View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5004_low_2 (Length: 382)

Name: NF5004_low_2
Description: NF5004
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5004_low_2
NF5004_low_2
[»] chr3 (8 HSPs)
chr3 (36-364)||(33908631-33908959)
chr3 (36-181)||(18554316-18554461)
chr3 (36-181)||(23702320-23702465)
chr3 (36-181)||(23720776-23720921)
chr3 (36-181)||(23739232-23739377)
chr3 (35-119)||(6305833-6305917)
chr3 (65-124)||(46830165-46830224)
chr3 (60-111)||(20850234-20850285)
[»] chr2 (8 HSPs)
chr2 (34-364)||(35593209-35593539)
chr2 (36-364)||(4968791-4969119)
chr2 (35-360)||(37393015-37393340)
chr2 (36-360)||(11881961-11882285)
chr2 (97-364)||(40654247-40654514)
chr2 (36-162)||(7094814-7094941)
chr2 (36-124)||(1696879-1696967)
chr2 (36-124)||(33058029-33058117)
[»] chr7 (11 HSPs)
chr7 (36-364)||(19764163-19764491)
chr7 (36-364)||(7305841-7306169)
chr7 (36-162)||(21780996-21781122)
chr7 (36-155)||(41201793-41201912)
chr7 (36-119)||(7916208-7916291)
chr7 (60-162)||(38705879-38705981)
chr7 (36-124)||(1534009-1534097)
chr7 (35-107)||(18342009-18342080)
chr7 (36-117)||(9670416-9670497)
chr7 (36-124)||(23769334-23769422)
chr7 (61-99)||(46419968-46420006)
[»] chr4 (7 HSPs)
chr4 (37-364)||(16924203-16924530)
chr4 (97-364)||(32215122-32215389)
chr4 (36-124)||(5322641-5322730)
chr4 (36-120)||(18912802-18912886)
chr4 (61-105)||(34344483-34344527)
chr4 (60-92)||(14649644-14649676)
chr4 (36-124)||(20360993-20361081)
[»] chr8 (6 HSPs)
chr8 (36-364)||(11722401-11722729)
chr8 (36-227)||(16375808-16375999)
chr8 (36-246)||(9763185-9763396)
chr8 (29-111)||(35631424-35631506)
chr8 (36-124)||(44462714-44462801)
chr8 (36-124)||(44470245-44470332)
[»] scaffold0669 (1 HSPs)
scaffold0669 (36-364)||(6601-6908)
[»] chr1 (5 HSPs)
chr1 (36-360)||(34678421-34678745)
chr1 (36-169)||(20338892-20339024)
chr1 (39-169)||(49329473-49329602)
chr1 (36-119)||(2399581-2399664)
chr1 (83-124)||(25259510-25259551)
[»] chr6 (9 HSPs)
chr6 (36-271)||(4968258-4968494)
chr6 (36-181)||(13338033-13338178)
chr6 (36-181)||(28902826-28902971)
chr6 (60-168)||(4449166-4449274)
chr6 (60-162)||(13507567-13507669)
chr6 (36-119)||(31519894-31519977)
chr6 (36-119)||(17311435-17311518)
chr6 (36-95)||(28679082-28679140)
chr6 (36-106)||(20106166-20106236)
[»] scaffold0260 (1 HSPs)
scaffold0260 (36-169)||(1215-1347)
[»] scaffold0214 (1 HSPs)
scaffold0214 (36-162)||(330-456)
[»] scaffold0573 (1 HSPs)
scaffold0573 (36-181)||(6823-6968)
[»] scaffold1414 (1 HSPs)
scaffold1414 (30-162)||(1155-1290)
[»] chr5 (3 HSPs)
chr5 (67-181)||(2063550-2063664)
chr5 (60-162)||(33891859-33891961)
chr5 (60-107)||(37574900-37574946)
[»] scaffold1371 (1 HSPs)
scaffold1371 (36-117)||(1818-1899)
[»] scaffold0005 (1 HSPs)
scaffold0005 (60-92)||(167616-167648)


Alignment Details
Target: chr3 (Bit Score: 309; Significance: 1e-174; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 36 - 364
Target Start/End: Complemental strand, 33908959 - 33908631
Alignment:
36 cactacaagaataatgaccctttaccagggattttgacaagggtttgaaacccctggcaaatttgccagggaaaataccaaggaaaaccggtggcacaaa 135  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
33908959 cactacaagaataatgaccctttgccagggattttgacaagggtttgaaacccctggcaaatttgccagggaaaataccaaggaaaaccggtggcacaaa 33908860  T
136 agacagggatttgcccctcgctttttgacaaaaatccctcggttttgataaggcgccagtttgaaatttgaaaatctgagggaatctgtgcttgtcagca 235  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
33908859 agacagggatttgcccctcgctttttgacaaaaatccctcggttttgataaggcgccagtttgaaatttgaaaatctgtgggaatctgtgcttgtcagca 33908760  T
236 aaaaccgacggaaaaagccagggaactgcccctcggtttgagaaaaccaaaggaatccctgcgttttcccagctgagttgacaagggcctgccaaaagct 335  Q
    |||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
33908759 aaaaccgacggaaaaagccagggaacagcccctcggtttgcgaaaaccaaaggaatccctgcgttttcccagctgagttgacaagggcctgccaaaagct 33908660  T
336 gagcgttgccggcctgccaggggcggaac 364  Q
    ||||| |||||||||||||||||||||||    
33908659 gagcgctgccggcctgccaggggcggaac 33908631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 36 - 181
Target Start/End: Complemental strand, 18554461 - 18554316
Alignment:
36 cactacaagaataatgaccctttaccagggattttgacaagggtttgaaacccctggcaaatttgccagggaaaataccaaggaaaaccggtggcacaaa 135  Q
    ||||||||||||| | ||| ||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| ||||| ||||| |||    
18554461 cactacaagaatagttaccttttgccagggattttgacaagggtttgaagcccctggcaaatttgccagggaaaatgccaaggacaaccgctggcaaaaa 18554362  T
136 agacagggatttgcccctcgctttttgacaaaaatccctcggtttt 181  Q
    | || ||| ||||||||||| || ||   |||||||||| ||||||    
18554361 acactggggtttgcccctcgtttattttaaaaaatccctgggtttt 18554316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 36 - 181
Target Start/End: Original strand, 23702320 - 23702465
Alignment:
36 cactacaagaataatgaccctttaccagggattttgacaagggtttgaaacccctggcaaatttgccagggaaaataccaaggaaaaccggtggcacaaa 135  Q
    ||||||||||||| | ||| ||| ||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||| ||||| ||||| |||    
23702320 cactacaagaatagttaccttttgccagggattttgacaagggtttgaagcccctggcaaattttccagggaaaatgccaaggacaaccgctggcaaaaa 23702419  T
136 agacagggatttgcccctcgctttttgacaaaaatccctcggtttt 181  Q
    | || ||| ||||||||||| || ||   |||||||||| ||||||    
23702420 acactggggtttgcccctcgtttattttaaaaaatccctgggtttt 23702465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 36 - 181
Target Start/End: Original strand, 23720776 - 23720921
Alignment:
36 cactacaagaataatgaccctttaccagggattttgacaagggtttgaaacccctggcaaatttgccagggaaaataccaaggaaaaccggtggcacaaa 135  Q
    ||||||||||||| | ||| ||| ||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||| ||||| ||||| |||    
23720776 cactacaagaatagttaccttttgccagggattttgacaagggtttgaagcccctggcaaattttccagggaaaatgccaaggacaaccgctggcaaaaa 23720875  T
136 agacagggatttgcccctcgctttttgacaaaaatccctcggtttt 181  Q
    | || ||| ||||||||||| || ||   |||||||||| ||||||    
23720876 acactggggtttgcccctcgtttattttaaaaaatccctgggtttt 23720921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 36 - 181
Target Start/End: Original strand, 23739232 - 23739377
Alignment:
36 cactacaagaataatgaccctttaccagggattttgacaagggtttgaaacccctggcaaatttgccagggaaaataccaaggaaaaccggtggcacaaa 135  Q
    ||||||||||||| | ||| ||| ||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||| ||||| ||||| |||    
23739232 cactacaagaatagttaccttttgccagggattttgacaagggtttgaagcccctggcaaattttccagggaaaatgccaaggacaaccgctggcaaaaa 23739331  T
136 agacagggatttgcccctcgctttttgacaaaaatccctcggtttt 181  Q
    | || ||| ||||||||||| || ||   |||||||||| ||||||    
23739332 acactggggtttgcccctcgtttattttaaaaaatccctgggtttt 23739377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 35 - 119
Target Start/End: Original strand, 6305833 - 6305917
Alignment:
35 gcactacaagaataatgaccctttaccagggattttgacaagggtttgaaacccctggcaaatttgccagggaaaataccaagga 119  Q
    ||||||||||||  |||||  ||| ||||||||||||||| |||||||  |||||||||||||||| |||||||||| |||||||    
6305833 gcactacaagaaatatgacattttgccagggattttgacaggggtttggtacccctggcaaatttgtcagggaaaatgccaagga 6305917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 65 - 124
Target Start/End: Original strand, 46830165 - 46830224
Alignment:
65 gattttgacaagggtttgaaacccctggcaaatttgccagggaaaataccaaggaaaacc 124  Q
    |||||||||| ||||  |||||||||||||||||||||||||||||||||||||| ||||    
46830165 gattttgacaggggtaagaaacccctggcaaatttgccagggaaaataccaaggataacc 46830224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 60 - 111
Target Start/End: Original strand, 20850234 - 20850285
Alignment:
60 ccagggattttgacaagggtttgaaacccctggcaaatttgccagggaaaat 111  Q
    |||||||||||| || |||||||||||||||||||||||||||| |||||||    
20850234 ccagggattttggcaggggtttgaaacccctggcaaatttgccaaggaaaat 20850285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 307; Significance: 1e-173; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 34 - 364
Target Start/End: Original strand, 35593209 - 35593539
Alignment:
34 agcactacaagaataatgaccctttaccagggattttgacaagggtttgaaacccctggcaaatttgccagggaaaataccaaggaaaaccggtggcaca 133  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
35593209 agcactacaagaataatgaccctttgccagggattttgacaagggtttgaaacccctggcaaatttgccagggaaaataccaaggaaaaccggtggcaca 35593308  T
134 aaagacagggatttgcccctcgctttttgacaaaaatccctcggttttgataaggcgccagtttgaaatttgaaaatctgagggaatctgtgcttgtcag 233  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||    
35593309 aaagacagggatttgcccctcgctttttgacaaaaatccctcggttttgataaggcgccagtttgaaatttgaaaatctgtgggaatctgtgcttatcag 35593408  T
234 caaaaaccgacggaaaaagccagggaactgcccctcggtttgagaaaaccaaaggaatccctgcgttttcccagctgagttgacaagggcctgccaaaag 333  Q
    |||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
35593409 caaaaaccgacggaaaaagccagggaacagcccctcggtttgcgaaaaccaaaggaatccctgcgttttcccagctgagttgacaagggcctgccaaaag 35593508  T
334 ctgagcgttgccggcctgccaggggcggaac 364  Q
    ||||||| |||||||||||||||||||||||    
35593509 ctgagcgctgccggcctgccaggggcggaac 35593539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 36 - 364
Target Start/End: Complemental strand, 4969119 - 4968791
Alignment:
36 cactacaagaataatgaccctttaccagggattttgacaagggtttgaaacccctggcaaatttgccagggaaaataccaaggaaaaccggtggcacaaa 135  Q
    ||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
4969119 cactacaagaataatgaccctttgccagagattttgacaagggtttgaaacccctggcaaatttgccagggaaaataccaaggaaaaccggtggcacaaa 4969020  T
136 agacagggatttgcccctcgctttttgacaaaaatccctcggttttgataaggcgccagtttgaaatttgaaaatctgagggaatctgtgcttgtcagca 235  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||    
4969019 agacagggatttgcccctcgctttttgacaaaaatccctcggttttgataaggcgccagtttgaaatttgaaaatctgtgggtatctgtgcttgtcagca 4968920  T
236 aaaaccgacggaaaaagccagggaactgcccctcggtttgagaaaaccaaaggaatccctgcgttttcccagctgagttgacaagggcctgccaaaagct 335  Q
    |||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
4968919 aaaaccgacggaaaaagccagggaacagcccctcggtttgcgaaaaccaaaggaatccctgcgttttcccagctgagttgacaagggcctgccaaaagct 4968820  T
336 gagcgttgccggcctgccaggggcggaac 364  Q
    ||||| |||||||||||||||||||||||    
4968819 gagcgctgccggcctgccaggggcggaac 4968791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 35 - 360
Target Start/End: Complemental strand, 37393340 - 37393015
Alignment:
35 gcactacaagaataatgaccctttaccagggattttgacaagggtttgaaacccctggcaaatttgccagggaaaataccaaggaaaaccggtggcacaa 134  Q
    |||||||||||||||||||| ||| ||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
37393340 gcactacaagaataatgaccttttgccaaggattttgacaagggtttgatacccctggcaaatttgccagggaaaataccaaggaaaaccggtggcacaa 37393241  T
135 aagacagggatttgcccctcgctttttgacaaaaatccctcggttttgataaggcgccagtttgaaatttgaaaatctgagggaatctgtgct-tgtcag 233  Q
    |||||||||||||||||||||||||||| | ||||||||| | |||   | ||||||||| ||||| ||||||||||| ||||||||| |||| ||||||    
37393240 aagacagggatttgcccctcgctttttgtc-aaaatccctggctttattttaggcgccagattgaattttgaaaatctaagggaatctctgctatgtcag 37393142  T
234 caaaaaccgacggaaaaagccagggaactgcccctcggtttgagaaaaccaaaggaatccctgcgttttcccagctgagttgacaagggcctgccaaaag 333  Q
      ||||||||| |||||||||||||||||||||||||||||  ||||  ||||||| ||||||| || | |||| ||| |||||||||||||||||||||    
37393141 agaaaaccgacagaaaaagccagggaactgcccctcggtttccgaaattcaaaggattccctgctttgttccagttgacttgacaagggcctgccaaaag 37393042  T
334 ctgagcgttgccggcctgccaggggcg 360  Q
    |||  ||| || |||||||||||||||    
37393041 ctgtccgtcgcaggcctgccaggggcg 37393015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 36 - 360
Target Start/End: Complemental strand, 11882285 - 11881961
Alignment:
36 cactacaagaataatgaccctttaccagggattttgacaagggtttgaaacccctggcaaatttgccagggaaaataccaaggaaaaccggtggcacaaa 135  Q
    ||||||||||||||||||| ||| |||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| |||||||||||    
11882285 cactacaagaataatgaccttttgccagggattttgacaagggtttgatacccctggcaaatttgtcagggaaaataccaaggaaaactggtggcacaaa 11882186  T
136 agacagggatttgcccctcgctttttgacaaaaatccctcggttttgataaggcgccagtttgaaatttgaaaatctgagggaatctgtgct-tgtcagc 234  Q
    ||||||||||||||||||||||||||| | ||||||||| | |||   | ||||||||||||||| ||||||||||| ||||||||| |||| ||||||     
11882185 agacagggatttgcccctcgctttttgtc-aaaatccctggctttattttaggcgccagtttgaattttgaaaatctaagggaatctctgctatgtcaga 11882087  T
235 aaaaaccgacggaaaaagccagggaactgcccctcggtttgagaaaaccaaaggaatccctgcgttttcccagctgagttgacaagggcctgccaaaagc 334  Q
     |||||||||||||||||||||||||||||||||||||||  ||||  ||| ||| ||||||| || | |||| ||||||||||||||||||||||||||    
11882086 gaaaaccgacggaaaaagccagggaactgcccctcggtttccgaaattcaagggattccctgctttgttccagttgagttgacaagggcctgccaaaagc 11881987  T
335 tgagcgttgccggcctgccaggggcg 360  Q
    ||  ||  || |||||||||||||||    
11881986 tgtccgacgcaggcctgccaggggcg 11881961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 97 - 364
Target Start/End: Original strand, 40654247 - 40654514
Alignment:
97 tttgccagggaaaataccaaggaaaaccggtggcacaaaagacagggatttgcccctcgctttttgacaaaaatccctcggttttgataaggcgccagtt 196  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||||  | |||||||||||    
40654247 tttgccagggaaaataccaaggaaaaccggtggcacaaaagacagggatttgcccctcgctttttgccaaaa-tccgtcggttttttttaggcgccagtt 40654345  T
197 tgaaatttgaaaatctgagggaatctgtgct-tgtcagcaaaaaccgacggaaaaagccagggaactgcccctcggtttgagaaaaccaaaggaatccct 295  Q
    |||| ||||||||||||||||||||| |||| ||||||| |||| ||||||||||||||||||||||||||||||||||| ||||| ||||||| |||||    
40654346 tgaattttgaaaatctgagggaatctctgctatgtcagctaaaaacgacggaaaaagccagggaactgcccctcggtttgcgaaaatcaaaggattccct 40654445  T
296 gcgttttcccagctgagttgacaagggcctgccaaaagctgagcgttgccggcctgccaggggcggaac 364  Q
    |||||||||||||||| ||||||||||||||| |||||||| ||| ||||||| |||||||||| ||||    
40654446 gcgttttcccagctgacttgacaagggcctgcaaaaagctgtgcgctgccggcatgccaggggcagaac 40654514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 36 - 162
Target Start/End: Complemental strand, 7094941 - 7094814
Alignment:
36 cactacaagaataatgaccctttaccagggattttgacaagggtttgaaacccctggcaaatttgccagggaaaataccaaggaaaaccggtggcacaaa 135  Q
    ||||||||||||||||||| ||| ||||  |||||| ||||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||| |||    
7094941 cactacaagaataatgaccttttgccagaaattttgtcaagggtttgaaacccctggcaaatttgccagggaaaatgccaaggacaaccgctggcataaa 7094842  T
136 agacaggga-tttgcccctcgctttttg 162  Q
    ||||||||| ||||||||||||||||||    
7094841 agacagggactttgcccctcgctttttg 7094814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 124
Target Start/End: Original strand, 1696879 - 1696967
Alignment:
36 cactacaagaataatgaccctttaccagggattttgacaagggtttgaaacccctggcaaatttgccagggaaaataccaaggaaaacc 124  Q
    |||||||||||  || ||| ||| ||||||||||||||| || ||| |||||||||| |||| | ||| ||||||| ||||||| ||||    
1696879 cactacaagaaacattaccttttgccagggattttgacagggttttaaaacccctggtaaatataccacggaaaatgccaaggacaacc 1696967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 124
Target Start/End: Complemental strand, 33058117 - 33058029
Alignment:
36 cactacaagaataatgaccctttaccagggattttgacaagggtttgaaacccctggcaaatttgccagggaaaataccaaggaaaacc 124  Q
    |||||||||||  || ||| ||| ||||||||||||||| || ||| |||||||||| |||| | ||| ||||||| ||||||| ||||    
33058117 cactacaagaaacattaccttttgccagggattttgacagggttttaaaacccctggtaaatataccacggaaaatgccaaggacaacc 33058029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 234; Significance: 1e-129; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 36 - 364
Target Start/End: Complemental strand, 19764491 - 19764163
Alignment:
36 cactacaagaataatgaccctttaccagggattttgacaagggtttgaaacccctggcaaatttgccagggaaaataccaaggaaaaccggtggcacaaa 135  Q
    ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
19764491 cactacaagaataatgaccttttgccagggattttgacaagggtttgaaacccctggcaaatttgacagggaaaataccaaggaaaaccggtggcacaaa 19764392  T
136 agacagggatttgcccctcgctttttgacaaaaatccctcggttttgataaggcgccagtttgaaatttgaaaatctgagggaatctgtgct-tgtcagc 234  Q
    ||||||||||||||||||||||||||| | ||||||||||||||||  | ||||||||| ||||| ||| ||||||||||||||||| |||| ||||||     
19764391 agacagggatttgcccctcgctttttg-ccaaaatccctcggttttttttaggcgccagattgaatttttaaaatctgagggaatctctgctatgtcaga 19764293  T
235 aaaaaccgacggaaaaagccagggaactgcccctcggtttgagaaaaccaaaggaatccctgcgttttcccagctgagttgacaagggcctgccaaaagc 334  Q
     |||||||||||||||||||||||||||||||||||||||  ||||| ||||||| ||||||| ||||||||||||| ||||||||||||||||||||||    
19764292 gaaaaccgacggaaaaagccagggaactgcccctcggtttccgaaaatcaaaggattccctgctttttcccagctgacttgacaagggcctgccaaaagc 19764193  T
335 tgagcgttgccggcctgccaggggcggaac 364  Q
    || |||||||||||||||||||||||||||    
19764192 tgtgcgttgccggcctgccaggggcggaac 19764163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 36 - 364
Target Start/End: Complemental strand, 7306169 - 7305841
Alignment:
36 cactacaagaataatgaccctttaccagggattttgacaagggtttgaaacccctggcaaatttgccagggaaaataccaaggaaaaccggtggcacaaa 135  Q
    ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
7306169 cactacaagaataatgaccatttgccagggattttgacaagggtttgaaacccctggcaaatttgccagggaaaataccaaggaaaaccggtggcacaaa 7306070  T
136 agacagggatttgcccctcgctttttgacaaaaatccctcggttttgataaggcgccagtttgaaatttgaaaatctgagggaatctgtgct-tgtcagc 234  Q
    ||||||||||||||||||||||||||| | ||||||| ||||| ||  | ||||||||||||||| ||||||||||||||||||||| |||| ||||||     
7306069 agacagggatttgcccctcgctttttg-ccaaaatccgtcggtattttttaggcgccagtttgaattttgaaaatctgagggaatctctgctatgtcaga 7305971  T
235 aaaaaccgacggaaaaagccagggaactgcccctcggtttgagaaaaccaaaggaatccctgcgttttcccagctgagttgacaagggcctgccaaaagc 334  Q
     |||||||| ||||||||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||| ||||||||||||||||||||||    
7305970 gaaaaccgatggaaaaagccaaggaactgcccctcggtttgcgaaaatcaaaggattccctgcgttttcccagctgacttgacaagggcctgccaaaagc 7305871  T
335 tgagcgttgccggcctgccaggggcggaac 364  Q
    || ||| ||||||| |||||||||||||||    
7305870 tgtgcgctgccggcatgccaggggcggaac 7305841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 36 - 162
Target Start/End: Complemental strand, 21781122 - 21780996
Alignment:
36 cactacaagaataatgaccctttaccagggattttgacaagggtttgaaacccctggcaaatttgccagggaaaataccaaggaaaaccggtggcacaaa 135  Q
    ||||||||||||||||||| ||| |||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||| ||| ||||| ||||| |||    
21781122 cactacaagaataatgaccttttgccagggattttgtcaagg-tttgaaacccctggcaaatttgccagggaaaatgccagggacaaccgctggcagaaa 21781024  T
136 agacaggga-tttgcccctcgctttttg 162  Q
    ||||||||| ||||||||||| ||||||    
21781023 agacagggactttgcccctcgttttttg 21780996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 36 - 155
Target Start/End: Complemental strand, 41201912 - 41201793
Alignment:
36 cactacaagaataatgaccctttaccagggattttgacaagggtttgaaacccctggcaaatttgccagggaaaataccaaggaaaaccggtggcacaaa 135  Q
    ||||||||||||| | ||| ||| ||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||| || || ||||| |||    
41201912 cactacaagaatagttaccttttgccagggattttgacaagggtttgaagcccctggcaaattttccagggaaaatgccaaggacaatcgctggcaaaaa 41201813  T
136 agacagggatttgcccctcg 155  Q
    | || ||| |||||||||||    
41201812 acactggggtttgcccctcg 41201793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 36 - 119
Target Start/End: Original strand, 7916208 - 7916291
Alignment:
36 cactacaagaataatgaccctttaccagggattttgacaagggtttgaaacccctggcaaatttgccagggaaaataccaagga 119  Q
    |||||||||||  |||||  ||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| |||||||    
7916208 cactacaagaaatatgacattttaccagggattttgacaggggtttggaacccctggcaaatttgccagggaaaatgccaagga 7916291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 60 - 162
Target Start/End: Complemental strand, 38705981 - 38705879
Alignment:
60 ccagggattttgacaagggtttgaaacccctggcaaatttgccagggaaaataccaaggaaaaccggtggcacaaaagacaggga-tttgcccctcgctt 158  Q
    |||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||| ||| ||||| ||||| ||||| |||||| ||||||||||| ||    
38705981 ccagggattttgtcaagg-tttgaaacccctggcaaatttgccagggaaaatgccagggacaaccgctggcaaaaaagccagggactttgcccctcgttt 38705883  T
159 tttg 162  Q
    ||||    
38705882 tttg 38705879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 36 - 124
Target Start/End: Original strand, 1534009 - 1534097
Alignment:
36 cactacaagaataatgaccctttaccagggattttgacaagggtttgaaacccctggcaaatttgccagggaaaataccaaggaaaacc 124  Q
    ||||||||||| ||||  | ||| ||| ||||||||||| ||   ||||||||||||||||||||||||||||||| ||||||||||||    
1534009 cactacaagaaaaatgcacatttgccaaggattttgacagggacatgaaacccctggcaaatttgccagggaaaatgccaaggaaaacc 1534097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 35 - 107
Target Start/End: Complemental strand, 18342080 - 18342009
Alignment:
35 gcactacaagaataatgaccctttaccagggattttgacaagggtttgaaacccctggcaaatttgccaggga 107  Q
    ||||||||||||||||  || ||| |||||||||||| ||||| |||||||||||||||||||||||||||||    
18342080 gcactacaagaataatagccttttgccagggattttgtcaagg-tttgaaacccctggcaaatttgccaggga 18342009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 36 - 117
Target Start/End: Original strand, 9670416 - 9670497
Alignment:
36 cactacaagaataatgaccctttaccagggattttgacaagggtttgaaacccctggcaaatttgccagggaaaataccaag 117  Q
    ||||||||||| |||| || ||| | ||||||||||||| |||| |   ||||||||||||||| ||||||||||| |||||    
9670416 cactacaagaaaaatgcccatttgctagggattttgacaggggtattttacccctggcaaatttaccagggaaaatgccaag 9670497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 124
Target Start/End: Original strand, 23769334 - 23769422
Alignment:
36 cactacaagaataatgaccctttaccagggattttgacaagggtttgaaacccctggcaaatttgccagggaaaataccaaggaaaacc 124  Q
    |||||||||||  || ||| ||| ||||||||||||||| || ||| |||||||||| |||| | ||| ||||||| ||||||| ||||    
23769334 cactacaagaaacattaccttttgccagggattttgacagggttttaaaacccctggtaaatataccacggaaaatgccaaggacaacc 23769422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 99
Target Start/End: Original strand, 46419968 - 46420006
Alignment:
61 cagggattttgacaagggtttgaaacccctggcaaattt 99  Q
    |||||||||||||||||  ||||||||||||||||||||    
46419968 cagggattttgacaaggccttgaaacccctggcaaattt 46420006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 37 - 364
Target Start/End: Complemental strand, 16924530 - 16924203
Alignment:
37 actacaagaataatgaccctttaccagggattttgacaagggtttgaaacccctggcaaatttgccagggaaaataccaaggaaaaccggtggcacaaaa 136  Q
    |||||||||||||||||| ||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
16924530 actacaagaataatgaccttttgctagggattttgacaagggtttgaaacccctggcaaatttgccagggaaaataccaaggaaaaccggtggcacaaaa 16924431  T
137 gacagggatttgcccctcgctttttgacaaaaatccctcggttttgataaggcgccagtttgaaatttgaaaatctgagggaatctgtgct-tgtcagca 235  Q
    |||||||||||||||||||||||||| | ||||||||||| ||||  | ||||||||| ||||| ||| ||||||||||||||||| |||| |||||       
16924430 gacagggatttgcccctcgctttttg-ccaaaatccctcgcttttttttaggcgccagattgaatttttaaaatctgagggaatctctgctatgtcaaag 16924332  T
236 aaaaccgacggaaaaagccagggaactgcccctcggtttgagaaaaccaaaggaatccctgcgttttcccagctgagttgacaagggcctgccaaaagct 335  Q
    |||||||||||||||||||||||||||||||||||||||  ||||| ||||||| ||||||| ||||||||||||| |||||||||||||||||||||||    
16924331 aaaaccgacggaaaaagccagggaactgcccctcggtttccgaaaatcaaaggattccctgctttttcccagctgacttgacaagggcctgccaaaagct 16924232  T
336 gagcgttgccggcctgccaggggcggaac 364  Q
    | |||||||||||||||||||||||||||    
16924231 gtgcgttgccggcctgccaggggcggaac 16924203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 97 - 364
Target Start/End: Original strand, 32215122 - 32215389
Alignment:
97 tttgccagggaaaataccaaggaaaaccggtggcacaaaagacagggatttgcccctcgctttttgacaaaaatccctcggttttgataaggcgccagtt 196  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||||  |||||||||||||    
32215122 tttgccagggaaaataccaaggaaaaccggtggcacaaaagacagggatttgcccctcgctttttgccaaaa-tccgtcggttttattaaggcgccagtt 32215220  T
197 tgaaatttgaaaatctgagggaatctgtgct-tgtcagcaaaaaccgacggaaaaagccagggaactgcccctcggtttgagaaaaccaaaggaatccct 295  Q
    |||| ||||||||||||||||||||| |||| ||||||  |||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||    
32215221 tgaattttgaaaatctgagggaatctctgctatgtcagagaaaaccgacggaaaaagccagggaactgcccctcggtttgcgaaaatcaaaggaacccct 32215320  T
296 gcgttttcccagctgagttgacaagggcctgccaaaagctgagcgttgccggcctgccaggggcggaac 364  Q
    |||||||||||||||| |||||||||||||||||||||||||||| ||| |||||||||||||||||||    
32215321 gcgttttcccagctgacttgacaagggcctgccaaaagctgagcgctgcgggcctgccaggggcggaac 32215389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 36 - 124
Target Start/End: Original strand, 5322641 - 5322730
Alignment:
36 cactacaagaataatgaccctttaccagggattttgacaaggg-tttgaaacccctggcaaatttgccagggaaaataccaaggaaaacc 124  Q
    |||||||||||  || ||| |||  |||||||||||||| ||| |||||||||||||| |||||| ||||||||||| ||||||| ||||    
5322641 cactacaagaaacattaccttttgtcagggattttgacagggggtttgaaacccctgggaaatttaccagggaaaatgccaaggataacc 5322730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 36 - 120
Target Start/End: Original strand, 18912802 - 18912886
Alignment:
36 cactacaagaataatgaccctttaccagggattttgacaagggtttgaaacccctggcaaatttgccagggaaaataccaaggaa 120  Q
    ||||||||||| ||||||  ||| ||||||||||||||| ||     ||||| ||||||||||||||||| ||||||||||||||    
18912802 cactacaagaaaaatgactatttgccagggattttgacagggacaaaaaacctctggcaaatttgccaggaaaaataccaaggaa 18912886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 105
Target Start/End: Complemental strand, 34344527 - 34344483
Alignment:
61 cagggattttgacaagggtttgaaacccctggcaaatttgccagg 105  Q
    |||||||||||||||||  |||||||||||||||||||| |||||    
34344527 cagggattttgacaaggccttgaaacccctggcaaatttcccagg 34344483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 92
Target Start/End: Original strand, 14649644 - 14649676
Alignment:
60 ccagggattttgacaagggtttgaaacccctgg 92  Q
    ||||||||||||||| |||||||||||||||||    
14649644 ccagggattttgacaggggtttgaaacccctgg 14649676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 36 - 124
Target Start/End: Complemental strand, 20361081 - 20360993
Alignment:
36 cactacaagaataatgaccctttaccagggattttgacaagggtttgaaacccctggcaaatttgccagggaaaataccaaggaaaacc 124  Q
    |||||||||||  || ||| ||| | ||||||||||||| ||  ||||||||||||||||||||  ||||||  |  ||||||||||||    
20361081 cactacaagaaacattaccttttgctagggattttgacagggtcttgaaacccctggcaaatttctcagggactaagccaaggaaaacc 20360993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 206; Significance: 1e-112; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 36 - 364
Target Start/End: Complemental strand, 11722729 - 11722401
Alignment:
36 cactacaagaataatgaccctttaccagggattttgacaagggtttgaaacccctggcaaatttgccagggaaaataccaaggaaaaccggtggcacaaa 135  Q
    ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
11722729 cactacaagaataatgaccttttgccagggattttgacaagggtttgaaacccctggcaaatttgccagggaaaataccaaggaaaaccagtggcacaaa 11722630  T
136 agacagggatttgcccctcgctttttgacaaaaatccctcggttttgataaggcgccagtttgaaatttgaaaatctgagggaatctgtgct-tgtcagc 234  Q
    ||||||||||||||||||||||||||| | ||||||||||| ||||  | ||||||||| ||||| ||| |||||||||||||||||   || ||||||     
11722629 agacagggatttgcccctcgctttttg-ccaaaatccctcgcttttttttaggcgccagattgaatttttaaaatctgagggaatcttatctatgtcaga 11722531  T
235 aaaaaccgacggaaaaagccagggaactgcccctcggtttgagaaaaccaaaggaatccctgcgttttcccagctgagttgacaagggcctgccaaaagc 334  Q
     ||||||||||||||||||||||||||||||||||| |||  ||||  ||||||| ||||||| ||||||||| ||| ||||||||||||||||||||||    
11722530 gaaaaccgacggaaaaagccagggaactgcccctcgatttccgaaattcaaaggattccctgctttttcccagttgacttgacaagggcctgccaaaagc 11722431  T
335 tgagcgttgccggcctgccaggggcggaac 364  Q
    || |||||||| ||||||||||||||||||    
11722430 tgtgcgttgccagcctgccaggggcggaac 11722401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 36 - 227
Target Start/End: Complemental strand, 16375999 - 16375808
Alignment:
36 cactacaagaataatgaccctttaccagggattttgacaagggtttgaaacccctggcaaatttgccagggaaaataccaaggaaaaccggtggcacaaa 135  Q
    |||| |||||||||||||| ||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||| |||    
16375999 cactgcaagaataatgaccttttgccagggattttgtcaagggtttgaaacccctggcaaatttgccagggaaaatgccaaggacaaccgttggcataaa 16375900  T
136 agacaggga-tttgcccctcgctttttgacaaaaatccctcggttttgataaggcgccagtttgaaatttgaaaatctgagggaatctgtgct 227  Q
    ||||||||| ||||||||||| ||||||  ||||   | | | ||||| | |||||||||||||||| || |||| |||| ||||||| ||||    
16375899 agacagggactttgcccctcgttttttg-taaaatggcgtggcttttgtttaggcgccagtttgaaaattcaaaagctgaaggaatctctgct 16375808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 36 - 246
Target Start/End: Original strand, 9763185 - 9763396
Alignment:
36 cactacaagaataatgaccctttaccagggattttgacaagggtttgaaacccctggcaaatttgccagggaaaataccaaggaaaaccggtggcacaaa 135  Q
    ||||||||||||||||||| ||| |||||||||||| |||||||||||||||| |||||||||||||| ||||||| ||||||| ||||| ||||| |||    
9763185 cactacaagaataatgaccttttgccagggattttgtcaagggtttgaaacccttggcaaatttgccaaggaaaatgccaaggacaaccgctggcataaa 9763284  T
136 agacaggga-tttgcccctcgctttttgacaaaaatccctcggttttgataaggcgccagtttgaaatttgaaaatctgagggaatctgtgct-tgtcag 233  Q
    |||| |||| ||||||||||| ||||||  ||||  || | | ||| | | |||||||||||||||| || |||| |||| ||||||| |||| ||||||    
9763285 agacggggactttgcccctcgttttttg-taaaatgccgtggctttagtttaggcgccagtttgaaaattcaaaagctgaaggaatctctgctgtgtcag 9763383  T
234 caaaaaccgacgg 246  Q
      |||||||||||    
9763384 agaaaaccgacgg 9763396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 29 - 111
Target Start/End: Complemental strand, 35631506 - 35631424
Alignment:
29 tatatagcactacaagaataatgaccctttaccagggattttgacaagggtttgaaacccctggcaaatttgccagggaaaat 111  Q
    |||||| |||||||||||  || ||| ||| |||| |||||||||| ||||||||||||||||| |||||| |||||||||||    
35631506 tatataacactacaagaaacattaccatttgccagagattttgacaggggtttgaaacccctggaaaatttaccagggaaaat 35631424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 36 - 124
Target Start/End: Original strand, 44462714 - 44462801
Alignment:
36 cactacaagaataatgaccctttaccagggattttgacaagggtttgaaacccctggcaaatttgccagggaaaataccaaggaaaacc 124  Q
    |||||||||||||||| || ||| ||||||||||||||||||   |||||||||||| |||||| ||| ||||| | ||||||||||||    
44462714 cactacaagaataatgcccatttgccagggattttgacaaggacatgaaacccctgggaaattttcca-ggaaattgccaaggaaaacc 44462801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 36 - 124
Target Start/End: Original strand, 44470245 - 44470332
Alignment:
36 cactacaagaataatgaccctttaccagggattttgacaagggtttgaaacccctggcaaatttgccagggaaaataccaaggaaaacc 124  Q
    |||||||||||||||| || ||| ||||||||||||||||||   |||||||||||| |||||| ||| ||||| | ||||||||||||    
44470245 cactacaagaataatgcccatttgccagggattttgacaaggacatgaaacccctgggaaattttcca-ggaaattgccaaggaaaacc 44470332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0669 (Bit Score: 196; Significance: 1e-106; HSPs: 1)
Name: scaffold0669
Description:

Target: scaffold0669; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 36 - 364
Target Start/End: Complemental strand, 6908 - 6601
Alignment:
36 cactacaagaataatgaccctttaccagggattttgacaagggtttgaaacccctggcaaatttgccagggaaaataccaaggaaaaccggtggcacaaa 135  Q
    ||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
6908 cactacaagaataatgaccctttgccagggattttgacaaggttttgaaacccctggcaaatttgccagggaaaataccaaggaaaaccggtggcacaaa 6809  T
136 agacagggatttgcccctcgctttttgacaaaaatccctcggttttgataaggcgccagtttgaaatttgaaaatctgagggaatctgtgcttgtcagca 235  Q
    ||||||||||||||||||||||||||| | ||||||| ||||||||  |||||||||||||| || |||||||||| |||                        
6808 agacagggatttgcccctcgctttttg-ccaaaatccgtcggttttattaaggcgccagtttaaattttgaaaatcagag-------------------- 6730  T
236 aaaaccgacggaaaaagccagggaactgcccctcggtttgagaaaaccaaaggaatccctgcgttttcccagctgagttgacaagggcctgccaaaagct 335  Q
    |||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||| |||||| |||||||||||||||||||||||    
6729 aaaaccgacggaaaaagccagggaactgcccctcggtttgcgaaaatcaaaggaatccctgggttttccaagctgacttgacaagggcctgccaaaagct 6630  T
336 gagcgttgccggcctgccaggggcggaac 364  Q
    ||||| |||||||||||||||||||||||    
6629 gagcgctgccggcctgccaggggcggaac 6601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 182; Significance: 3e-98; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 36 - 360
Target Start/End: Complemental strand, 34678745 - 34678421
Alignment:
36 cactacaagaataatgaccctttaccagggattttgacaagggtttgaaacccctggcaaatttgccagggaaaataccaaggaaaaccggtggcacaaa 135  Q
    ||||||||||||||||||| ||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
34678745 cactacaagaataatgaccttttgccagggattttgacaagggtttgatacccctggcaaatttgccagggaaaataccaaggaaaaccggtggcacaaa 34678646  T
136 agacagggatttgcccctcgctttttgacaaaaatccctcggttttgataaggcgccagtttgaaatttgaaaatctgagggaatctgtgct-tgtcagc 234  Q
    |||||||||||||||||| |||||||| | ||||||||| | |||   | ||||||||||||||| ||||||||||| ||||||||  |||| ||||||     
34678645 agacagggatttgccccttgctttttgtc-aaaatccctggctttattttaggcgccagtttgaattttgaaaatctaagggaatccctgctatgtcaga 34678547  T
235 aaaaaccgacggaaaaagccagggaactgcccctcggtttgagaaaaccaaaggaatccctgcgttttcccagctgagttgacaagggcctgccaaaagc 334  Q
     |||||||||||||||||||||||||||||||||||||||  ||||  ||| ||| ||||||| || | |||| |||||||||||||||||||||||||     
34678546 gaaaaccgacggaaaaagccagggaactgcccctcggtttttgaaattcaagggattccctgctttgttccagttgagttgacaagggcctgccaaaagt 34678447  T
335 tgagcgttgccggcctgccaggggcg 360  Q
    ||  ||| || |||||||||||||||    
34678446 tgtccgtcgcaggcctgccaggggcg 34678421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 36 - 169
Target Start/End: Complemental strand, 20339024 - 20338892
Alignment:
36 cactacaagaataatgaccctttaccagggattttgacaagggtttgaaacccctggcaaatttgccagggaaaataccaaggaaaaccggtggcacaaa 135  Q
    ||||||||||||||||||| ||| |||||||||||| ||||||||||| |||||||| |||||||||||||||||| ||||||| ||| | ||||| |||    
20339024 cactacaagaataatgaccttttgccagggattttgtcaagggtttgacacccctggaaaatttgccagggaaaatgccaaggagaactgctggcataaa 20338925  T
136 agacagggatttgcccctcgctttttgacaaaaa 169  Q
    ||||||||| |||||||||| |||||| ||||||    
20338924 agacagggagttgcccctcg-tttttgtcaaaaa 20338892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 39 - 169
Target Start/End: Complemental strand, 49329602 - 49329473
Alignment:
39 tacaagaataatgaccctttaccagggattttgacaagggtttgaaacccctggcaaatttgccagggaaaataccaaggaaaaccggtggcacaaaaga 138  Q
    ||||| |||||||||  ||| |||||||||||| ||| ||||||||||||||||||||||||||||||||||| ||||||| ||| | ||||| ||||||    
49329602 tacaaaaataatgactttttgccagggattttgtcaatggtttgaaacccctggcaaatttgccagggaaaatgccaaggagaactgctggcataaaaga 49329503  T
139 cagggatttgcccctcgctttttgacaaaaa 169  Q
    |||||| ||||||| || |||||| ||||||    
49329502 cagggagttgccccacg-tttttgtcaaaaa 49329473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 36 - 119
Target Start/End: Complemental strand, 2399664 - 2399581
Alignment:
36 cactacaagaataatgaccctttaccagggattttgacaagggtttgaaacccctggcaaatttgccagggaaaataccaagga 119  Q
    |||||||||||  |||||  ||| |||||||||||||||||||||||  ||||||||||||||||||||||||||| |||||||    
2399664 cactacaagaaatatgacattttgccagggattttgacaagggtttggtacccctggcaaatttgccagggaaaatgccaagga 2399581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 83 - 124
Target Start/End: Original strand, 25259510 - 25259551
Alignment:
83 aaacccctggcaaatttgccagggaaaataccaaggaaaacc 124  Q
    |||||||||||||||||||||| |||||| ||||||||||||    
25259510 aaacccctggcaaatttgccagagaaaatgccaaggaaaacc 25259551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 82; Significance: 1e-38; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 36 - 271
Target Start/End: Original strand, 4968258 - 4968494
Alignment:
36 cactacaagaataatgaccctttaccagggattttgacaagggtttgaaacccctggcaaatttgccagggaaaataccaaggaaaaccggtggcacaaa 135  Q
    ||||||||||||||||||| ||| |||||||||||| |||||||||||||||||| |||||||||||||||||||| ||||||| ||||| || || |||    
4968258 cactacaagaataatgaccttttgccagggattttgtcaagggtttgaaacccctcgcaaatttgccagggaaaatgccaaggagaaccgctgacataaa 4968357  T
136 agacaggga-tttgcccctcgctttttgacaaaaatccctcggttttgataaggcgccagtttgaaatttgaaaatctgagggaatctgtgct-tgtcag 233  Q
    ||||| ||| ||||||||||| ||||||  ||||  |||| | ||| | | |||||||||||| ||| || |||| |||| ||||||| |||| ||||||    
4968358 agacatggattttgcccctcgttttttg-taaaatgccctggttttagtttaggcgccagtttaaaaattcaaaagctgaaggaatctctgctgtgtcag 4968456  T
234 caaaaaccgacggaaaaagccagggaactgcccctcgg 271  Q
      |||||||||||   | ||||||||  ||||||||||    
4968457 agaaaaccgacggcttatgccagggatgtgcccctcgg 4968494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 36 - 181
Target Start/End: Complemental strand, 13338178 - 13338033
Alignment:
36 cactacaagaataatgaccctttaccagggattttgacaagggtttgaaacccctggcaaatttgccagggaaaataccaaggaaaaccggtggcacaaa 135  Q
    ||||||||||||| | ||| ||| ||| ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| ||||| ||||| |||    
13338178 cactacaagaatagttaccttttgccaaggattttgacaagggtttgaagcccctggcaaatttgccagggaaaatgccaaggacaaccgctggcaaaaa 13338079  T
136 agacagggatttgcccctcgctttttgacaaaaatccctcggtttt 181  Q
    | || ||| ||||||||||| || ||   |||||||||| ||||||    
13338078 acactggggtttgcccctcgtttattttaaaaaatccctgggtttt 13338033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 36 - 181
Target Start/End: Original strand, 28902826 - 28902971
Alignment:
36 cactacaagaataatgaccctttaccagggattttgacaagggtttgaaacccctggcaaatttgccagggaaaataccaaggaaaaccggtggcacaaa 135  Q
    ||||||||||||| | ||| ||| ||||||||||||||||||||||||| ||||||||||||||| |||||||||| ||||||| ||||| ||||| |||    
28902826 cactacaagaatagttaccttttgccagggattttgacaagggtttgaagcccctggcaaatttgtcagggaaaatgccaaggacaaccgctggcaaaaa 28902925  T
136 agacagggatttgcccctcgctttttgacaaaaatccctcggtttt 181  Q
    | || ||| ||||||||||| || ||   |||||||||| ||||||    
28902926 acactggggtttgcccctcgtttattttaaaaaatccctgggtttt 28902971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 60 - 168
Target Start/End: Complemental strand, 4449274 - 4449166
Alignment:
60 ccagggattttgacaagggtttgaaacccctggcaaatttgccagggaaaataccaaggaaaaccggtggcacaaaagacaggga-tttgcccctcgctt 158  Q
    |||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||| ||| ||||| ||||| ||||| |||||| ||||||||||| ||    
4449274 ccagggattttgtcaagg-tttgaaacccctggcaaatttgccagggaaaatgccagggacaaccgctggcaaaaaagccagggactttgcccctcgttt 4449176  T
159 tttgacaaaa 168  Q
    |||| |||||    
4449175 tttgtcaaaa 4449166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 60 - 162
Target Start/End: Original strand, 13507567 - 13507669
Alignment:
60 ccagggattttgacaagggtttgaaacccctggcaaatttgccagggaaaataccaaggaaaaccggtggcacaaaagacaggga-tttgcccctcgctt 158  Q
    |||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||| ||| ||||| ||||| ||||| |||||| ||||||||||| ||    
13507567 ccagggattttgtcaagg-tttgaaacccctggcaaatttgccagggaaaatgccagggacaaccgctggcaaaaaagccagggactttgcccctcgttt 13507665  T
159 tttg 162  Q
    ||||    
13507666 tttg 13507669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 36 - 119
Target Start/End: Original strand, 31519894 - 31519977
Alignment:
36 cactacaagaataatgaccctttaccagggattttgacaagggtttgaaacccctggcaaatttgccagggaaaataccaagga 119  Q
    |||||||||||  |||||  ||| ||||||||||||||| ||||||| |||||||||||||||||||||||||||| |||||||    
31519894 cactacaagaaatatgacattttgccagggattttgacaggggtttggaacccctggcaaatttgccagggaaaatgccaagga 31519977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 36 - 119
Target Start/End: Complemental strand, 17311518 - 17311435
Alignment:
36 cactacaagaataatgaccctttaccagggattttgacaagggtttgaaacccctggcaaatttgccagggaaaataccaagga 119  Q
    |||||||||||  |||||  ||| ||||||||||||||| ||||||| ||||||||| |||||||||||||||||| |||||||    
17311518 cactacaagaaatatgacattttgccagggattttgacaggggtttggaacccctgggaaatttgccagggaaaatgccaagga 17311435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 36 - 95
Target Start/End: Original strand, 28679082 - 28679140
Alignment:
36 cactacaagaataatgaccctttaccagggattttgacaagggtttgaaacccctggcaa 95  Q
    |||||||||||||||| || ||| |||||||||||| ||| |||||||||||||||||||    
28679082 cactacaagaataatggccttttgccagggattttgtcaa-ggtttgaaacccctggcaa 28679140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 106
Target Start/End: Original strand, 20106166 - 20106236
Alignment:
36 cactacaagaataatgaccctttaccagggattttgacaagggtttgaaacccctggcaaatttgccaggg 106  Q
    |||||||||||  |||||   || ||||||||||||||| |||||| |||||||||| |||||||||||||    
20106166 cactacaagaaatatgacatattgccagggattttgacaggggttttaaacccctgggaaatttgccaggg 20106236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0260 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: scaffold0260
Description:

Target: scaffold0260; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 36 - 169
Target Start/End: Complemental strand, 1347 - 1215
Alignment:
36 cactacaagaataatgaccctttaccagggattttgacaagggtttgaaacccctggcaaatttgccagggaaaataccaaggaaaaccggtggcacaaa 135  Q
    ||||||||||||||||||| ||| |||||||||||| ||||||||||| |||||||| |||||||||||||||||| ||||||| ||| | ||||| |||    
1347 cactacaagaataatgaccttttgccagggattttgtcaagggtttgacacccctggaaaatttgccagggaaaatgccaaggagaactgctggcataaa 1248  T
136 agacagggatttgcccctcgctttttgacaaaaa 169  Q
    ||||||||| |||||||||| |||||| ||||||    
1247 agacagggagttgcccctcg-tttttgtcaaaaa 1215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: scaffold0214
Description:

Target: scaffold0214; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 36 - 162
Target Start/End: Complemental strand, 456 - 330
Alignment:
36 cactacaagaataatgaccctttaccagggattttgacaagggtttgaaacccctggcaaatttgccagggaaaataccaaggaaaaccggtggcacaaa 135  Q
    |||||||||||||||| || ||| |||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||| ||| ||||| ||||| |||    
456 cactacaagaataatggccttttgccagggattttgtcaagg-tttgaaacccctggcaaatttgccagggaaaatgccagggacaaccgctggcaaaaa 358  T
136 agacaggga-tttgcccctcgctttttg 162  Q
    ||||||||| ||||||||||| ||||||    
357 agacagggactttgcccctcgttttttg 330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0573 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: scaffold0573
Description:

Target: scaffold0573; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 36 - 181
Target Start/End: Complemental strand, 6968 - 6823
Alignment:
36 cactacaagaataatgaccctttaccagggattttgacaagggtttgaaacccctggcaaatttgccagggaaaataccaaggaaaaccggtggcacaaa 135  Q
    ||||||||||||| | ||| ||| ||||||||||||||||||||||||| ||||||||||||||| |||||||||| ||||||| ||||| ||||| |||    
6968 cactacaagaatagttaccttttgccagggattttgacaagggtttgaagcccctggcaaatttgtcagggaaaatgccaaggacaaccgctggcaaaaa 6869  T
136 agacagggatttgcccctcgctttttgacaaaaatccctcggtttt 181  Q
    | || ||| ||||||||||| || ||   |||||||||| ||||||    
6868 acactggggtttgcccctcgtttattttaaaaaatccctgggtttt 6823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1414 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: scaffold1414
Description:

Target: scaffold1414; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 30 - 162
Target Start/End: Original strand, 1155 - 1290
Alignment:
30 atatagcactacaagaataatgaccctttaccagggattttgacaagggtttgaaacccctggca---aatttgccagggaaaataccaaggaaaaccgg 126  Q
    |||| ||||||||||||||||| || ||| |||||||||||| ||||| ||||||||||||||||   ||||||||||||||||| ||| ||| |||||     
1155 atatcgcactacaagaataatggccttttgccagggattttgtcaagg-tttgaaacccctggcagcaaatttgccagggaaaatgccagggacaaccgc 1253  T
127 tggcacaaaagacaggga-tttgcccctcgctttttg 162  Q
    ||||| |||||||||||| ||||||||||| ||||||    
1254 tggcaaaaaagacagggactttgcccctcgttttttg 1290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 7e-25; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 67 - 181
Target Start/End: Complemental strand, 2063664 - 2063550
Alignment:
67 ttttgacaagggtttgaaacccctggcaaatttgccagggaaaataccaaggaaaaccggtggcacaaaagacagggatttgcccctcgctttttgacaa 166  Q
    |||||||||||||||||| |||||||||||||||||||||||||| ||||||| ||||| ||||| |||| || ||| ||||||||||| || ||   ||    
2063664 ttttgacaagggtttgaagcccctggcaaatttgccagggaaaatgccaaggacaaccgctggcaaaaaacactggggtttgcccctcgtttattttaaa 2063565  T
167 aaatccctcggtttt 181  Q
    |||||||| ||||||    
2063564 aaatccctgggtttt 2063550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 60 - 162
Target Start/End: Complemental strand, 33891961 - 33891859
Alignment:
60 ccagggattttgacaagggtttgaaacccctggcaaatttgccagggaaaataccaaggaaaaccggtggcacaaaagacaggga-tttgcccctcgctt 158  Q
    |||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||| ||| ||||| ||||| ||||| |||||| ||||||||||| ||    
33891961 ccagggattttgtcaagg-tttgaaacccctggcaaatttgccagggaaaatgccagggacaaccgctggcaaaaaagccagggactttgcccctcgttt 33891863  T
159 tttg 162  Q
    ||||    
33891862 tttg 33891859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 60 - 107
Target Start/End: Complemental strand, 37574946 - 37574900
Alignment:
60 ccagggattttgacaagggtttgaaacccctggcaaatttgccaggga 107  Q
    |||||||||||| ||||| |||||||||||||||||||||||||||||    
37574946 ccagggattttgtcaagg-tttgaaacccctggcaaatttgccaggga 37574900  T

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Target: scaffold1371 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold1371
Description:

Target: scaffold1371; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 36 - 117
Target Start/End: Complemental strand, 1899 - 1818
Alignment:
36 cactacaagaataatgaccctttaccagggattttgacaagggtttgaaacccctggcaaatttgccagggaaaataccaag 117  Q
    ||||||||||| |||| || ||| | ||||||||||||| ||||   ||||||||||||||||| ||||||||||| |||||    
1899 cactacaagaaaaatgcccatttgctagggattttgacaggggtaaaaaacccctggcaaatttaccagggaaaatgccaag 1818  T

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Target: scaffold0005 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 92
Target Start/End: Complemental strand, 167648 - 167616
Alignment:
60 ccagggattttgacaagggtttgaaacccctgg 92  Q
    ||||||||||||||| |||||||||||||||||    
167648 ccagggattttgacaggggtttgaaacccctgg 167616  T

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