View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5005_high_7 (Length: 411)
Name: NF5005_high_7
Description: NF5005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5005_high_7 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 9 - 396
Target Start/End: Complemental strand, 33751424 - 33751035
Alignment:
| Q |
9 |
atcatcataaaaaacacctagaaattagagtgtacaaatgactctaacaaaacgaagaggatcatgaccaaatcctatggttcacatcaatccaagaatt |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
33751424 |
atcatcataaaaaacacctagaaattagagtgtacaaatgactctaacaaaacgaagaggatcatgaccaaatcctttggttcacatcaatccaagaatt |
33751325 |
T |
|
| Q |
109 |
acaaaaatcaatttgatgaaatcagtctaaattaagnnnnnnnatctttagatataacatccatcttccaccacaataaaacataaaagagagatgctac |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33751324 |
acaaaaatcaatttgatgaaatcagtctaaattaagtttttttatctttagatataacatccatcttccaccacaataaaacataaaagagagatgctac |
33751225 |
T |
|
| Q |
209 |
aattaaaaaatgaaacaaattcatcaatcatcaatcattggtatagctagcttcacctaaataccgcctttgtttacattattttggtcttaaccctcta |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33751224 |
aattaaaaaatgaaacaaattcatcaatcatcaatcattggtatagctagcttcacctaaataccgcctttgtttacattattttggtcttaaccctcta |
33751125 |
T |
|
| Q |
309 |
ctctctcgtaatcttgagtttagctacgaagtaagtaaag--tgactaaagattgttatagtccggattcaaactcgggttctaccaaac |
396 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33751124 |
ctctctcgtaatcttgagtttagctacgaagtaagtaaagtctgactaaagattgttatagtccggattcaaactcgggttctaccaaac |
33751035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University