View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5005_high_3 (Length: 449)
Name: NF5005_high_3
Description: NF5005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5005_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 11 - 415
Target Start/End: Original strand, 45859774 - 45860176
Alignment:
| Q |
11 |
cagagaccatgcaagatactgcagaacaggnnnnnnnnnntactattgttttacttgaagttgtagccttgtaggacttgtaacatgcaaaaggatactg |
110 |
Q |
| |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45859774 |
cagagaccatgcaagatactgcagaacaggaagaaaaaaatactattgttttacttgaagttgtagccttgtaggacttgtaacatgcaaaaggatactg |
45859873 |
T |
|
| Q |
111 |
cgatgcaattttagagtgagaggaagaaaaacttacagtatctcgttcatgtataagaggtggcaatagggatggatatgaaaaactgagctgctcataa |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45859874 |
cgatgcaattttagagtgagaggaagaaaaacttacagtatctcgttcatgtataagaggtggcaatagggatggatatgaaaaactgagctgctcataa |
45859973 |
T |
|
| Q |
211 |
agctgaagtgtaccatcatctgaacttgctttctgcaactaacaccaagatttggttcttcagtttttcaaataactactactactactaaaccaaactg |
310 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
45859974 |
agctgaagtgtaccatcatttgaacttgctttctgcaactaacaccaagatttggttcttcagtttttcaaataacttatactactactaaaccaaactg |
45860073 |
T |
|
| Q |
311 |
ttgcatagattatatgagaatcatatatatatttatgcatctccctggttgagagttttatatataatatacaaatacacattgagtacctttattatgc |
410 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45860074 |
ttgcatagattatatgagaatc--atatatatttatgcatctccctggttgagagttttatatataatatacaaatacacattgagtacctttattatgc |
45860171 |
T |
|
| Q |
411 |
atctt |
415 |
Q |
| |
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||||| |
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| T |
45860172 |
atctt |
45860176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 79 - 415
Target Start/End: Original strand, 27003603 - 27003939
Alignment:
| Q |
79 |
ttgtaggacttgtaacatgcaaaaggatactgcgatgcaattttagagtgagaggaagaaaaacttacagtatctcgttcatgtataagaggtggcaata |
178 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27003603 |
ttgtaggacttgtcacatgcaaaaggatactgcgatggaatttttgagtgagaggaagaaaaacttacagtatctcgttcatgtataagaggtggcaata |
27003702 |
T |
|
| Q |
179 |
gggatggatatgaaaaactgagctgctcataaagctgaagtgtaccatcatctgaacttgctttctgcaactaacaccaagatttggttcttcagttttt |
278 |
Q |
| |
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||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| |||||| |||||||||||| |||| ||||||| |
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| T |
27003703 |
aggatggatatgaaaaactgagctgctcataaggctgaagtgtagcatcatctgaacttgctttctataactaataccaagatttggctctttagttttt |
27003802 |
T |
|
| Q |
279 |
caaataactactactactactaaaccaaactgttgcatagattatatgagaatcatatatatatttatgcatctccctggttgagagttttatatataat |
378 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||| |||||||||||||||| | ||||||||||||||||||||| |
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| T |
27003803 |
caaataactactactactactaaagcaaactgttgcatagattatatgcgaatc--atagatatttatgcatctccttagttgagagttttatatataat |
27003900 |
T |
|
| Q |
379 |
atacaaat--acacattgagtacctttattatgcatctt |
415 |
Q |
| |
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||||| || |||| |||||||| || |||||||||||| |
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|
| T |
27003901 |
atacatataaacactttgagtacattcattatgcatctt |
27003939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 11 - 39
Target Start/End: Original strand, 27003548 - 27003576
Alignment:
| Q |
11 |
cagagaccatgcaagatactgcagaacag |
39 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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|
| T |
27003548 |
cagagaccatgcaagatactgcagaacag |
27003576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 79 - 415
Target Start/End: Complemental strand, 35537634 - 35537304
Alignment:
| Q |
79 |
ttgtaggacttgtaacatgcaaaaggatactgcgatgcaattttagagtgagaggaagaaaaacttacagtatctcgttcatgtataagaggtggcaata |
178 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35537634 |
ttgtaggacttgtcacatgcaaaaggatactgcgatggaatttttgagtgagaggaagaaaaacttacagtatctcgttcatgtataagaggtggcaata |
35537535 |
T |
|
| Q |
179 |
gggatggatatgaaaaactgagctgctcataaagctgaagtgtaccatcatctgaacttgctttctgcaactaacaccaagatttggttcttcagttttt |
278 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| |||||| |||||||||||| |||| ||||||| |
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| T |
35537534 |
aggatggatatgaaaaactgagctgctcataaggctgaagtgtagcatcatctgaacttgctttctataactaataccaagatttggctctttagttttt |
35537435 |
T |
|
| Q |
279 |
caaataactactactactactaaaccaaactgttgcatagattatatgagaatcatatatatatttatgcatctccctggttgagagttttatatataat |
378 |
Q |
| |
|
|||||||||||| |||||| ||||||||||||||||||||||| ||||| ||| |||||||||||||||| | ||||||||||||||||||||| |
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| T |
35537434 |
caaataactact------actaaagcaaactgttgcatagattatatgcgaatc--atagatatttatgcatctccttagttgagagttttatatataat |
35537343 |
T |
|
| Q |
379 |
atacaaat--acacattgagtacctttattatgcatctt |
415 |
Q |
| |
|
||||| || |||| |||||||| || |||||||||||| |
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|
| T |
35537342 |
atacatataaacactttgagtacattcattatgcatctt |
35537304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 11 - 39
Target Start/End: Complemental strand, 35537689 - 35537661
Alignment:
| Q |
11 |
cagagaccatgcaagatactgcagaacag |
39 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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|
| T |
35537689 |
cagagaccatgcaagatactgcagaacag |
35537661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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