View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5004-Insertion-6 (Length: 277)
Name: NF5004-Insertion-6
Description: NF5004
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5004-Insertion-6 |
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Alignment Details
Target: chr4 (Bit Score: 139; Significance: 9e-73; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 7 - 274
Target Start/End: Complemental strand, 40063350 - 40063079
Alignment:
| Q |
7 |
acagagtactctgttctcttttcttttctcc-tcatcatcatcaannnnnnn-cccttgtacacgttagtatcacatctattttttccttgg-agagaag |
103 |
Q |
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| T |
40063350 |
acagagtactctgttttcttttctattctccatcatcatcatcaattttttttcccttatacacgtttttatcacatctattttttccttgtcagagaaa |
40063251 |
T |
|
| Q |
104 |
aaacggtttccttaatcttcagtataactctagtctacgtatctttcag-cttcacacgtcacaacccatttcataactcaacacaacaatttattattt |
202 |
Q |
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|||| |||||||||||||||| ||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40063250 |
aaacagtttccttaatcttcataataactctatactacgtatctttcaaacttcaaacgtcacaacccatttcataactcaacacaacaatttattattt |
40063151 |
T |
|
| Q |
203 |
attattacaacacagcagaaacccgcttgacttcacttctacaagagattggtagaatatggggaagtgtca |
274 |
Q |
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||||||||||||||||| |||||| ||| ||||||||||||||||| |||| |||||||||||||| ||||| |
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| T |
40063150 |
attattacaacacagcacaaacccacttcacttcacttctacaagaaattgttagaatatggggaattgtca |
40063079 |
T |
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