtattatcacaatacaaactcatagcttcttttggctcaaaacccaagtctgacaacacact 107  Q
    ||||||||||||||||||| |||||  |||| || |||||||||||||| ||||| ||||||||||| ||||| | ||||||||  |||||||| ||| |    
39745565 catgttggacaggattatgagcaattgctattgctgatgtattatcacagtacaacctcatagcttcctttggtttaaaacccatatctgacaaaacatt 39745466  T
108 ttttacccataacagttcacacattccaagtgccatacctctaaactctgcttcagcacttgatctagctactactggctgcttcttactcctccaagtt 207  Q
    |  |||||| || |||||||| |  ||||||||||| ||||||||||||||||||||||| ||||| ||||| || || || || ||||||||||| |||    
39745465 tcgtacccacaaaagttcacataccccaagtgccatgcctctaaactctgcttcagcactagatcttgctaccaccggttgttttttactcctccaggtt 39745366  T
208 acaaggtttcctcctacaaaagtgaaatatcctgaggtagatcttctatcatctgctgaacctgcccaatcggcatctgtgtatccttctaccctcaagt 307  Q
    ||||| |||||||||||||| || || || || |||||||| |||||||||| |  ||| ||||||||||| ||||| ||||| ||||| |||   ||||    
39745365 acaagatttcctcctacaaacgtaaagtaaccagaggtagaccttctatcattttttgaccctgcccaatcagcatcggtgtacccttcaacctctaagt 39745266  T
308 gaccattgtttgagaacaatattcctttacctggagtggatttcaaatatcttaatatcctctctacaa 376  Q
      ||||  |||||||| || |||||||| || ||||| || ||||||||||| || |||||||| ||||    
39745265 ttccatgatttgagaataaaattccttttccaggagtagacttcaaatatctcaaaatcctctcaacaa 39745197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 114 - 323
Target Start/End: Complemental strand, 12462727 - 12462518
Alignment:
114 ccataacagttcacacattccaagtgccatacctctaaactctgcttcagcacttgatctagctactactggctgcttcttactcctccaagttacaagg 213  Q
    ||||| ||||||||| ||||| | |||||| || || || |||||||| |||||||||||||| |||||| | || || ||||||||||||||||| |      
12462727 ccatagcagttcacatattcctactgccatccccctgaattctgcttcggcacttgatctagcaactacttgttgttttttactcctccaagttactaaa 12462628  T
214 tttcctcctacaaaagtgaaatatcctgaggtagatcttctatcatctgctgaacctgcccaatcggcatctgtgtatccttctaccctcaagtgaccat 313  Q
    |||||||| |||||||| || || ||||  |||||  |||| ||||| || || || |||||||| ||||| || || ||||| ||  | | ||||||||    
12462627 tttcctcccacaaaagttaagtagcctgcagtagactttctgtcatccgcagatccggcccaatcagcatcggtataaccttcgactttgaggtgaccat 12462528  T
314 tgtttgagaa 323  Q
     |||||||||    
12462527 ggtttgagaa 12462518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 56
Target Start/End: Complemental strand, 12462833 - 12462785
Alignment:
8 catgttggacaggattatgtgcaatctctatggcagatgtattatcaca 56  Q
    ||||||||||||| ||||| |||||||||||||||||| |||| |||||    
12462833 catgttggacagggttatgagcaatctctatggcagatttattgtcaca 12462785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 125; Significance: 3e-64; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 8 - 376
Target Start/End: Original strand, 27514137 - 27514505
Alignment:
8 catgttggacaggattatgtgcaatctctatggcagatgtattatcacaatacaaactcatagcttcttttggctcaaaacccaagtctgacaacacact 107  Q
    ||||||||||| ||||||| |||||  |||| || |||||||||||||||||||| ||||||||||| ||||| | ||||||||  |||||||| ||| |    
27514137 catgttggacaagattatgagcaattgctattgctgatgtattatcacaatacaacctcatagcttcctttggtttaaaacccatatctgacaaaacatt 27514236  T
108 ttttacccataacagttcacacattccaagtgccatacctctaaactctgcttcagcacttgatctagctactactggctgcttcttactcctccaagtt 207  Q
    |  |||||| || |||||||| |  ||||||||||| ||||||||||||||||||||||| ||||| ||||| || || || || ||||||||||| |||    
27514237 tcgtacccacaaaagttcacataccccaagtgccatgcctctaaactctgcttcagcactagatcttgctaccaccggttgttttttactcctccaggtt 27514336  T
208 acaaggtttcctcctacaaaagtgaaatatcctgaggtagatcttctatcatctgctgaacctgcccaatcggcatctgtgtatccttctaccctcaagt 307  Q
    ||||| |||||||||||||| || || || || |||||||| |||||||||| |  ||| ||||||||||| ||||| ||||| ||||| |||   ||||    
27514337 acaagatttcctcctacaaacgtaaagtaaccagaggtagaccttctatcattttttgaccctgcccaatcagcatcggtgtacccttcaacctctaagt 27514436  T
308 gaccattgtttgagaacaatattcctttacctggagtggatttcaaatatcttaatatcctctctacaa 376  Q
      ||||  |||||||| || |||||||| || ||||| || ||||||||||| || |||||||| ||||    
27514437 ttccatgatttgagaataaaattccttttccaggagtagacttcaaatatctcaaaatcctctcaacaa 27514505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 8 - 371
Target Start/End: Original strand, 9717572 - 9717935
Alignment:
8 catgttggacaggattatgtgcaatctctatggcagatgtattatcacaatacaaactcatagcttcttttggctcaaaacccaagtctgacaacacact 107  Q
    ||||||||||||||||||| |||||  |||| || |||||||||||||| ||||| ||||||||||| ||||| | ||||||||  |||||||| ||| |    
9717572 catgttggacaggattatgagcaattgctattgctgatgtattatcacagtacaacctcatagcttcctttggtttaaaacccatatctgacaaaacatt 9717671  T
108 ttttacccataacagttcacacattccaagtgccatacctctaaactctgcttcagcacttgatctagctactactggctgcttcttactcctccaagtt 207  Q
    |  |||||| || |||||||| |  ||||||||||| ||||||||||||||||||||||| ||||| ||||| || || || || ||||||||||| |||    
9717672 tcgtacccacaaaagttcacataccccaagtgccatgcctctaaactctgcttcagcactagatcttgctaccaccggttgttttttactcctccaggtt 9717771  T
208 acaaggtttcctcctacaaaagtgaaatatcctgaggtagatcttctatcatctgctgaacctgcccaatcggcatctgtgtatccttctaccctcaagt 307  Q
    ||||| ||||||||||||||  | || || || |||||||| |||||||||| |  ||| ||||||||||| ||||| ||||| ||||| |||   ||||    
9717772 acaagatttcctcctacaaacataaagtaaccagaggtagaccttctatcattttttgaccctgcccaatcagcatcggtgtacccttcaacctctaagt 9717871  T
308 gaccattgtttgagaacaatattcctttacctggagtggatttcaaatatcttaatatcctctc 371  Q
      ||||  |||||||| || |||||||| |  ||||| || ||||||||||| || ||||||||    
9717872 ttccatgatttgagaataaaattccttttctaggagtagacttcaaatatctcaaaatcctctc 9717935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 114 - 278
Target Start/End: Original strand, 8189791 - 8189955
Alignment:
114 ccataacagttcacacattccaagtgccatacctctaaactctgcttcagcacttgatctagctactactggctgcttcttactcctccaagttacaagg 213  Q
    ||||| ||||||||| ||||| | |||||| || || || |||||||| |||||||||||||| |||||| | || || ||||||||||||||||| |      
8189791 ccatagcagttcacatattcctactgccatccccctgaattctgcttcggcacttgatctagcaactacttgttgttttttactcctccaagttactaaa 8189890  T
214 tttcctcctacaaaagtgaaatatcctgaggtagatcttctatcatctgctgaacctgcccaatc 278  Q
    |||||||| ||||||||||| || ||||  |||||  |||| ||||| || || || ||||||||    
8189891 tttcctcccacaaaagtgaagtagcctgcagtagactttctgtcatccgcagatccggcccaatc 8189955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 56
Target Start/End: Original strand, 8189685 - 8189733
Alignment:
8 catgttggacaggattatgtgcaatctctatggcagatgtattatcaca 56  Q
    ||||||||| ||| ||||| |||||||||||||||||| |||| |||||    
8189685 catgttggagagggttatgagcaatctctatggcagatttattgtcaca 8189733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 110; Significance: 2e-55; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 8 - 376
Target Start/End: Original strand, 56389894 - 56390262
Alignment:
8 catgttggacaggattatgtgcaatctctatggcagatgtattatcacaatacaaactcatagcttcttttggctcaaaacccaagtctgacaacacact 107  Q
    ||||||||||||||||||| |||||  |||| || |||||||||||||| ||||| ||||||||||| ||||| | ||||| ||  |||||||| ||| |    
56389894 catgttggacaggattatgagcaattgctattgctgatgtattatcacagtacaacctcatagcttcctttggtttaaaactcatatctgacaaaacatt 56389993  T
108 ttttacccataacagttcacacattccaagtgccatacctctaaactctgcttcagcacttgatctagctactactggctgcttcttactcctccaagtt 207  Q
    |  |||||| || |||||||| |  ||||||| ||| ||||||||||||||||||||||| ||||| | ||| || || || || ||||||||||| |||    
56389994 tcgtacccacaaaagttcacataccccaagtgtcatgcctctaaactctgcttcagcactagatcttgttaccaccggttgttttttactcctccaggtt 56390093  T
208 acaaggtttcctcctacaaaagtgaaatatcctgaggtagatcttctatcatctgctgaacctgcccaatcggcatctgtgtatccttctaccctc-aag 306  Q
    ||||| |||||||||||||| || || || || |||||||| |||||||||| |  ||| ||||||||||| ||||| ||||| |||| || |||| |||    
56390094 acaagatttcctcctacaaatgtaaagtaaccagaggtagaccttctatcattttttgaccctgcccaatcagcatcggtgtaccctt-taacctctaag 56390192  T
307 tgaccattgtttgagaacaatattcctttacctggagtggatttcaaatatcttaatatcctctctacaa 376  Q
    |  ||||  |||||||| || |||||||| || ||||| || ||||||||||| || |||||||| ||||    
56390193 tttccatgatttgagaataaaattccttttccaggagtagacttcaaatatctcaaaatcctctcaacaa 56390262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 199 - 284
Target Start/End: Original strand, 3275773 - 3275858
Alignment:
199 ctccaagttacaaggtttcctcctacaaaagtgaaatatcctgaggtagatcttctatcatctgctgaacctgcccaatcggcatc 284  Q
    ||||| || |||||||| ||||||||||| ||||| || ||||| ||||||||||||||||||   || || ||||||||||||||    
3275773 ctccatgtaacaaggttacctcctacaaaggtgaagtaacctgaagtagatcttctatcatctatagatccagcccaatcggcatc 3275858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 199 - 284
Target Start/End: Complemental strand, 28600979 - 28600894
Alignment:
199 ctccaagttacaaggtttcctcctacaaaagtgaaatatcctgaggtagatcttctatcatctgctgaacctgcccaatcggcatc 284  Q
    ||||| || |||||||| ||||||||||| ||||| || ||||| ||||||||||||||||||   || || ||||||||||||||    
28600979 ctccatgtaacaaggttacctcctacaaaggtgaagtaacctgaagtagatcttctatcatctatagatccagcccaatcggcatc 28600894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 114 - 323
Target Start/End: Complemental strand, 4245930 - 4245721
Alignment:
114 ccataacagttcacacattccaagtgccatacctctaaactctgcttcagcacttgatctagctactactggctgcttcttactcctccaagttacaagg 213  Q
    ||||| ||||||||| ||||| | |||||| || || || |||||||| |||||||||||||| |||||| | || || ||||||||||||||||| |      
4245930 ccatagcagttcacatattcctactgccatccccctgaattctgcttcggcacttgatctagcaactacttgttgttttttactcctccaagttactaaa 4245831  T
214 tttcctcctacaaaagtgaaatatcctgaggtagatcttctatcatctgctgaacctgcccaatcggcatctgtgtatccttctaccctcaagtgaccat 313  Q
    |||||||| |||||||| || || ||||  |||||  |||| ||||| || || || |||||||| ||||| || || ||||| ||  | | ||||||||    
4245830 tttcctcccacaaaagttaagtagcctgcagtagactttctgtcatccgcagatccggcccaatcagcatcggtataaccttcgactttgaggtgaccat 4245731  T
314 tgtttgagaa 323  Q
     |||||||||    
4245730 ggtttgagaa 4245721  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 56
Target Start/End: Complemental strand, 4246036 - 4245988
Alignment:
8 catgttggacaggattatgtgcaatctctatggcagatgtattatcaca 56  Q
    ||||||||||||| ||||| |||||||||||||||||| |||| |||||    
4246036 catgttggacagggttatgagcaatctctatggcagatttattgtcaca 4245988  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 56
Target Start/End: Complemental strand, 8018462 - 8018414
Alignment:
8 catgttggacaggattatgtgcaatctctatggcagatgtattatcaca 56  Q
    ||||||||||||| ||||| |||||||||||||||||| |||| |||||    
8018462 catgttggacagggttatgagcaatctctatggcagatttattgtcaca 8018414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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