View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5005_low_17 (Length: 246)
Name: NF5005_low_17
Description: NF5005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5005_low_17 |
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Alignment Details
Target: chr6 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 22606407 - 22606171
Alignment:
| Q |
1 |
tcaagacctatgtcttaacctagttcaacctctaatcgcaggtggtcgataatagtttctatgactacaactcctatttcacgataatgcttactcaatt |
100 |
Q |
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| T |
22606407 |
tcaagacctatgtcttaacctagttcaacctctaatcgcaggtggtcggtaatagtttctatgactgcaactcttatttcacgataatgcttactcaatt |
22606308 |
T |
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| Q |
101 |
atttttgctctaatgcaaaaattttattctttaaaaattaagaattataaaggaagataatcgaagatgctccaacataacttttacaagaaaaaggcca |
200 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22606307 |
atttttgctctaatgcaaaaaatttattctttaaaaattaagaattataaaggaagataatcgaagatgctccaacataacttttacaagaaaaaggcca |
22606208 |
T |
|
| Q |
201 |
caaaatgtaatgaaattttctaattcccatgatgatg |
237 |
Q |
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||||||||| ||||||||||||||||||||||||||| |
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| T |
22606207 |
caaaatgtattgaaattttctaattcccatgatgatg |
22606171 |
T |
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