View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5004-Insertion-8 (Length: 255)
Name: NF5004-Insertion-8
Description: NF5004
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5004-Insertion-8 |
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Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 8 - 253
Target Start/End: Original strand, 23177706 - 23177951
Alignment:
| Q |
8 |
ttaaatcctctatcgccacactctacaccaatggtgcataattttatatttccaactatattgacagtataagcagagaaaagactagaagcatgctaag |
107 |
Q |
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| T |
23177706 |
ttaaatcctctatcgccacagtctgcacaaatggtgcataattttatatttccaactatatggacagtataagcagagaaaagactagaagcatgctaag |
23177805 |
T |
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| Q |
108 |
ttgaacagagtacggtccacggtcttactaagcaacccatcgaaattgaacagtaaaccctaaaagagaaacctgggggttagagcactataaataagag |
207 |
Q |
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| T |
23177806 |
ttgaacagagtacggtccacggtcttactaagcaatccaccgaaattgaacagtaaacccgaaaagagaaacctgggggttagagcactataaataagag |
23177905 |
T |
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| Q |
208 |
gtaggtagaaagtttaataccttttttgtaaatttaactccctgta |
253 |
Q |
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| T |
23177906 |
gtaggtagaaagtttaataccttttttggaaatttaactccatgta |
23177951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 161 - 253
Target Start/End: Original strand, 23890743 - 23890837
Alignment:
| Q |
161 |
taaaccctaaaagagaaacctggggg--ttagagcactataaataagaggtaggtagaaagtttaataccttttttgtaaatttaactccctgta |
253 |
Q |
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| T |
23890743 |
taaacccgaaaagagaaacatgggagagttagagcactataaataagaggtcggtagagagtttaataccttttttggaaatttaactccatgta |
23890837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 248
Target Start/End: Complemental strand, 7869182 - 7869120
Alignment:
| Q |
186 |
gttagagcactataaataagaggtaggtagaaagtttaataccttttttgtaaatttaactcc |
248 |
Q |
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| T |
7869182 |
gttagagcactattaataagcagcaggtagaaaatttaataccttctttggaaacttaactcc |
7869120 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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