View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5005-Insertion-4 (Length: 465)
Name: NF5005-Insertion-4
Description: NF5005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5005-Insertion-4 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 418; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 7 - 465
Target Start/End: Original strand, 52511761 - 52512219
Alignment:
| Q |
7 |
agtacctatgtgttacctttaataaatcagtcacttgtttgtcaattttgaacttgctcataaaagttttaatctttctctcttttctcatggaaatatt |
106 |
Q |
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| T |
52511761 |
agtacctatgtgttacctttaataaatcagtcatttatttgtcaattttgaacttgctcataaaagttttaatctttctctcttttctcatggaaatatt |
52511860 |
T |
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| Q |
107 |
ggcattactagagttcgcgatgagatttgaactctgtctcttaaaattacaaagtcaaactcttacggttgagctgacattcgtatcttattagtttcta |
206 |
Q |
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| T |
52511861 |
ggcattactagagttcgcgatgagatttgaactctgtctcttaaaattacaaagtcaaactcttacagttgagctgacattcgtatcttattagtttcta |
52511960 |
T |
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| Q |
207 |
ccagtatttgattcactgataacttctttcagggcttattatattcccatctccagcaaatttacacgggtatccattccctatcgaaacacctggttct |
306 |
Q |
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| T |
52511961 |
tcagtatttgattcactgacaacttctttcagggcttattatattcccatctccagcaaatttacacgggtatccattccctatcgaaacacctggttct |
52512060 |
T |
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| Q |
307 |
tcccaccagagagattcacatagaaccattgcacctagctctccatcaatatcaaatggtaatctcattcccttgatcgattaaatagtcctcggatcac |
406 |
Q |
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| T |
52512061 |
tcccaccagagagattcacatagaaccattgcacctagctctccatcaatatcaaatggtaatctcattcccttgatcgattaaatagtcctcggatcac |
52512160 |
T |
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| Q |
407 |
ctgaccaatgtatatgnnnnnnncattatccaggacccttctctcaccctccaatagga |
465 |
Q |
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| T |
52512161 |
ctgaccaatgtatatgtttttttcattatccaggacccttctctcaccctccaatagga |
52512219 |
T |
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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 125 - 171
Target Start/End: Complemental strand, 29571548 - 29571502
Alignment:
| Q |
125 |
gatgagatttgaactctgtctcttaaaattacaaagtcaaactctta |
171 |
Q |
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| T |
29571548 |
gatgaaatttgaactctgactcttaaaattacaacgtcatactctta |
29571502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 128 - 172
Target Start/End: Complemental strand, 1406367 - 1406323
Alignment:
| Q |
128 |
gagatttgaactctgtctcttaaaattacaaagtcaaactcttac |
172 |
Q |
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| T |
1406367 |
gagatttgaactccgtcccttaaagttacaaagtcaaactattac |
1406323 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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