View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5005_high_11 (Length: 312)
Name: NF5005_high_11
Description: NF5005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5005_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 119; Significance: 8e-61; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 67 - 200
Target Start/End: Complemental strand, 30652074 - 30651940
Alignment:
| Q |
67 |
aaaaccagagaccattcaatacaatagaaagagaaatcatatcatcttgcaaatagaactataa-taaacaaatagaaagatagtacaaatactttcaat |
165 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
30652074 |
aaaaccagagaccattcaatacaatagaaagagaaatcatatcatcttgcaaatagaactataattaaacaaatagaaagatagtacaaatactttcaat |
30651975 |
T |
|
| Q |
166 |
ataattttgtcaaagctgcaacattcagaattaca |
200 |
Q |
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|||| |||||||||||||||||||||| ||||||| |
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| T |
30651974 |
ataaatttgtcaaagctgcaacattcataattaca |
30651940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 202 - 312
Target Start/End: Complemental strand, 30651858 - 30651748
Alignment:
| Q |
202 |
gataaagtgatcctaataattgagaacaaaaactaactaatgatttattcctccatttttcttatagattattattttggaatatgctttttccacaccg |
301 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30651858 |
gataaaatgatcctaataattgagaacaaaaactaactaatgatttattcctccatttttcttatagattattattttggaatatgctttttccacaccg |
30651759 |
T |
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| Q |
302 |
tcaagtttctc |
312 |
Q |
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||||||||||| |
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| T |
30651758 |
tcaagtttctc |
30651748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 202 - 308
Target Start/End: Complemental strand, 31778204 - 31778098
Alignment:
| Q |
202 |
gataaagtgatcctaataattgagaacaaaaactaactaatgatttattcctccatttttcttatagattattattttggaatatgctttttccacaccg |
301 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
31778204 |
gataaaatgatcctaataattgagaacaaaaactaactaatgatctattcctccatttttcttatagattattatttcggaatatgctttttccacaccg |
31778105 |
T |
|
| Q |
302 |
tcaagtt |
308 |
Q |
| |
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||||||| |
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|
| T |
31778104 |
tcaagtt |
31778098 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 135 - 200
Target Start/End: Complemental strand, 31778353 - 31778288
Alignment:
| Q |
135 |
caaatagaaagatagtacaaatactttcaatataattttgtcaaagctgcaacattcagaattaca |
200 |
Q |
| |
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|||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| ||||||| |
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| T |
31778353 |
caaatagaaagacggtacaaatactttcaatataaaattgtcaaagctgcaacattcataattaca |
31778288 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 71; Significance: 4e-32; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 15 - 113
Target Start/End: Complemental strand, 25629982 - 25629884
Alignment:
| Q |
15 |
atatgtttatcattggataataaagttttccaaatatatgcaagttttacataaaaccagagaccattcaatacaatagaaagagaaatcatatcatct |
113 |
Q |
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|||||||| ||||||||| |||||||||||||||||||||| | |||||||||||||||||| ||| ||||||||| |||||||||||||||||||||| |
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| T |
25629982 |
atatgtttgtcattggattataaagttttccaaatatatgctatttttacataaaaccagaggccactcaatacaacagaaagagaaatcatatcatct |
25629884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 210 - 308
Target Start/End: Complemental strand, 25628478 - 25628377
Alignment:
| Q |
210 |
gatcctaataattgagaacaa---aaactaactaatgatttattcctccatttttcttatagattattattttggaatatgctttttccacaccgtcaag |
306 |
Q |
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|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| ||| | ||||||| || ||| ||||||||||| |
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| T |
25628478 |
gatcctaataattgagaacaacaaaaactaactaatgatttattcctccatttttcttatagaatataattcttgaatatgtttcttcaacaccgtcaag |
25628379 |
T |
|
| Q |
307 |
tt |
308 |
Q |
| |
|
|| |
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|
| T |
25628378 |
tt |
25628377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 135 - 200
Target Start/End: Complemental strand, 25629058 - 25628993
Alignment:
| Q |
135 |
caaatagaaagatagtacaaatactttcaatataattttgtcaaagctgcaacattcagaattaca |
200 |
Q |
| |
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|||||||||||||| |||||||||||| ||||||| | || |||||||||| ||||| ||||||| |
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| T |
25629058 |
caaatagaaagatattacaaatacttttaatataaaatggttaaagctgcaaaattcataattaca |
25628993 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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