View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5005_low_13 (Length: 275)
Name: NF5005_low_13
Description: NF5005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5005_low_13 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 243; Significance: 1e-135; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 16 - 262
Target Start/End: Original strand, 46642280 - 46642526
Alignment:
| Q |
16 |
cttttaataggaacagctgcatgattagaatcaccggatattactctctgattgaattcatgttttatgatcctcttcattcgattatcaccaaacacag |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46642280 |
cttttaataggaacagctgcatgattagaatcaccggatattactctctgattgaattcatgttttatgatcctcttcattcgattatcaccaaacacag |
46642379 |
T |
|
| Q |
116 |
aagtgtgttgatttttctggctttcaaccatcttgtttggatcactatcagttttgttaattttctgtttaccacatagcaccatcttagcttccaccat |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46642380 |
aagtgtgttgatttttctggctttcaaccatcttgtttggatcactatcagttttgttaattttctgtttaccacatagcaccatcttagcttccaccat |
46642479 |
T |
|
| Q |
216 |
tcttcgtgaatcatcagttgaacagacgcctttactttctttcagaa |
262 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
46642480 |
tcttcgtgaatcatcagttgaagagacgcctttactttctttcagaa |
46642526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 18 - 103
Target Start/End: Complemental strand, 46638518 - 46638433
Alignment:
| Q |
18 |
tttaataggaacagctgcatgattagaatcaccggatattactctctgattgaattcatgttttatgatcctcttcattcgattat |
103 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| || |||||||||||||||||| |||||||||||||||| ||| |||||||| |
|
|
| T |
46638518 |
tttaataggaacggctgcatgattagaatcacctgaccttactctctgattgaattgatgttttatgatcctcgtcaatcgattat |
46638433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 18 - 101
Target Start/End: Complemental strand, 46619800 - 46619717
Alignment:
| Q |
18 |
tttaataggaacagctgcatgattagaatcaccggatattactctctgattgaattcatgttttatgatcctcttcattcgatt |
101 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| ||| |||||||| ||||||||| |||||||||||||||| ||| |||||| |
|
|
| T |
46619800 |
tttaataggaacggctgcatgattagaatcaccagatcttactctccgattgaattgatgttttatgatcctcgtcaatcgatt |
46619717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 16 - 159
Target Start/End: Original strand, 46651412 - 46651553
Alignment:
| Q |
16 |
cttttaataggaacagctgcatgattagaatcaccggatattactctctgattgaattcatgttttatgatcctcttcattcgattatcaccaaacacag |
115 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||| ||| ||||||| |||||||| ||| ||| | |||||||||| |||||||||| ||||||| |
|
|
| T |
46651412 |
cttttaataggaacaactgcatgattagaatcacctgatcgtactctccaattgaattgatgcttttttatcctcttcagtcgattatcatcaaacacgt |
46651511 |
T |
|
| Q |
116 |
aagtgtgttgatttttctggctttcaaccatcttgtttggatca |
159 |
Q |
| |
|
| | |||| |||||||||||| | ||||||||||||| |||| |
|
|
| T |
46651512 |
aggcgtgt--atttttctggctattgaccatcttgtttgcatca |
46651553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 166 - 237
Target Start/End: Original strand, 46175820 - 46175891
Alignment:
| Q |
166 |
gttttgttaattttctgtttaccacatagcaccatcttagcttccaccattcttcgtgaatcatcagttgaa |
237 |
Q |
| |
|
||||| || ||||||| ||| |||||| || |||||||||||||||||| || ||||||||||||||||| |
|
|
| T |
46175820 |
gttttattgattttctttttgtcacatatcagcatcttagcttccaccatcattggtgaatcatcagttgaa |
46175891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 62; Significance: 8e-27; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 16 - 165
Target Start/End: Original strand, 15768641 - 15768790
Alignment:
| Q |
16 |
cttttaataggaacagctgcatgattagaatcaccggatattactctctgattgaattcatgttttatgatcctcttcattcgattatcaccaaacacag |
115 |
Q |
| |
|
||||||||||||||| ||| || |||||| ||||| ||| |||||||| ||||||| | ||| |||||||||||||||| |||||||||| ||||| || |
|
|
| T |
15768641 |
cttttaataggaacaactgtattattagagtcacctgatcttactctccgattgaactgatgctttatgatcctcttcagtcgattatcatcaaactcac |
15768740 |
T |
|
| Q |
116 |
aagtgtgttgatttttctggctttcaaccatcttgtttggatcactatca |
165 |
Q |
| |
|
| | |||||||||| | ||| ||||||||||||| |||| |||| ||||| |
|
|
| T |
15768741 |
aggcgtgttgatttgtttggttttcaaccatcttatttgcatcattatca |
15768790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University