View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5004-Insertion-4 (Length: 114)
Name: NF5004-Insertion-4
Description: NF5004
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5004-Insertion-4 |
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Alignment Details
Target: chr5 (Bit Score: 87; Significance: 3e-42; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 87; E-Value: 3e-42
Query Start/End: Original strand, 7 - 112
Target Start/End: Original strand, 37188782 - 37188888
Alignment:
| Q |
7 |
atttgaagctggaatcttataatttaagcttccaaaactcatcaaccaacaaa-tatagttccaacaccaaccaaaccaataacactacaagaacctcaa |
105 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
37188782 |
atttgaagctggaatcttatatattaagcttccaaaactcatcaaccaacaaaatatagttccaacaccaaccaaaccaataacacaacaagaacctcaa |
37188881 |
T |
|
| Q |
106 |
aagcctc |
112 |
Q |
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||||||| |
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| T |
37188882 |
aagcctc |
37188888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 79; E-Value: 2e-37
Query Start/End: Original strand, 7 - 112
Target Start/End: Original strand, 37893684 - 37893790
Alignment:
| Q |
7 |
atttgaagctggaatcttataatttaagcttccaaaactcatcaaccaacaaa-tatagttccaacaccaaccaaaccaataacactacaagaacctcaa |
105 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||||| ||||||||||||| |
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| T |
37893684 |
atttgaagctggaatcttatatattaagcttccaaaactcatcagccaacaaaatatagttccaacaccaaccaaaccaacaacacaacaagaacctcaa |
37893783 |
T |
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| Q |
106 |
aagcctc |
112 |
Q |
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||||||| |
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|
| T |
37893784 |
aagcctc |
37893790 |
T |
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