View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5004_high_5 (Length: 215)
Name: NF5004_high_5
Description: NF5004
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5004_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 48485125 - 48485329
Alignment:
| Q |
1 |
atatcagaagtcgtttcacttgtgaaccaagccatatttgttaagaattttgtctgcagcatggagaggaaatcaaaatattttaattaggctatcaaac |
100 |
Q |
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| T |
48485125 |
atatcagaagtcgtttcacttgtgaaccaagccatatttgttaagaattttgtctgcagcatggagaggaaatcaaaatattttaattaggctatcaaac |
48485224 |
T |
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| Q |
101 |
cataaaatataaaataagtgttgaaggcttacaaatgaagctttggaaagtatattcctttcatgtcattgcacaccaccgctagattttcaggtaacac |
200 |
Q |
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| T |
48485225 |
cctaaaatataaaataagtgttgaaggattacaaatgaagctttggaaagtatattcctttcatgtcattgcacaccaccgctagattttcaggtaacac |
48485324 |
T |
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| Q |
201 |
aggtt |
205 |
Q |
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||||| |
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| T |
48485325 |
aggtt |
48485329 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 120 - 181
Target Start/End: Complemental strand, 10035615 - 10035554
Alignment:
| Q |
120 |
gttgaaggcttacaaatgaagctttggaaagtatattcctttcatgtcattgcacaccaccg |
181 |
Q |
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| T |
10035615 |
gttgatggcttacaaatgaagctttgggatgtaaattccttccattccattgcacaccaccg |
10035554 |
T |
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