View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5005_high_1 (Length: 611)

Name: NF5005_high_1
Description: NF5005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5005_high_1
NF5005_high_1
[»] chr3 (16 HSPs)
chr3 (242-479)||(8349969-8350207)
chr3 (293-472)||(8252867-8253046)
chr3 (304-528)||(8352758-8353004)
chr3 (278-479)||(8260574-8260793)
chr3 (318-469)||(8356339-8356508)
chr3 (380-469)||(8360592-8360681)
chr3 (387-467)||(8334134-8334214)
chr3 (133-178)||(8349624-8349669)
chr3 (289-380)||(8265551-8265642)
chr3 (290-364)||(8334018-8334093)
chr3 (385-475)||(8258592-8258682)
chr3 (289-380)||(8258478-8258569)
chr3 (385-475)||(8265665-8265755)
chr3 (551-591)||(8353006-8353046)
chr3 (491-528)||(8350237-8350274)
chr3 (321-380)||(8360515-8360574)
[»] chr1 (1 HSPs)
chr1 (44-168)||(44799682-44799806)


Alignment Details
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 242 - 479
Target Start/End: Original strand, 8349969 - 8350207
Alignment:
Q  242 gttgattacactcttcttgat-aagtagcagatgtaaattaatactacatgactacaagcgcgagggataatagttaacagggaaataagaaactacaat 340  Q
    |||||||||||||||  | || |||||||||||||||||||| | | |||||||||||||| |||||||||||||||||||||||||||||||||| |||    
T  8349969 gttgattacactcttgataattaagtagcagatgtaaattaacattgcatgactacaagcgtgagggataatagttaacagggaaataagaaactataat 8350068  T
Q  341 cggagctccctttgatttttccttcctctttgatttctcttgacatgaattttcagcattatcagaaacttgagatgatgagtttgaagaaggaccaaaa 440  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  8350069 tggagctccctttgatttttccttcctctttgatttctcttgacatgaattttcagcattatcagaaacttgagaagatgagtttgaagaaggaccaaaa 8350168  T
Q  441 caattgaagaaagatgaaatcaaagccatcaaaaagtga 479  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  8350169 caattgaagaatgatgaaatcaaagccatcaaaaagtga 8350207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 293 - 472
Target Start/End: Original strand, 8252867 - 8253046
Alignment:
Q  293 ctacaagcgcgagggataatagttaacagggaaataagaaactacaatcggagctccctttgatttttccttcctctttgatttctcttgacatgaattt 392  Q
    ||||||||| ||| || ||| |||||||| ||||||||||||| |||| ||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  8252867 ctacaagcgtgagagacaattgttaacagagaaataagaaactgcaattggagctccctttgatttttccttcctctttggtttctcttgacatgaattt 8252966  T
Q  393 tcagcattatcagaaacttgagatgatgagtttgaagaaggaccaaaacaattgaagaaagatgaaatcaaagccatcaa 472  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  8252967 tcagcattatcagaaacttgagaagatgagtttgaagaaggaccaaaacaattgaagaatgatgaaatcaaagccatcaa 8253046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 304 - 528
Target Start/End: Original strand, 8352758 - 8353004
Alignment:
Q  304 agggataatagttaacagggaaataagaaactacaatcggagctccctttgatttttccttcctctttgatttctct------------------tgaca 385  Q
    ||||||||||||||||||||||||||||||||||||| | |||||| || ||||||||||| |||||| |||| |||                  ||| |    
T  8352758 agggataatagttaacagggaaataagaaactacaattgaagctccattagatttttcctttctctttaatttttctgaagatgaagatttcgattgaga 8352857  T
Q  386 tgaattttcagcattatcagaaacttgagatgatgagtttgaagaaggaccaaaacaattgaagaaagatgaaatcaaagccatcaaaaagtgacttggt 485  Q
    ||| |||||| ||| |||| |||||||||| |||||||| |||||||||||||| |||||||| || ||||||||||||||||||||||||||| |||||    
T  8352858 tgatttttcatcataatcataaacttgagaagatgagttcgaagaaggaccaaagcaattgaaaaatgatgaaatcaaagccatcaaaaagtgatttggt 8352957  T
Q  486 ttaca----aatgaaatgaagatttaggtgtgacttgaaattgcagt 528  Q
    || ||    |||||||||| ||||||||||||||||||||| |||||    
T  8352958 ttgcactgcaatgaaatgaggatttaggtgtgacttgaaatcgcagt 8353004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 278 - 479
Target Start/End: Original strand, 8260574 - 8260793
Alignment:
Q  278 attaatactacatgactacaagcgcgagggataatagttaacagggaaataagaaactacaatcggagctccctttgatttttccttcctcttt------ 371  Q
    ||||||||| ||||||||||| || ||| ||||| |||||||||||||||||||||||||||| ||||||| |||||||||||| || ||||||          
T  8260574 attaatactgcatgactacaaacgtgagagataagagttaacagggaaataagaaactacaattggagctctctttgatttttctttgctcttttgtttc 8260673  T
Q  372 ------------gatttctcttgacatgaattttcagcattatcagaaacttgagatgatgagtttgaagaaggaccaaaacaattgaagaaagatgaaa 459  Q
                ||||||  || | |||| |||||| ||| ||||||||||||||||||||||| | ||||| | ||||| ||| | ||||| |||||||    
T  8260674 tctaaagatgaagatttcaatttagatgatttttcatcataatcagaaacttgagatgatgagtctaaagaatggccaaagcaacttaagaaggatgaaa 8260773  T
Q  460 tcaaagccatcaaaaagtga 479  Q
    ||||||||||||||||||||    
T  8260774 tcaaagccatcaaaaagtga 8260793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 318 - 469
Target Start/End: Original strand, 8356339 - 8356508
Alignment:
Q  318 acagggaaataagaaactacaatcggagctccctttgatttttccttcctctttgatttctct------------------tgacatgaattttcagcat 399  Q
    ||||||||||||| ||||||||| ||||||||| ||||||||||||| ||||||| |||||||                  ||| ||||||||| |||||    
T  8356339 acagggaaataaggaactacaattggagctcccattgatttttccttgctctttggtttctctgaagttgaagatttcatttgagatgaattttgagcat 8356438  T
Q  400 tatcagaaacttgagatgatgagtttgaagaaggaccaaaacaattgaagaaagatgaaatcaaagccat 469  Q
     ||||||||||||||||||||||||||||||  ||||||| ||||||||||| | | |||||||||||||    
T  8356439 aatcagaaacttgagatgatgagtttgaagagagaccaaagcaattgaagaacggtaaaatcaaagccat 8356508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 380 - 469
Target Start/End: Original strand, 8360592 - 8360681
Alignment:
Q  380 ttgacatgaattttcagcattatcagaaacttgagatgatgagtttgaagaaggaccaaaacaattgaagaaagatgaaatcaaagccat 469  Q
    |||| ||||||||||| ||| ||||||||||||||||||| ||||||||||  |||| || ||||||||||||| |||||||||||||||    
T  8360592 ttgagatgaattttcaacataatcagaaacttgagatgataagtttgaagagagaccgaagcaattgaagaaagctgaaatcaaagccat 8360681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 387 - 467
Target Start/End: Original strand, 8334134 - 8334214
Alignment:
Q  387 gaattttcagcattatcagaaacttgagatgatgagtttgaagaaggaccaaaacaattgaagaaagatgaaatcaaagcc 467  Q
    |||||||||||||| ||| ||||||| || ||||||||||||||||||||||||||||||||| | | ||| |||||||||    
T  8334134 gaattttcagcattctcataaacttgtgaagatgagtttgaagaaggaccaaaacaattgaagtatggtgatatcaaagcc 8334214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 133 - 178
Target Start/End: Original strand, 8349624 - 8349669
Alignment:
Q  133 tttaagctgaaccagattcttgtgccgcaagcaaccaatcattgaa 178  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  8349624 tttaagctgaaccagattcttgtgccgcaagcaaccaatcattgaa 8349669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 289 - 380
Target Start/End: Original strand, 8265551 - 8265642
Alignment:
Q  289 atgactacaagcgcgagggataatagttaacagggaaataagaaactacaatcggagctccctttgatttttccttcctctttgatttctct 380  Q
    |||||||||| || ||| ||||| ||||| ||||||||| | | |||||||| ||||||||||||||||||||||| ||||||  |||||||    
T  8265551 atgactacaaacgagagagataagagttagcagggaaatgatatactacaattggagctccctttgatttttccttactcttttgtttctct 8265642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 290 - 364
Target Start/End: Original strand, 8334018 - 8334093
Alignment:
Q  290 tgactacaagcgcgaggg-ataatagttaacagggaaataagaaactacaatcggagctccctttgatttttcctt 364  Q
    |||||||||||| ||||| ||||||||||||  ||||||||||||||||||| ||| |||| ||||||||||||||    
T  8334018 tgactacaagcgtgaggggataatagttaacgaggaaataagaaactacaattggaactccttttgatttttcctt 8334093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 385 - 475
Target Start/End: Original strand, 8258592 - 8258682
Alignment:
Q  385 atgaattttcagcattatcagaaacttgagatgatgagtttgaagaaggaccaaaacaattgaagaaagatgaaatcaaagccatcaaaaa 475  Q
    |||| |||||| ||| ||||||||||||||||||||||||||||||| | ||||| ||| | || |  ||||||||||||||||| |||||    
T  8258592 atgatttttcatcataatcagaaacttgagatgatgagtttgaagaatggccaaagcaacttaaaatggatgaaatcaaagccataaaaaa 8258682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 289 - 380
Target Start/End: Original strand, 8258478 - 8258569
Alignment:
Q  289 atgactacaagcgcgagggataatagttaacagggaaataagaaactacaatcggagctccctttgatttttccttcctctttgatttctct 380  Q
    |||||||||| || ||| ||||| |||||  |||||||| | | |||||||| ||||||||||||||||||||||| ||||||  |||||||    
T  8258478 atgactacaaacgtgagagataagagttagtagggaaatgatatactacaattggagctccctttgatttttccttactcttttgtttctct 8258569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 385 - 475
Target Start/End: Original strand, 8265665 - 8265755
Alignment:
Q  385 atgaattttcagcattatcagaaacttgagatgatgagtttgaagaaggaccaaaacaattgaagaaagatgaaatcaaagccatcaaaaa 475  Q
    |||| |||||| ||| ||||||||||||||| ||||||| | ||||| | ||||| ||| | ||||| ||||||||||||||||| |||||    
T  8265665 atgatttttcatcataatcagaaacttgagacgatgagtctaaagaatggccaaagcaacttaagaaggatgaaatcaaagccataaaaaa 8265755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 551 - 591
Target Start/End: Original strand, 8353006 - 8353046
Alignment:
Q  551 tgcaaagcttaaatgatttagttgtaatattggtttaaatt 591  Q
    |||||||||||||||||||||||||||||||||||| ||||    
T  8353006 tgcaaagcttaaatgatttagttgtaatattggtttgaatt 8353046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 491 - 528
Target Start/End: Original strand, 8350237 - 8350274
Alignment:
Q  491 aatgaaatgaagatttaggtgtgacttgaaattgcagt 528  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  8350237 aatgaaatgaagatttaggtgtgacttaaaattgcagt 8350274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 321 - 380
Target Start/End: Original strand, 8360515 - 8360574
Alignment:
Q  321 gggaaataagaaactacaatcggagctccctttgatttttccttcctctttgatttctct 380  Q
    |||||||||| ||||||||| ||||||||  |||||||||||||  |||||| |||||||    
T  8360515 gggaaataagtaactacaattggagctcctattgatttttccttgatctttggtttctct 8360574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 89; Significance: 1e-42; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 44 - 168
Target Start/End: Complemental strand, 44799806 - 44799682
Alignment:
Q  44 cttaaatttctatgaagaactttatgaaggcttccatatggtaaatactcataaaccaaaaccagttcattcccttcacaacactgtcctttaagctgaa 143  Q
    |||||||| ||||| |||||||||| ||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||   |||||||||||||    
T  44799806 cttaaattcctatgcagaactttatcaaggcttccatttggtagatactcataaaccaaaaccaattcattcccttcacaacaccaccctttaagctgaa 44799707  T
Q  144 ccagattcttgtgccgcaagcaacc 168  Q
    |||||||||||||||||||||||||    
T  44799706 ccagattcttgtgccgcaagcaacc 44799682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University