View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5005-Insertion-5 (Length: 308)
Name: NF5005-Insertion-5
Description: NF5005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5005-Insertion-5 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 7 - 308
Target Start/End: Complemental strand, 40063350 - 40063048
Alignment:
| Q |
7 |
acagagtactctgttttcttttcttttctccatcatcatcatcaannnnnnn-cccttatacacgtttttatcacatctattttttccttgtcagagaaa |
105 |
Q |
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| T |
40063350 |
acagagtactctgttttcttttctattctccatcatcatcatcaattttttttcccttatacacgtttttatcacatctattttttccttgtcagagaaa |
40063251 |
T |
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| Q |
106 |
aaacagtttccttaatcttcataataactctatactacgtatctttcaaacttcaaacgtcacaacccatttcataactcaacacaacaatttattattt |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40063250 |
aaacagtttccttaatcttcataataactctatactacgtatctttcaaacttcaaacgtcacaacccatttcataactcaacacaacaatttattattt |
40063151 |
T |
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| Q |
206 |
attattacaacacagcacaaacccgcttcacttcacttctacaagaaattgttagaatatggggaattgtcaagctgcagaattggcaacagttgtgatt |
305 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40063150 |
attattacaacacagcacaaacccacttcacttcacttctacaagaaattgttagaatatggggaattgtcaagctgcagaattggcaacagttgtgatt |
40063051 |
T |
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| Q |
306 |
cat |
308 |
Q |
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||| |
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| T |
40063050 |
cat |
40063048 |
T |
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