View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5005_high_22 (Length: 223)

Name: NF5005_high_22
Description: NF5005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5005_high_22
NF5005_high_22
[»] chr5 (3 HSPs)
chr5 (26-223)||(30651571-30651768)
chr5 (26-223)||(31777917-31778114)
chr5 (23-88)||(42840518-42840583)
[»] chr7 (4 HSPs)
chr7 (26-219)||(25628196-25628389)
chr7 (20-100)||(30249803-30249883)
chr7 (41-81)||(5442395-5442435)
chr7 (41-81)||(5451405-5451445)
[»] chr2 (5 HSPs)
chr2 (20-153)||(29352379-29352512)
chr2 (22-99)||(34325309-34325387)
chr2 (33-85)||(44918494-44918546)
chr2 (23-85)||(44937805-44937867)
chr2 (20-89)||(7428985-7429054)
[»] chr8 (2 HSPs)
chr8 (22-157)||(4027903-4028038)
chr8 (41-85)||(12724914-12724958)
[»] chr6 (1 HSPs)
chr6 (42-101)||(1146409-1146468)
[»] chr4 (2 HSPs)
chr4 (23-84)||(48741994-48742055)
chr4 (50-89)||(4877827-4877866)
[»] scaffold0129 (1 HSPs)
scaffold0129 (41-99)||(33545-33603)


Alignment Details
Target: chr5 (Bit Score: 166; Significance: 5e-89; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 26 - 223
Target Start/End: Original strand, 30651571 - 30651768
Alignment:
Q  26 acctttgacatattaattttaggtgaacttggtgtgagtgaatcatggactaaactctttattaatggacctttgtccgacctttttacgtatcctactg 125  Q
    |||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||    
T  30651571 acctttcacatatcagttttaggtgaacttggtgtgagtgaatcatggactaaactctttattattggacctttgtccgacctttttacgtatcctattg 30651670  T
Q  126 gagcagggagtaatggtgatatattcttcaaagctggagatggaaaactagtctttgattaaaaaacacagatgattgagaaacttgacggtgtggaa 223  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||    
T  30651671 gagcagggagtaatggtgatatattcttcaaagcaggagatggaaaactagtctttgatttaagaacacagatgattgagaaacttgacggtgtggaa 30651768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 26 - 223
Target Start/End: Original strand, 31777917 - 31778114
Alignment:
Q  26 acctttgacatattaattttaggtgaacttggtgtgagtgaatcatggactaaactctttattaatggacctttgtccgacctttttacgtatcctactg 125  Q
    |||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| ||    
T  31777917 acctttcacatatcagttttaggtgaacttggtgtgagtgaatcatggactaaactctttattattggacctttgtccgaccttttaacgtatcctattg 31778016  T
Q  126 gagcagggagtaatggtgatatattcttcaaagctggagatggaaaactagtctttgattaaaaaacacagatgattgagaaacttgacggtgtggaa 223  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || |||||||||||||||| |||||||||||||||||    
T  31778017 gagcagggagtaatggtgatatattcttcaaagcaggagatggaaaactagtctttgatttaagaacacagatgattgaggaacttgacggtgtggaa 31778114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 88
Target Start/End: Complemental strand, 42840583 - 42840518
Alignment:
Q  23 actacctttgacatattaattttaggtgaacttggtgtgagtgaatcatggactaaactctttatt 88  Q
    ||||| ||| |||| | |||||| |||||||||||||| |  ||||||||||||||| ||||||||    
T  42840583 actacatttcacatttcaattttgggtgaacttggtgtaaaagaatcatggactaaagtctttatt 42840518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 146; Significance: 4e-77; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 26 - 219
Target Start/End: Original strand, 25628196 - 25628389
Alignment:
Q  26 acctttgacatattaattttaggtgaacttggtgtgagtgaatcatggactaaactctttattaatggacctttgtccgacctttttacgtatcctactg 125  Q
    |||||| |||||| | ||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||||||||||| |||||||| ||    
T  25628196 acctttcacatatcagttttaggtgaacttggtgtgagtgaatcatggactaaactcttcattattggacctttatccgacctttttatgtatcctattg 25628295  T
Q  126 gagcagggagtaatggtgatatattcttcaaagctggagatggaaaactagtctttgattaaaaaacacagatgattgagaaacttgacggtgt 219  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || |||||||||||||||| |||||||||||||    
T  25628296 gagcagggagtaatggtgatatattcttcaaagcaggagatggaaaactagtctttgatttaagaacacagatgattgaggaacttgacggtgt 25628389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 20 - 100
Target Start/End: Original strand, 30249803 - 30249883
Alignment:
Q  20 aagactacctttgacatattaattttaggtgaacttggtgtgagtgaatcatggactaaactctttattaatggacctttg 100  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | || ||||||||||    
T  30249803 aagactacctttgacatattaattttaggtgaacttggagtgagtgaatcatggactaaactcttcactattggacctttg 30249883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 81
Target Start/End: Original strand, 5442395 - 5442435
Alignment:
Q  41 attttaggtgaacttggtgtgagtgaatcatggactaaact 81  Q
    |||||||||||| |||||||||  |||||||||||||||||    
T  5442395 attttaggtgaaattggtgtgaaagaatcatggactaaact 5442435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 81
Target Start/End: Original strand, 5451405 - 5451445
Alignment:
Q  41 attttaggtgaacttggtgtgagtgaatcatggactaaact 81  Q
    |||||||||||| |||||||||  |||||||||||||||||    
T  5451405 attttaggtgaaattggtgtgaaagaatcatggactaaact 5451445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 70; Significance: 1e-31; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 20 - 153
Target Start/End: Complemental strand, 29352512 - 29352379
Alignment:
Q  20 aagactacctttgacatattaattttaggtgaacttggtgtgagtgaatcatggactaaactctttattaatggacctttgtccgacctttttacgtatc 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |||||||||| ||  |  | ||  | | |    
T  29352512 aagactacctttgacatattaattttaggtgaacttggtgtgagtgaatcatggactaaactcttcactattggacctttgccctcctatattcaggaac 29352413  T
Q  120 ctactggagcagggagtaatggtgatatattctt 153  Q
    ||| ||||| |||||| |||||||||||||||||    
T  29352412 ctattggagtagggaggaatggtgatatattctt 29352379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 22 - 99
Target Start/End: Original strand, 34325309 - 34325387
Alignment:
Q  22 gactacctttgacatattaattttaggtgaacttggtg-tgagtgaatcatggactaaactctttattaatggaccttt 99  Q
    |||||||||||||||||  ||||||||||||||||||| ||||||||||||||||||| ||||| | || |||||||||    
T  34325309 gactacctttgacatatcgattttaggtgaacttggtgttgagtgaatcatggactaagctcttcactattggaccttt 34325387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 85
Target Start/End: Complemental strand, 44918546 - 44918494
Alignment:
Q  33 acatattaattttaggtgaacttggtgtgagtgaatcatggactaaactcttt 85  Q
    |||||| |||||||||||||||||||| ||  ||||| |||||||||||||||    
T  44918546 acatatcaattttaggtgaacttggtgggaaagaatcgtggactaaactcttt 44918494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 85
Target Start/End: Complemental strand, 44937867 - 44937805
Alignment:
Q  23 actacctttgacatattaattttaggtgaacttggtgtgagtgaatcatggactaaactcttt 85  Q
    ||||| ||| |||||| |||||| |||||||| || ||||  |||||||||||||||||||||    
T  44937867 actacttttcacatatcaattttgggtgaactcggcgtgaaagaatcatggactaaactcttt 44937805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 89
Target Start/End: Complemental strand, 7429054 - 7428985
Alignment:
Q  20 aagactacctttgacatattaattttaggtgaacttggtgtgagtgaatcatggactaaactctttatta 89  Q
    |||||||| ||| |||||| | |||| |||||| | |||||||| | |||||||||||||||| ||||||    
T  7429054 aagactacttttcacatatcagttttgggtgaaatcggtgtgagaggatcatggactaaactcattatta 7428985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 9e-26; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 22 - 157
Target Start/End: Original strand, 4027903 - 4028038
Alignment:
Q  22 gactacctttgacatattaattttaggtgaacttggtgtgagtgaatcatggactaaactctttattaatggacctttgtccgacctttttacgtatcct 121  Q
    |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||| | || |||||||||  ||  |  | ||  |   |||    
T  4027903 gactacctttgacatatcgattttaggtgaacttggtgtgagtgaatcatggactaaactcttcactattggaccttttcccttctctattgagagacct 4028002  T
Q  122 actggagcagggagtaatggtgatatattcttcaaa 157  Q
    | |||||||||||| |||||||||||||||||||||    
T  4028003 attggagcagggaggaatggtgatatattcttcaaa 4028038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 85
Target Start/End: Original strand, 12724914 - 12724958
Alignment:
Q  41 attttaggtgaacttggtgtgagtgaatcatggactaaactcttt 85  Q
    ||||| ||||| |||| ||||| ||||||||||||||||||||||    
T  12724914 attttgggtgagcttgctgtgaatgaatcatggactaaactcttt 12724958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 101
Target Start/End: Original strand, 1146409 - 1146468
Alignment:
Q  42 ttttaggtgaacttggtgtgagtgaatcatggactaaactctttattaatggacctttgt 101  Q
    ||||||||||  ||||||||||||||| |||||||||||||||||||  ||||| |||||    
T  1146409 ttttaggtgagtttggtgtgagtgaattatggactaaactctttatttttggacatttgt 1146468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 84
Target Start/End: Complemental strand, 48742055 - 48741994
Alignment:
Q  23 actacctttgacatattaattttaggtgaacttggtgtgagtgaatcatggactaaactctt 84  Q
    |||||||||  ||||| ||||||||||||||| |||||||  ||||| ||||||||||||||    
T  48742055 actaccttttgcatatcaattttaggtgaactcggtgtgaaggaatcttggactaaactctt 48741994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 89
Target Start/End: Original strand, 4877827 - 4877866
Alignment:
Q  50 gaacttggtgtgagtgaatcatggactaaactctttatta 89  Q
    ||||||||||| || |||||||||||||||||||||||||    
T  4877827 gaacttggtgttagagaatcatggactaaactctttatta 4877866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 99
Target Start/End: Complemental strand, 33603 - 33545
Alignment:
Q  41 attttaggtgaacttggtgtgagtgaatcatggactaaactctttattaatggaccttt 99  Q
    ||||| ||||||||||||||||  || || ||||||||||||||||||| ||| |||||    
T  33603 attttgggtgaacttggtgtgaaggagtcttggactaaactctttattattgggccttt 33545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University