View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5005_high_6 (Length: 414)
Name: NF5005_high_6
Description: NF5005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5005_high_6 |
 | |
|
| [»] scaffold0115 (2 HSPs) |
| | |
|
| [»] scaffold0006 (8 HSPs) |
| | |
|
| [»] scaffold0069 (1 HSPs) |
| | |
|
| [»] scaffold0068 (2 HSPs) |
| | |
|
| [»] scaffold0406 (2 HSPs) |
| | |
|
| [»] scaffold0012 (4 HSPs) |
| | |
|
Alignment Details
Target: scaffold0115 (Bit Score: 377; Significance: 0; HSPs: 2)
Name: scaffold0115
Description:
Target: scaffold0115; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 16 - 408
Target Start/End: Complemental strand, 5353 - 4961
Alignment:
| Q |
16 |
aggttcgactctccaaattagaggaaatcatattgaatgacatggagaacttgaaaacaatatggcaccaccagtttgactcattgaagacgttgaaagt |
115 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
5353 |
aggttcgactatccaaattagaggaaatcatattgaatgacatggagaacttgaaaacaatatggcaccatcagtttgactcattgaagacgttgaaagt |
5254 |
T |
|
| Q |
116 |
gaataaatgtgacaaaatcacagcagtttttccttcttcattgtaaaaaacatacaataatctagagatgctagatattacaaattgtgcttcagtggaa |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5253 |
gaataaatgtgacaaaatcacagcagtttttccttcttcattgtaaaaaacatacaataatctagagatgctagatattacaaattgtgcttcagtggaa |
5154 |
T |
|
| Q |
216 |
gagatatttgattccaatgaaaaggggaagtaaagaggatgcaacaaatctgaaagaaatcactttgagtgaaatgccaaagctgaaaaatatatgtagt |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5153 |
gagatatttgattccaatgaaaaggggaagtaaagaggatgcaacaaatctgaaagaaatcactttgagtgaaatgccaaagctgaaaaatatatgtagt |
5054 |
T |
|
| Q |
316 |
gtggatcctcaagggattcttagttttcataatctagaaaatgtatctcttgtaaattgtggaagcatagattatctgtttacgctttctgtg |
408 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
5053 |
gtggatcctcaaaggattcttagttttcataatctagaaaatgtatctcttgtaaattgtggaagcatagattatctgtttccgctttctgtg |
4961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0115; HSP #2
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 16 - 408
Target Start/End: Complemental strand, 13093 - 12701
Alignment:
| Q |
16 |
aggttcgactctccaaattagaggaaatcatattgaatgacatggagaacttgaaaacaatatggcaccaccagtttgactcattgaagacgttgaaagt |
115 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
13093 |
aggttcgactatccaaattagaggaaatcatattgaatgacatggagaacttgaaaacaatatggcaccatcagtttgactcattgaagacgttgaaagt |
12994 |
T |
|
| Q |
116 |
gaataaatgtgacaaaatcacagcagtttttccttcttcattgtaaaaaacatacaataatctagagatgctagatattacaaattgtgcttcagtggaa |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12993 |
gaataaatgtgacaaaatcacagcagtttttccttcttcattgtaaaaaacatacaataatctagagatgctagatattacaaattgtgcttcagtggaa |
12894 |
T |
|
| Q |
216 |
gagatatttgattccaatgaaaaggggaagtaaagaggatgcaacaaatctgaaagaaatcactttgagtgaaatgccaaagctgaaaaatatatgtagt |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12893 |
gagatatttgattccaatgaaaaggggaagtaaagaggatgcaacaaatctgaaagaaatcactttgagtgaaatgccaaagctgaaaaatatatgtagt |
12794 |
T |
|
| Q |
316 |
gtggatcctcaagggattcttagttttcataatctagaaaatgtatctcttgtaaattgtggaagcatagattatctgtttacgctttctgtg |
408 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
12793 |
gtggatcctcaaaggattcttagttttcataatctagaaaatgtatctcttgtaaattgtggaagcatagattatctgtttccgctttctgtg |
12701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 268; Significance: 1e-149; HSPs: 16)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 16 - 360
Target Start/End: Complemental strand, 19344877 - 19344528
Alignment:
| Q |
16 |
aggttcgactctccaaattagaggaaatcatattgaatgacatggagaacttgaaaacaatatggcaccaccagtttgactcattgaagacgttgaaagt |
115 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
19344877 |
aggttcgattctccaaattagaggaaatcatattgaatgacatggagaacttgaagacaatatggcaccgccagtttgactcattgaagacgttgaaagt |
19344778 |
T |
|
| Q |
116 |
gaataaatgtgacaaaatcacagcagtttttccttcttcattgtaaaaaacatacaataatctagagatgctagatattacaaattgtgcttcagtggaa |
215 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| || |
|
|
| T |
19344777 |
gaataaatgtgacaaaatcacagtagtttttccttcttcattgcaaaaaacatacaataatctagagatgctagatattacaaactgtgcttcagtgaaa |
19344678 |
T |
|
| Q |
216 |
gagatatttg------attccaatgaaaaggggaagtaaagaggatgcaacaaatctgaaagaaatcactttgagtgaaatgccaaagctgaaaaatata |
309 |
Q |
| |
|
|||||||||| |||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |
|
|
| T |
19344677 |
gagatatttgaattgaattccactgaaaa-gggaagtaaagaggatgcaacaaatctgaaagaaatcactttgagtaaaatgccaaagctaaaaaatata |
19344579 |
T |
|
| Q |
310 |
tgtagtgtggatcctcaagggattcttagttttcataatctagaaaatgta |
360 |
Q |
| |
|
|| | | |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19344578 |
tggactatggatcctcaagggattcttagttttcataatctagaaaatgta |
19344528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 30 - 226
Target Start/End: Original strand, 13543394 - 13543590
Alignment:
| Q |
30 |
aaattagaggaaatcatattgaatgacatggagaacttgaaaacaatatggcaccaccagtttgactcattgaagacgttgaaagtgaataaatgtgaca |
129 |
Q |
| |
|
||||||||| ||||||||||||| || ||||| |||||||| ||||||||||| ||||| ||||| ||| |||| |||| ||||||| || ||| | | |
|
|
| T |
13543394 |
aaattagagaaaatcatattgaaggatatggacaacttgaagacaatatggcatcaccaatttgaaacatcaaagatgttggaagtgaacaattgtaaga |
13543493 |
T |
|
| Q |
130 |
aaatcacagcagtttttccttcttcattgtaaaaaacatacaataatctagagatgctagatattacaaattgtgcttcagtggaagagatatttga |
226 |
Q |
| |
|
|||| | ||||||||||||||| || | || ||||| ||||| || |||| | | || |||||||||||| |||||| |||||||||||||| |
|
|
| T |
13543494 |
aaattgtggtggtttttccttcttcaatgcagaacacatataataagcttgagaagttggaggttacaaattgtgtttcagttgaagagatatttga |
13543590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 30 - 226
Target Start/End: Original strand, 13670554 - 13670750
Alignment:
| Q |
30 |
aaattagaggaaatcatattgaatgacatggagaacttgaaaacaatatggcaccaccagtttgactcattgaagacgttgaaagtgaataaatgtgaca |
129 |
Q |
| |
|
||||||||| ||||||||||||| || ||||| | |||||| ||||||||||| || || ||||| ||| ||||| |||||||||||| || ||| | | |
|
|
| T |
13670554 |
aaattagagaaaatcatattgaaggatatggacagcttgaagacaatatggcatcagcaatttgaaacatcgaagatgttgaaagtgaacaattgtaaga |
13670653 |
T |
|
| Q |
130 |
aaatcacagcagtttttccttcttcattgtaaaaaacatacaataatctagagatgctagatattacaaattgtgcttcagtggaagagatatttga |
226 |
Q |
| |
|
|||| | ||||||||||||||| || |||| ||||||||| | ||||||| | | || ||| |||||||| || ||| |||||||||||||| |
|
|
| T |
13670654 |
aaattgtggttgtttttccttcttcaatgcaaaacacatacaatgagctagagaagttggaggttagaaattgtgatttagttgaagagatatttga |
13670750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 30 - 226
Target Start/End: Complemental strand, 15899262 - 15899066
Alignment:
| Q |
30 |
aaattagaggaaatcatattgaatgacatggagaacttgaaaacaatatggcaccaccagtttgactcattgaagacgttgaaagtgaataaatgtgaca |
129 |
Q |
| |
|
||||||||| ||||||||||||| || ||||| |||||||| ||| ||||||| ||||| ||| | ||||||||| |||| ||||||| || ||| | | |
|
|
| T |
15899262 |
aaattagagaaaatcatattgaaggatatggacaacttgaagacagtatggcatcaccaatttaaaacattgaagatgttggaagtgaacaattgtaaga |
15899163 |
T |
|
| Q |
130 |
aaatcacagcagtttttccttcttcattgtaaaaaacatacaataatctagagatgctagatattacaaattgtgcttcagtggaagagatatttga |
226 |
Q |
| |
|
|||| | ||||||||||||||| || |||| ||||| ||| | || |||||| | || ||| ||||||||||||||| ||||| |||||||| |
|
|
| T |
15899162 |
aaattgtggtggtttttccttcttcaatgcaaaacacatataatgagcttgagatgttggaggttagaaattgtgcttcagttgaagaaatatttga |
15899066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 30 - 118
Target Start/End: Original strand, 13420896 - 13420984
Alignment:
| Q |
30 |
aaattagaggaaatcatattgaatgacatggagaacttgaaaacaatatggcaccaccagtttgactcattgaagacgttgaaagtgaa |
118 |
Q |
| |
|
||||||||| ||||||||||||| || ||||| |||||||| ||||||||||| ||||| ||||| ||||||||| |||| ||||||| |
|
|
| T |
13420896 |
aaattagagaaaatcatattgaaggatatggacaacttgaagacaatatggcatcaccaatttgaaacattgaagatgttggaagtgaa |
13420984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 30 - 223
Target Start/End: Original strand, 13655150 - 13655343
Alignment:
| Q |
30 |
aaattagaggaaatcatattgaatgacatggagaacttgaaaacaatatggcaccaccagtttgactcattgaagacgttgaaagtgaataaatgtgaca |
129 |
Q |
| |
|
||||||||| |||| ||| |||| || ||||| |||||||| |||||||||||||||| ||||| ||||||||| |||| ||||||| || ||| | | |
|
|
| T |
13655150 |
aaattagagaaaattatactgaaggatatggacaacttgaagtcaatatggcaccaccaatttgaaacattgaagatgttggaagtgaacaattgtaaga |
13655249 |
T |
|
| Q |
130 |
aaatcacagcagtttttccttcttcattgtaaaaaacatacaataatctagagatgctagatattacaaattgtgcttcagtggaagagatatt |
223 |
Q |
| |
|
|||| | ||||||||||||||| || |||| ||||| ||| | ||||||| | | || | ||||| ||||||| ||| ||||||||||| |
|
|
| T |
13655250 |
aaattgtggtggtttttccttcttcaatgcaaaacacatataatgagctagagaagttggaggtcacaaactgtgctttagttgaagagatatt |
13655343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 40 - 226
Target Start/End: Original strand, 13684810 - 13684996
Alignment:
| Q |
40 |
aaatcatattgaatgacatggagaacttgaaaacaatatggcaccaccagtttgactcattgaagacgttgaaagtgaataaatgtgacaaaatcacagc |
139 |
Q |
| |
|
||||||||||||| || ||| | |||||||| ||||||||||| | ||| ||||| |||||||| |||| ||||||| || ||| | ||||| | |
|
|
| T |
13684810 |
aaatcatattgaaggatatgaacaacttgaagacaatatggcatcgccaatttgaaatattgaagatgttggaagtgaacaattgtaagaaaattgtggt |
13684909 |
T |
|
| Q |
140 |
agtttttccttcttcattgtaaaaaacatacaataatctagagatgctagatattacaaattgtgcttcagtggaagagatatttga |
226 |
Q |
| |
|
||||||||||||||| || |||| ||||| ||| | || |||| | | || ||||||||||||||| ||| |||||||||||||| |
|
|
| T |
13684910 |
ggtttttccttcttcaatgcaaaacacatataatgagcttgagaagttggaggttacaaattgtgctttagttgaagagatatttga |
13684996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 30 - 226
Target Start/End: Original strand, 20477522 - 20477718
Alignment:
| Q |
30 |
aaattagaggaaatcatattgaatgacatggagaacttgaaaacaatatggcaccaccagtttgactcattgaagacgttgaaagtgaataaatgtgaca |
129 |
Q |
| |
|
||||||||| ||||||||||||| || ||||| | |||||| ||||||||||| | || ||||| ||| ||||| |||| ||||||| || ||| | | |
|
|
| T |
20477522 |
aaattagagaaaatcatattgaaggatatggacagcttgaagacaatatggcatcggcaatttgaaacatcgaagatgttggaagtgaacaattgtaaga |
20477621 |
T |
|
| Q |
130 |
aaatcacagcagtttttccttcttcattgtaaaaaacatacaataatctagagatgctagatattacaaattgtgcttcagtggaagagatatttga |
226 |
Q |
| |
|
|||| | ||||||||||||||| || |||| ||||| ||| | || |||| | | || ||| ||||||||||| ||| |||||||||||||| |
|
|
| T |
20477622 |
aaattgtggtggtttttccttcttcaatgcaaaacacatataatgagcttgagaagttggaggttagaaattgtgctttagttgaagagatatttga |
20477718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 40 - 226
Target Start/End: Original strand, 13650088 - 13650274
Alignment:
| Q |
40 |
aaatcatattgaatgacatggagaacttgaaaacaatatggcaccaccagtttgactcattgaagacgttgaaagtgaataaatgtgacaaaatcacagc |
139 |
Q |
| |
|
||||||||||||| || ||||| | |||||| ||||||||||| |||| ||||| ||| |||| |||| ||||||| || ||| | ||||| | |
|
|
| T |
13650088 |
aaatcatattgaaggatatggacagcttgaagacaatatggcattaccaatttgaaacatccaagatgttggaagtgaacaattgtaagaaaattgtggt |
13650187 |
T |
|
| Q |
140 |
agtttttccttcttcattgtaaaaaacatacaataatctagagatgctagatattacaaattgtgcttcagtggaagagatatttga |
226 |
Q |
| |
|
||||||||||||||| || |||| ||||| ||| | || |||| | | || ||||||||||||||| ||| |||||||||||||| |
|
|
| T |
13650188 |
ggtttttccttcttcaatgcaaaatacatataatgagcttgagaagttggaggttacaaattgtgctttagttgaagagatatttga |
13650274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 29 - 94
Target Start/End: Complemental strand, 16497209 - 16497144
Alignment:
| Q |
29 |
caaattagaggaaatcatattgaatgacatggagaacttgaaaacaatatggcaccaccagtttga |
94 |
Q |
| |
|
|||||| ||| ||||||||||||| |||||||| |||||||| ||||||||| |||| || ||||| |
|
|
| T |
16497209 |
caaattggagaaaatcatattgaaggacatggacaacttgaagacaatatggtaccatcaatttga |
16497144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 360
Target Start/End: Original strand, 13670828 - 13670889
Alignment:
| Q |
299 |
tgaaaaatatatgtagtgtggatcctcaagggattcttagttttcataatctagaaaatgta |
360 |
Q |
| |
|
||||||| ||||| |||| ||||||||||| |||||||||||||| |||||| ||||||| |
|
|
| T |
13670828 |
tgaaaaagatatggagtgaagatcctcaaggaattcttagttttcaaaatctaataaatgta |
13670889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 360
Target Start/End: Complemental strand, 19138098 - 19138033
Alignment:
| Q |
295 |
aagctgaaaaatatatgtagtgtggatcctcaagggattcttagttttcataatctagaaaatgta |
360 |
Q |
| |
|
||||||||||| ||||| ||| ||||||||||| |||||||||||||| |||||| ||||||| |
|
|
| T |
19138098 |
aagctgaaaaagatatggagtagagatcctcaaggaattcttagttttcaaaatctaataaatgta |
19138033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 299 - 351
Target Start/End: Original strand, 13655424 - 13655476
Alignment:
| Q |
299 |
tgaaaaatatatgtagtgtggatcctcaagggattcttagttttcataatcta |
351 |
Q |
| |
|
||||||| ||||| |||| ||||||||||| |||||||||||||| |||||| |
|
|
| T |
13655424 |
tgaaaaagatatggagtggagatcctcaaggaattcttagttttcaaaatcta |
13655476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 295 - 351
Target Start/End: Original strand, 13685070 - 13685126
Alignment:
| Q |
295 |
aagctgaaaaatatatgtagtgtggatcctcaagggattcttagttttcataatcta |
351 |
Q |
| |
|
||||||||||| ||||| |||| |||||| |||| |||||||||||||| |||||| |
|
|
| T |
13685070 |
aagctgaaaaagatatggagtggagatcctgaaggaattcttagttttcaaaatcta |
13685126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 295 - 351
Target Start/End: Complemental strand, 15898992 - 15898936
Alignment:
| Q |
295 |
aagctgaaaaatatatgtagtgtggatcctcaagggattcttagttttcataatcta |
351 |
Q |
| |
|
|||||||| || ||||| |||| ||||||||||| |||||||||||||| |||||| |
|
|
| T |
15898992 |
aagctgaacaagatatggagtggagatcctcaaggaattcttagttttcaaaatcta |
15898936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 299 - 351
Target Start/End: Original strand, 20477796 - 20477848
Alignment:
| Q |
299 |
tgaaaaatatatgtagtgtggatcctcaagggattcttagttttcataatcta |
351 |
Q |
| |
|
||||||| ||||| |||| ||||||||||| |||||||||||||| |||||| |
|
|
| T |
20477796 |
tgaaaaagatatggagtggagatcctcaaggaattcttagttttcaaaatcta |
20477848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 16 - 219
Target Start/End: Complemental strand, 8480223 - 8480020
Alignment:
| Q |
16 |
aggttcgactctccaaattagaggaaatcatattgaatgacatggagaacttgaaaacaatatggcaccaccagtttgactcattgaagacgttgaaagt |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8480223 |
aggttcgactctccaaattagaggaaatcatattgaatgacatggagaacttgaagacaatatggcaccaccagtttgactcattgaagacgttgaaagt |
8480124 |
T |
|
| Q |
116 |
gaataaatgtgacaaaatcacagcagtttttccttcttcattgtaaaaaacatacaataatctagagatgctagatattacaaattgtgcttcagtggaa |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
8480123 |
gaataaatgtgacaaaatcacagcagtttttccttcttcattgtaaaaaacatacaataatctagagatgctaaatattacaaattgtgcttcagtggag |
8480024 |
T |
|
| Q |
216 |
gaga |
219 |
Q |
| |
|
|||| |
|
|
| T |
8480023 |
gaga |
8480020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 229 - 305
Target Start/End: Complemental strand, 328240 - 328164
Alignment:
| Q |
229 |
ccaatgaaaaggggaagtaaagaggatgcaacaaatctgaaagaaatcactttgagtgaaatgccaaagctgaaaaa |
305 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |
|
|
| T |
328240 |
ccaatgaaaagggtaagtaaagaggatgcaacaaatctgaattaaatcactttgactgaaatgccaaagctgaaaaa |
328164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006 (Bit Score: 49; Significance: 7e-19; HSPs: 8)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 30 - 226
Target Start/End: Original strand, 168168 - 168364
Alignment:
| Q |
30 |
aaattagaggaaatcatattgaatgacatggagaacttgaaaacaatatggcaccaccagtttgactcattgaagacgttgaaagtgaataaatgtgaca |
129 |
Q |
| |
|
||||||||| ||||||||||||| || ||||| | |||||| ||||||||||| || || ||||| ||| ||||| |||||||||||| || ||| | | |
|
|
| T |
168168 |
aaattagagaaaatcatattgaaggatatggacagcttgaagacaatatggcatcagcaatttgaaacatcgaagatgttgaaagtgaacaattgtaaga |
168267 |
T |
|
| Q |
130 |
aaatcacagcagtttttccttcttcattgtaaaaaacatacaataatctagagatgctagatattacaaattgtgcttcagtggaagagatatttga |
226 |
Q |
| |
|
|||| | ||||||||||||||| || |||| ||||||||| | ||||||| | | || ||| |||||||| || ||| |||||||||||||| |
|
|
| T |
168268 |
aaattgtggttgtttttccttcttcaatgcaaaacacatacaatgagctagagaagttggaggttagaaattgtgatttagttgaagagatatttga |
168364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 30 - 223
Target Start/End: Original strand, 144911 - 145104
Alignment:
| Q |
30 |
aaattagaggaaatcatattgaatgacatggagaacttgaaaacaatatggcaccaccagtttgactcattgaagacgttgaaagtgaataaatgtgaca |
129 |
Q |
| |
|
||||||||| |||| ||| |||| || ||||| |||||||| |||||||||||||||| ||||| ||||||||| |||| ||||||| || ||| | | |
|
|
| T |
144911 |
aaattagagaaaattatactgaaggatatggacaacttgaagtcaatatggcaccaccaatttgaaacattgaagatgttggaagtgaacaattgtaaga |
145010 |
T |
|
| Q |
130 |
aaatcacagcagtttttccttcttcattgtaaaaaacatacaataatctagagatgctagatattacaaattgtgcttcagtggaagagatatt |
223 |
Q |
| |
|
|||| | ||||||||||||||| || |||| ||||| ||| | ||||||| | | || | ||||| ||||||| ||| ||||||||||| |
|
|
| T |
145011 |
aaattgtggtggtttttccttcttcaatgcaaaacacatataatgagctagagaagttggaggtcacaaactgtgctttagttgaagagatatt |
145104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 30 - 226
Target Start/End: Original strand, 218759 - 218955
Alignment:
| Q |
30 |
aaattagaggaaatcatattgaatgacatggagaacttgaaaacaatatggcaccaccagtttgactcattgaagacgttgaaagtgaataaatgtgaca |
129 |
Q |
| |
|
||||||||| |||| |||||||| || ||||| | |||||| ||||||||||| ||||| ||||| ||| ||||| |||| ||| ||| || ||| ||| |
|
|
| T |
218759 |
aaattagagaaaattatattgaaggatatggacagcttgaagacaatatggcatcaccaatttgaaacatcgaagatgttggaagcgaacaattgtaaca |
218858 |
T |
|
| Q |
130 |
aaatcacagcagtttttccttcttcattgtaaaaaacatacaataatctagagatgctagatattacaaattgtgcttcagtggaagagatatttga |
226 |
Q |
| |
|
|||| | ||||||||||||||| || |||| ||||| ||| | || |||| | | || ||| |||||||| || ||| |||||||||||||| |
|
|
| T |
218859 |
aaattgtggtggtttttccttcttcaatgcaaaacacatataatgagcttgagaagttggaggttagaaattgtgatttagttgaagagatatttga |
218955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 118
Target Start/End: Original strand, 109919 - 110007
Alignment:
| Q |
30 |
aaattagaggaaatcatattgaatgacatggagaacttgaaaacaatatggcaccaccagtttgactcattgaagacgttgaaagtgaa |
118 |
Q |
| |
|
||||||||| |||||||||| || || ||||| | |||||| ||||||||||| ||||| ||||| ||| ||||| |||| ||||||| |
|
|
| T |
109919 |
aaattagagaaaatcatatttaaggatatggacatcttgaagacaatatggcatcaccaatttgaaacatcgaagatgttggaagtgaa |
110007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 360
Target Start/End: Original strand, 110193 - 110254
Alignment:
| Q |
299 |
tgaaaaatatatgtagtgtggatcctcaagggattcttagttttcataatctagaaaatgta |
360 |
Q |
| |
|
||||||| ||||| |||| ||||||||||| |||||||||||||| |||||| ||||||| |
|
|
| T |
110193 |
tgaaaaagatatggagtggagatcctcaaggaattcttagttttcaaaatctaataaatgta |
110254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 360
Target Start/End: Original strand, 168442 - 168503
Alignment:
| Q |
299 |
tgaaaaatatatgtagtgtggatcctcaagggattcttagttttcataatctagaaaatgta |
360 |
Q |
| |
|
||||||| ||||| |||| ||||||||||| |||||||||||||| |||||| ||||||| |
|
|
| T |
168442 |
tgaaaaagatatggagtgaagatcctcaaggaattcttagttttcaaaatctaataaatgta |
168503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 360
Target Start/End: Original strand, 219033 - 219094
Alignment:
| Q |
299 |
tgaaaaatatatgtagtgtggatcctcaagggattcttagttttcataatctagaaaatgta |
360 |
Q |
| |
|
||||||| ||||| |||| ||||||||||| |||||||||||||| |||||| ||||||| |
|
|
| T |
219033 |
tgaaaaagatatggagtgcagatcctcaaggaattcttagttttcaaaatctaataaatgta |
219094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 299 - 351
Target Start/End: Original strand, 145185 - 145237
Alignment:
| Q |
299 |
tgaaaaatatatgtagtgtggatcctcaagggattcttagttttcataatcta |
351 |
Q |
| |
|
||||||| ||||| |||| ||||||||||| |||||||||||||| |||||| |
|
|
| T |
145185 |
tgaaaaagatatggagtggagatcctcaaggaattcttagttttcaaaatcta |
145237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0069 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0069
Description:
Target: scaffold0069; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 30 - 226
Target Start/End: Original strand, 26548 - 26744
Alignment:
| Q |
30 |
aaattagaggaaatcatattgaatgacatggagaacttgaaaacaatatggcaccaccagtttgactcattgaagacgttgaaagtgaataaatgtgaca |
129 |
Q |
| |
|
||||||||| ||||||||||||| || ||||| | |||||| ||||||||||| |||| ||||| ||| ||||| |||| ||||||| || ||| | | |
|
|
| T |
26548 |
aaattagagaaaatcatattgaaggatatggacagcttgaagacaatatggcattaccaatttgaaacatcgaagatgttggaagtgaacaattgtaaga |
26647 |
T |
|
| Q |
130 |
aaatcacagcagtttttccttcttcattgtaaaaaacatacaataatctagagatgctagatattacaaattgtgcttcagtggaagagatatttga |
226 |
Q |
| |
|
|||| | ||||||||||||||| || |||| ||||| ||| | || |||| | | || ||||||||||||||| ||| |||||||||||||| |
|
|
| T |
26648 |
aaattgtggtggtttttccttcttcaatgcaaaatacatataatgagcttgagaagttggaggttacaaattgtgctttagttgaagagatatttga |
26744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 30 - 226
Target Start/End: Complemental strand, 22284114 - 22283918
Alignment:
| Q |
30 |
aaattagaggaaatcatattgaatgacatggagaacttgaaaacaatatggcaccaccagtttgactcattgaagacgttgaaagtgaataaatgtgaca |
129 |
Q |
| |
|
||||||||| ||||| || |||| || ||||| |||||||| ||||||||||| | ||| ||| | ||||||||| |||| ||||||| || ||| | | |
|
|
| T |
22284114 |
aaattagagaaaatcttactgaaggatatggacaacttgaagacaatatggcatccccaatttaaaacattgaagatgttggaagtgaacaattgtaaga |
22284015 |
T |
|
| Q |
130 |
aaatcacagcagtttttccttcttcattgtaaaaaacatacaataatctagagatgctagatattacaaattgtgcttcagtggaagagatatttga |
226 |
Q |
| |
|
|||| | ||||||||||||||| || |||| ||||| ||| |||| |||| | | || ||||||||||||||| ||| |||||||||||||| |
|
|
| T |
22284014 |
aaattgtggttgtttttccttcttcagtgcaaaacacatataatgatcttgagaagttggaggttacaaattgtgctttagttgaagagatatttga |
22283918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 302 - 350
Target Start/End: Original strand, 21814714 - 21814762
Alignment:
| Q |
302 |
aaaatatatgtagtgtggatcctcaagggattcttagttttcataatct |
350 |
Q |
| |
|
|||| ||||| |||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
21814714 |
aaaagatatggagtgaagatcctcaagggattcttagttttcaaaatct |
21814762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0068 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: scaffold0068
Description:
Target: scaffold0068; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 30 - 226
Target Start/End: Complemental strand, 41054 - 40858
Alignment:
| Q |
30 |
aaattagaggaaatcatattgaatgacatggagaacttgaaaacaatatggcaccaccagtttgactcattgaagacgttgaaagtgaataaatgtgaca |
129 |
Q |
| |
|
||||||||| |||||||| |||| || ||| | |||||||| ||||||||||| ||||| ||||| ||||||||| ||| ||||||| || ||| | | |
|
|
| T |
41054 |
aaattagagaaaatcatactgaaggatatgaacaacttgaagacaatatggcatcaccaatttgaaacattgaagattttggaagtgaacaattgtaaga |
40955 |
T |
|
| Q |
130 |
aaatcacagcagtttttccttcttcattgtaaaaaacatacaataatctagagatgctagatattacaaattgtgcttcagtggaagagatatttga |
226 |
Q |
| |
|
|||| | ||||||||||||||| || |||| ||||||||| | || |||| | | || |||||||||||| || ||| ||| |||||||||| |
|
|
| T |
40954 |
aaattgtggtggtttttccttcttcagtgcaaaacacatacaatgagcttgagaagttggaggttacaaattgtgatttagttgaacagatatttga |
40858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0068; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 298 - 360
Target Start/End: Complemental strand, 40781 - 40719
Alignment:
| Q |
298 |
ctgaaaaatatatgtagtgtggatcctcaagggattcttagttttcataatctagaaaatgta |
360 |
Q |
| |
|
|||||||| ||||| |||| ||||||||||| |||||||||||||| |||||| ||||||| |
|
|
| T |
40781 |
ctgaaaaagatatggagtggagatcctcaaggaattcttagttttcaaaatctaataaatgta |
40719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 30 - 226
Target Start/End: Complemental strand, 38057907 - 38057711
Alignment:
| Q |
30 |
aaattagaggaaatcatattgaatgacatggagaacttgaaaacaatatggcaccaccagtttgactcattgaagacgttgaaagtgaataaatgtgaca |
129 |
Q |
| |
|
|||||||| ||||||||||||| || ||||| |||||||| ||||||||||| |||| ||| | ||||||||| |||| ||||||| || || | | |
|
|
| T |
38057907 |
aaattagaaaaaatcatattgaaggatatggacaacttgaagacaatatggcattaccaatttaaaacattgaagatgttgcaagtgaacaattgcaaga |
38057808 |
T |
|
| Q |
130 |
aaatcacagcagtttttccttcttcattgtaaaaaacatacaataatctagagatgctagatattacaaattgtgcttcagtggaagagatatttga |
226 |
Q |
| |
|
|||| | |||||||||||||||||| |||||||||| | | | ||||| | | | || ||| ||||||||||| ||| |||||||||||||| |
|
|
| T |
38057807 |
aaattgtggtggtttttccttcttcattgcaaaaaacatatattgagctagaaaagttggaggttagaaattgtgctttagttgaagagatatttga |
38057711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0406 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: scaffold0406
Description:
Target: scaffold0406; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 30 - 118
Target Start/End: Complemental strand, 7887 - 7799
Alignment:
| Q |
30 |
aaattagaggaaatcatattgaatgacatggagaacttgaaaacaatatggcaccaccagtttgactcattgaagacgttgaaagtgaa |
118 |
Q |
| |
|
||||||||| |||||||| |||| || ||||| |||||||| ||||||||||| ||||| ||||| ||| ||||| |||| ||||||| |
|
|
| T |
7887 |
aaattagagaaaatcatactgaaggatatggacaacttgaagacaatatggcatcaccaatttgaaacatcgaagatgttggaagtgaa |
7799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0406; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 299 - 360
Target Start/End: Complemental strand, 7615 - 7554
Alignment:
| Q |
299 |
tgaaaaatatatgtagtgtggatcctcaagggattcttagttttcataatctagaaaatgta |
360 |
Q |
| |
|
||||||| ||||| |||| |||||||||||||||||||||||||| |||||| ||||||| |
|
|
| T |
7615 |
tgaaaaagatatggagtgaagatcctcaagggattcttagttttcaaaatctaataaatgta |
7554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 30 - 226
Target Start/End: Complemental strand, 20814871 - 20814675
Alignment:
| Q |
30 |
aaattagaggaaatcatattgaatgacatggagaacttgaaaacaatatggcaccaccagtttgactcattgaagacgttgaaagtgaataaatgtgaca |
129 |
Q |
| |
|
||||||||| |||||||| |||| || ||||| | |||||| ||||||||||| |||| ||||| ||| ||||| |||| ||||||| || ||| | | |
|
|
| T |
20814871 |
aaattagagaaaatcatactgaaggatatggacagcttgaagacaatatggcattaccaatttgaaacatcgaagatgttggaagtgaacaattgtaaga |
20814772 |
T |
|
| Q |
130 |
aaatcacagcagtttttccttcttcattgtaaaaaacatacaataatctagagatgctagatattacaaattgtgcttcagtggaagagatatttga |
226 |
Q |
| |
|
|||| | ||||||||||||||| || ||| ||||| ||| | || |||| | | || |||||||||||| |||||| |||||||||||||| |
|
|
| T |
20814771 |
aaattgtggtggtttttccttcttcaatgcaaattacatataatgagcttgagaagttggaggttacaaattgtgattcagttgaagagatatttga |
20814675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 226
Target Start/End: Original strand, 115768 - 115964
Alignment:
| Q |
30 |
aaattagaggaaatcatattgaatgacatggagaacttgaaaacaatatggcaccaccagtttgactcattgaagacgttgaaagtgaataaatgtgaca |
129 |
Q |
| |
|
||||||||| ||||||||||||| || ||||| | |||||| ||||||||||| | || ||||| ||| ||||| |||| ||||||| || ||| | | |
|
|
| T |
115768 |
aaattagagaaaatcatattgaaggatatggacagcttgaagacaatatggcatcggcaatttgaaacatcgaagatgttggaagtgaacaattgtaaga |
115867 |
T |
|
| Q |
130 |
aaatcacagcagtttttccttcttcattgtaaaaaacatacaataatctagagatgctagatattacaaattgtgcttcagtggaagagatatttga |
226 |
Q |
| |
|
|||| | ||||||||||||||| || |||| ||||| ||| | || |||| | | || ||| |||||||| || ||| |||||||||||||| |
|
|
| T |
115868 |
aaattgtggtggtttttccttcttcaatgcaaaacacatataatgagcttgagaagttggaggttagaaattgtgatttagttgaagagatatttga |
115964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 299 - 351
Target Start/End: Original strand, 116042 - 116094
Alignment:
| Q |
299 |
tgaaaaatatatgtagtgtggatcctcaagggattcttagttttcataatcta |
351 |
Q |
| |
|
|||||||||||||||||| |||||| |||| |||||||||||||| |||||| |
|
|
| T |
116042 |
tgaaaaatatatgtagtggagatcctgaaggaattcttagttttcaaaatcta |
116094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 360
Target Start/End: Original strand, 108225 - 108286
Alignment:
| Q |
299 |
tgaaaaatatatgtagtgtggatcctcaagggattcttagttttcataatctagaaaatgta |
360 |
Q |
| |
|
||||||| ||||| |||| ||||||||||| |||||||||||||| |||||| ||||||| |
|
|
| T |
108225 |
tgaaaaagatatggagtgaagatcctcaaggaattcttagttttcaaaatctaataaatgta |
108286 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 30 - 118
Target Start/End: Original strand, 107951 - 108039
Alignment:
| Q |
30 |
aaattagaggaaatcatattgaatgacatggagaacttgaaaacaatatggcaccaccagtttgactcattgaagacgttgaaagtgaa |
118 |
Q |
| |
|
||||||||| |||||||| | || || ||| | |||||||| |||||||||||||||| ||||| |||||||| |||| ||||||| |
|
|
| T |
107951 |
aaattagagaaaatcatactcaaggatatgtacaacttgaagtcaatatggcaccaccaatttgaaaaattgaagatgttggaagtgaa |
108039 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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