View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5005-Insertion-8 (Length: 293)
Name: NF5005-Insertion-8
Description: NF5005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5005-Insertion-8 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 5 - 293
Target Start/End: Original strand, 45860187 - 45860475
Alignment:
| Q |
5 |
acataaacctgaaccgtcataaaacatttcactataactgaatggctggaattaaatcgcaacttatttcaacacccttaatctgtgactgtttactcgg |
104 |
Q |
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| T |
45860187 |
acataaacctgaaccgtcataaaacatttcactataactgaatggctggaattaaatcgcaacttatttcaacacccttggtctgtgactgtttactcgg |
45860286 |
T |
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| Q |
105 |
cccaattaataaggtactcggcaagggtttgtatgacatgggccgagtagaatccaaataggcgcaggttccaaggatccctcaaccaaaaccgtagctt |
204 |
Q |
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| T |
45860287 |
cccaattaataaggtactcggcaagggtttgtatgacatgggccgagtagaatccaaaatggcgcaggttccaaggatccctcaaccaaaaccgtagctt |
45860386 |
T |
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| Q |
205 |
agtaggctgccaagacagtggaaatcatagctaaatggggagaaggaatagcataaaaaggaagatcaaaacaaagaaaacctaagtca |
293 |
Q |
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| T |
45860387 |
agtaggctgccaagacagtggaaatcatagctaaatggggagaaggaatagcataaaaaggaagatcaaaacaaagaaaacctaagtca |
45860475 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 5 - 83
Target Start/End: Original strand, 27003948 - 27004026
Alignment:
| Q |
5 |
acataaacctgaaccgtcataaaacatttcactataactgaatggctggaattaaatcgcaacttatttcaacaccctt |
83 |
Q |
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| T |
27003948 |
acataaacctgaaccgtcgtaaaacatttcactataactgaatggttggaattaaatcacaacttatttcaataccctt |
27004026 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 161 - 245
Target Start/End: Original strand, 27004067 - 27004151
Alignment:
| Q |
161 |
aataggcgcaggttccaaggatccctcaaccaaaaccgtagcttagtaggctgccaagacagtggaaatcatagctaaatgggga |
245 |
Q |
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| T |
27004067 |
aataggcgtaggttccaaggataccccaactaaaaccgtagcttagtagggtgcctacagagcagaaatcttagctaaatgggga |
27004151 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 5 - 83
Target Start/End: Complemental strand, 35537295 - 35537217
Alignment:
| Q |
5 |
acataaacctgaaccgtcataaaacatttcactataactgaatggctggaattaaatcgcaacttatttcaacaccctt |
83 |
Q |
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| T |
35537295 |
acataaacctgaaccgtcgtaaaacatttcactataactgaatggttggaattaaatcacaacttatttcaataccctt |
35537217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 161 - 245
Target Start/End: Complemental strand, 35537176 - 35537092
Alignment:
| Q |
161 |
aataggcgcaggttccaaggatccctcaaccaaaaccgtagcttagtaggctgccaagacagtggaaatcatagctaaatgggga |
245 |
Q |
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| T |
35537176 |
aataggcgtaggttccaaggataccccaacaaaaaccgtagcttagtagggtgcctacagagcagaaatcttagctaaatgggga |
35537092 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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