View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5005-Insertion-6 (Length: 195)
Name: NF5005-Insertion-6
Description: NF5005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5005-Insertion-6 |
 | |
|
| [»] scaffold0115 (2 HSPs) |
| |
|
Alignment Details
Target: scaffold0115 (Bit Score: 134; Significance: 6e-70; HSPs: 2)
Name: scaffold0115
Description:
Target: scaffold0115; HSP #1
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 8 - 195
Target Start/End: Original strand, 5348 - 5537
Alignment:
| Q |
8 |
gaacctatgattgcaaatttataaactcataaataactagtatcgttataaatatttatttaaatgctagagcaaaattggaatgttcccaatggtagaa |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
5348 |
gaacctatgattgcaaatttataaactcataaataactagtatcgttataaatattcatttaaacgctagagcaaaattggaatgttcccaatggtagaa |
5447 |
T |
|
| Q |
108 |
ttagaatacctcttttgatgcatcagtaagg--ttgnnnnnnncttctgtagctattatctccaccatcaaagaacattaactaatttcc |
195 |
Q |
| |
|
||| |||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
5448 |
ttatcatacctcttttgatgcatcagtaaggttttttttttttcttctgtagctattatctccaccatcaaagaacattcactaatttcc |
5537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0115; HSP #2
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 8 - 195
Target Start/End: Original strand, 13088 - 13277
Alignment:
| Q |
8 |
gaacctatgattgcaaatttataaactcataaataactagtatcgttataaatatttatttaaatgctagagcaaaattggaatgttcccaatggtagaa |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
13088 |
gaacctatgattgcaaatttataaactcataaataactagtatcgttataaatattcatttaaacgctagagcaaaattggaatgttcccaatggtagaa |
13187 |
T |
|
| Q |
108 |
ttagaatacctcttttgatgcatcagtaagg--ttgnnnnnnncttctgtagctattatctccaccatcaaagaacattaactaatttcc |
195 |
Q |
| |
|
||| |||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
13188 |
ttatcatacctcttttgatgcatcagtaaggttttttttttttcttctgtagctattatctccaccatcaaagaacattcactaatttcc |
13277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 118; Significance: 2e-60; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 8 - 194
Target Start/End: Original strand, 19344872 - 19345057
Alignment:
| Q |
8 |
gaacctatgattgcaaatttataaactcataaataactagtatcgttataaatatttatttaaatgctagagcaaaattggaatgttcccaatggtagaa |
107 |
Q |
| |
|
||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| ||||||| || |
|
|
| T |
19344872 |
gaacctatgattgaaaatttatgaactcataaataactagtatcgttataaatatttatttaaatgctagtgcaaaattggaatattcctaatggta-aa |
19344970 |
T |
|
| Q |
108 |
ttagaatacctcttttgatgcatcagtaaggttgnnnnnnncttctgtagctattatctccaccatcaaagaacattaactaatttc |
194 |
Q |
| |
|
||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
19344971 |
gtagcatacctcttttgatgcatcagtaaggtttttttttttttctgtagctattatctccaccatcaaagaacatttactaatttc |
19345057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 111; Significance: 3e-56; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 8 - 141
Target Start/End: Original strand, 8480218 - 8480352
Alignment:
| Q |
8 |
gaacctatgattgcaaatttataaactcataaataactagtatcgttataaatattt-atttaaatgctagagcaaaattggaatgttcccaatggtaga |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
8480218 |
gaacctatgattgcaaatttataaactcataaataactagtatcgttataaatattttatttaaatgctacagcaaaattggaatgtttccaatggtaga |
8480317 |
T |
|
| Q |
107 |
attagaatacctcttttgatgcatcagtaaggttg |
141 |
Q |
| |
|
||||| |||||||||||||||||| |||||||||| |
|
|
| T |
8480318 |
attagcatacctcttttgatgcataagtaaggttg |
8480352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University