View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5005_low_19 (Length: 239)
Name: NF5005_low_19
Description: NF5005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5005_low_19 |
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| [»] scaffold0115 (2 HSPs) |
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Alignment Details
Target: scaffold0115 (Bit Score: 159; Significance: 8e-85; HSPs: 2)
Name: scaffold0115
Description:
Target: scaffold0115; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 10 - 239
Target Start/End: Original strand, 4758 - 4985
Alignment:
| Q |
10 |
catcatcagcgtaaatatttctaaatttacccaaaaattctataaccaaagaaagatttnnnnnnnnncccccaaatagagtattcaactgattaaactc |
109 |
Q |
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| T |
4758 |
catcatcagcgtaaatatttctaaatttacccaaaa-ttctataaccaaagaaagatttaaaaaaaaactcc-aaatagagtattcaactgattaaactc |
4855 |
T |
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| Q |
110 |
aaatattggaggtacgcatgcaaatcctttcttctctgaaacaatttccttcatgctcccacacaatgtcaaactaagtatttctagatgtgaacagcaa |
209 |
Q |
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| T |
4856 |
aaatatgggaggtacgcatgcaaatcctttcttctctgaaagaatttccttcatgcgcccacacaatgtcaaactaagtatttctagatgtgaacaacaa |
4955 |
T |
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| Q |
210 |
gaggccacagcaagcgtaaacagataatct |
239 |
Q |
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| T |
4956 |
gaggccacagaaagcggaaacagataatct |
4985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0115; HSP #2
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 10 - 239
Target Start/End: Original strand, 12498 - 12725
Alignment:
| Q |
10 |
catcatcagcgtaaatatttctaaatttacccaaaaattctataaccaaagaaagatttnnnnnnnnncccccaaatagagtattcaactgattaaactc |
109 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | || ||||||||||||||||||||||||||| |
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| T |
12498 |
catcatcagcgtaaatatttctaaatttacccaaaa-ttctataaccaaagaaagatttaaaaaaaaactcc-aaatagagtattcaactgattaaactc |
12595 |
T |
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| Q |
110 |
aaatattggaggtacgcatgcaaatcctttcttctctgaaacaatttccttcatgctcccacacaatgtcaaactaagtatttctagatgtgaacagcaa |
209 |
Q |
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| T |
12596 |
aaatatgggaggtacgcatgcaaatcctttcttctctgaaagaatttccttcatgcgcccacacaatgtcaaactaagtatttctagatgtgaacaacaa |
12695 |
T |
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| Q |
210 |
gaggccacagcaagcgtaaacagataatct |
239 |
Q |
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| T |
12696 |
gaggccacagaaagcggaaacagataatct |
12725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 209
Target Start/End: Original strand, 19344395 - 19344471
Alignment:
| Q |
133 |
atcctttcttctctgaaacaatttccttcatgctcccacacaatgtcaaactaagtatttctagatgtgaacagcaa |
209 |
Q |
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| T |
19344395 |
atcctttcttcactgcaacaatttccttcatgttctcacacgataacaaattaagtattttaagatgtgagcagcaa |
19344471 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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