View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5005_low_10 (Length: 392)
Name: NF5005_low_10
Description: NF5005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5005_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 172; Significance: 2e-92; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 81 - 295
Target Start/End: Original strand, 39517976 - 39518188
Alignment:
| Q |
81 |
tcttctccaacatctctgagtatattggtgagttgatttgcaatgcctagtgccaatgcagcattataaatgctctctgttgaagccttggattcaggtg |
180 |
Q |
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| T |
39517976 |
tcttctccaacatctctgagtatattggtgagttgatttgcaattcctagtgccaatgctgcattataaatgctctctgttgaagccttggattcaggtg |
39518075 |
T |
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| Q |
181 |
ctatccccattacacaggaacactcataagacctactgtcccagcaacatagtaacaataaaggtagagcttatcaaaagtgctgtatcttgattttctc |
280 |
Q |
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||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| || |||||||||| ||| || |
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| T |
39518076 |
ctatccccatt--acaggaacactcataagacctactgttccagcaacatagtaacaataaaggtagagctcatcaaaattgttgtatcttgactttgtc |
39518173 |
T |
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| Q |
281 |
aaatccatcctcatc |
295 |
Q |
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||||||||||||||| |
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| T |
39518174 |
aaatccatcctcatc |
39518188 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 20 - 78
Target Start/End: Original strand, 39517219 - 39517277
Alignment:
| Q |
20 |
atctgataggccagcttgtgctagctcatcttgagggagatacgctcttcctcttctag |
78 |
Q |
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| T |
39517219 |
atctgatatgccagcttgtgctagctcatcttgagggagatacactcttcctcttctag |
39517277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 84 - 162
Target Start/End: Original strand, 32687438 - 32687516
Alignment:
| Q |
84 |
tctccaacatctctgagtatattggtgagttgatttgcaatgcctagtgccaatgcagcattataaatgctctctgttg |
162 |
Q |
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| T |
32687438 |
tctccaacatctctgagtatgttggtaagctgatttgcaattcccaaggccaaggcagcattgtatacactctctgttg |
32687516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 81 - 295
Target Start/End: Original strand, 17380468 - 17380680
Alignment:
| Q |
81 |
tcttctccaacatctctgagtatattggtgagttgatttgcaatgcctagtgccaatgcagcattataaatgctctctgttgaagccttggattcaggtg |
180 |
Q |
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||||||||||| ||||| ||||| ||||| |||||||| |||||||| ||||||||||||||||| || ||||| || |||||||| || |||| ||| |
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| T |
17380468 |
tcttctccaacgtctctaagtatgttggtaagttgattagcaatgccaagtgccaatgcagcattgtagatgctttcagttgaagcttttgattgtggtt |
17380567 |
T |
|
| Q |
181 |
ctatccccattacacaggaacactcataagacctactgtcccagcaacatagtaacaataaaggtagagcttatcaaaagtgctgtatcttgattttctc |
280 |
Q |
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|||| |||||| ||||||||||||||||| || || ||||||||||||||||| ||||| ||||| || | |||||| | ||||||||||||||||| |
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| T |
17380568 |
ctatgcccatt--acaggaacactcataaggcccacagtcccagcaacatagtagcaatataggtatagttcatcaaagttattgtatcttgattttctc |
17380665 |
T |
|
| Q |
281 |
aaatccatcctcatc |
295 |
Q |
| |
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| |||| ||||||| |
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| T |
17380666 |
aggtccagcctcatc |
17380680 |
T |
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