View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5005_low_21 (Length: 230)

Name: NF5005_low_21
Description: NF5005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5005_low_21
NF5005_low_21
[»] chr1 (10 HSPs)
chr1 (18-220)||(30858284-30858500)
chr1 (26-134)||(1671417-1671525)
chr1 (22-134)||(22605326-22605438)
chr1 (24-89)||(33686633-33686698)
chr1 (21-89)||(12926760-12926828)
chr1 (18-89)||(10308406-10308477)
chr1 (24-73)||(5770651-5770700)
chr1 (22-69)||(7014861-7014908)
chr1 (30-84)||(3781856-3781910)
chr1 (21-65)||(21482862-21482906)
[»] chr4 (12 HSPs)
chr4 (21-135)||(37694598-37694712)
chr4 (21-105)||(34939445-34939529)
chr4 (21-69)||(2777927-2777975)
chr4 (21-85)||(42118911-42118975)
chr4 (30-74)||(8932522-8932566)
chr4 (23-74)||(52032771-52032822)
chr4 (35-69)||(42118923-42118957)
chr4 (35-69)||(43139626-43139660)
chr4 (33-74)||(16525147-16525188)
chr4 (32-69)||(49261883-49261920)
chr4 (38-70)||(13856164-13856196)
chr4 (30-74)||(24608249-24608293)
[»] chr7 (7 HSPs)
chr7 (27-123)||(33802873-33802969)
chr7 (21-95)||(39283916-39283990)
chr7 (27-85)||(4035244-4035302)
chr7 (35-73)||(8260828-8260866)
chr7 (21-98)||(8260803-8260880)
chr7 (36-73)||(28139384-28139421)
chr7 (38-74)||(2912210-2912246)
[»] chr5 (7 HSPs)
chr5 (34-105)||(24531027-24531098)
chr5 (27-134)||(40034094-40034200)
chr5 (21-69)||(1081974-1082022)
chr5 (21-89)||(2786665-2786733)
chr5 (24-74)||(12143994-12144044)
chr5 (30-67)||(11125879-11125916)
chr5 (27-67)||(8688171-8688211)
[»] chr2 (8 HSPs)
chr2 (18-89)||(41192466-41192537)
chr2 (21-85)||(5814622-5814686)
chr2 (21-114)||(2195253-2195346)
chr2 (21-85)||(21083705-21083769)
chr2 (35-73)||(6903815-6903853)
chr2 (21-105)||(4616724-4616808)
chr2 (33-89)||(6903813-6903869)
chr2 (21-58)||(37057163-37057200)
[»] chr6 (6 HSPs)
chr6 (22-89)||(30634202-30634269)
chr6 (21-89)||(11598952-11599020)
chr6 (21-67)||(13312541-13312587)
chr6 (38-74)||(1077584-1077620)
chr6 (24-95)||(3515307-3515379)
chr6 (21-69)||(23912336-23912384)
[»] chr3 (9 HSPs)
chr3 (21-104)||(49501618-49501701)
chr3 (21-67)||(49742185-49742231)
chr3 (21-74)||(53401560-53401613)
chr3 (18-68)||(6755798-6755848)
chr3 (35-71)||(50561674-50561710)
chr3 (35-74)||(36182818-36182857)
chr3 (18-68)||(6462949-6462999)
chr3 (21-105)||(47560463-47560547)
chr3 (35-67)||(23029602-23029634)
[»] chr8 (7 HSPs)
chr8 (18-105)||(1217708-1217795)
chr8 (21-105)||(4759294-4759378)
chr8 (22-105)||(42182577-42182660)
chr8 (21-89)||(15743275-15743343)
chr8 (21-79)||(5913202-5913260)
chr8 (21-69)||(4322649-4322697)
chr8 (32-136)||(43835423-43835526)


Alignment Details
Target: chr1 (Bit Score: 122; Significance: 1e-62; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 18 - 220
Target Start/End: Complemental strand, 30858500 - 30858284
Alignment:
Q  18 acacagagcttgtaaggtgcgtgagttaagtcacgct----------------gcgtaacttaactcatgcagagttatatttggaaatcatgctggacg 101  Q
    |||||||||||||||||||||||||||||||||||||                |||| |||||||||| |||||| ||||||||||||||||||| ||||    
T  30858500 acacagagcttgtaaggtgcgtgagttaagtcacgctgcatgacttaactcacgcgtgacttaactcacgcagaggtatatttggaaatcatgct-gacg 30858402  T
Q  102 cgagtggtttgtggtgaggaaagagcagaattctattgtttagggcaacttcaatttgatcctttgctctcatttcaaatgggttaagtcaagcacatca 201  Q
    |||||| ||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  30858401 cgagtgttttgtggtg-gggaagagcagaattctattgtttagggcaacttcaatttgatcctttgctctcatttcaaatgggttaagccaagcacatca 30858303  T
Q  202 atgaattaattttcttcga 220  Q
    ||||||||||||| |||||    
T  30858302 atgaattaattttgttcga 30858284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 26 - 134
Target Start/End: Original strand, 1671417 - 1671525
Alignment:
Q  26 cttgtaaggtgcgtgagttaagtcacgctgcgtaacttaactcatgcagagttatatttggaaatcatgctggacgcgagtggtttgtggtgaggaaaga 125  Q
    |||||||||||||||| |||||||||||||||| ||||||||||| ||||| |||||||| |||||||| |||||||||||| ||| || || || ||||    
T  1671417 cttgtaaggtgcgtgaattaagtcacgctgcgtgacttaactcatacagaggtatatttgaaaatcatgttggacgcgagtgttttatgatgggggaaga 1671516  T
Q  126 gcagaattc 134  Q
    |||||||||    
T  1671517 gcagaattc 1671525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 22 - 134
Target Start/End: Complemental strand, 22605438 - 22605326
Alignment:
Q  22 agagcttgtaaggtgcgtgagttaagtcacgctgcgtaacttaactcatgcagagttatatttggaaatcatgctggacgcgagtggtttgtggtgagga 121  Q
    ||||||||| |||||||||| |||||||||||||||  |||||||||| | || ||||||||| |||| |||| ||| |||||||| |||||| || ||     
T  22605438 agagcttgtgaggtgcgtgacttaagtcacgctgcgcgacttaactcacgtagggttatatttagaaaacatgttgggcgcgagtgttttgtgctggggg 22605339  T
Q  122 aagagcagaattc 134  Q
    |||||||||||||    
T  22605338 aagagcagaattc 22605326  T

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Target: chr1; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 24 - 89
Target Start/End: Original strand, 33686633 - 33686698
Alignment:
Q  24 agcttgtaaggtgcgtgagttaagtcacgctgcgtaacttaactcatgcagagttatatttggaaa 89  Q
    ||||||| |||||||||||||||||| |||||||| |||||||||| ||||| |||||||||||||    
T  33686633 agcttgtgaggtgcgtgagttaagtctcgctgcgtgacttaactcacgcagaattatatttggaaa 33686698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 21 - 89
Target Start/End: Complemental strand, 12926828 - 12926760
Alignment:
Q  21 cagagcttgtaaggtgcgtgagttaagtcacgctgcgtaacttaactcatgcagagttatatttggaaa 89  Q
    |||||||||| |||||| ||||||||||| |||||||| |||||||||| |||| ||||||||||||||    
T  12926828 cagagcttgtgaggtgcatgagttaagtctcgctgcgtgacttaactcacgcagggttatatttggaaa 12926760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 18 - 89
Target Start/End: Complemental strand, 10308477 - 10308406
Alignment:
Q  18 acacagagcttgtaaggtgcgtgagttaagtcacgctgcgtaacttaactcatgcagagttatatttggaaa 89  Q
    ||||| ||||||| |||||||||||||||||| |||||||| |||||||||| |||| ||||||||| ||||    
T  10308477 acacaaagcttgtgaggtgcgtgagttaagtctcgctgcgtgacttaactcacgcagggttatatttagaaa 10308406  T

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Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 24 - 73
Target Start/End: Original strand, 5770651 - 5770700
Alignment:
Q  24 agcttgtaaggtgcgtgagttaagtcacgctgcgtaacttaactcatgca 73  Q
    ||||| |||||||||||||||||||||||| |||| ||||||||||||||    
T  5770651 agcttataaggtgcgtgagttaagtcacgcagcgtgacttaactcatgca 5770700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 69
Target Start/End: Original strand, 7014861 - 7014908
Alignment:
Q  22 agagcttgtaaggtgcgtgagttaagtcacgctgcgtaacttaactca 69  Q
    ||||||||| |||||||||||||||||| ||||| || ||||||||||    
T  7014861 agagcttgtgaggtgcgtgagttaagtctcgctgtgtgacttaactca 7014908  T

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Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 84
Target Start/End: Complemental strand, 3781910 - 3781856
Alignment:
Q  30 taaggtgcgtgagttaagtcacgctgcgtaacttaactcatgcagagttatattt 84  Q
    ||||||| ||||||||||||||||||||| | |||||||| |||| | |||||||    
T  3781910 taaggtgtgtgagttaagtcacgctgcgtgatttaactcacgcaggggtatattt 3781856  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 65
Target Start/End: Complemental strand, 21482906 - 21482862
Alignment:
Q  21 cagagcttgtaaggtgcgtgagttaagtcacgctgcgtaacttaa 65  Q
    |||||||| ||||||| || |||||||||||||||||| ||||||    
T  21482906 cagagcttataaggtgtgttagttaagtcacgctgcgtgacttaa 21482862  T

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Target: chr4 (Bit Score: 59; Significance: 4e-25; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 21 - 135
Target Start/End: Original strand, 37694598 - 37694712
Alignment:
Q  21 cagagcttgtaaggtgcgtgagttaagtcacgctgcgtaacttaactcatgcagagttatatttggaaatcatgctggacgcgagtggtttgtggtgagg 120  Q
    |||||||||| ||||||||||||||||||||||||||| |||||||||| |||| | |||||||||||| |||| ||| |||||||| |||||| || ||    
T  37694598 cagagcttgtgaggtgcgtgagttaagtcacgctgcgtgacttaactcacgcaggggtatatttggaaaacatggtgggcgcgagtgttttgtgctgggg 37694697  T
Q  121 aaagagcagaattct 135  Q
      |||||| ||||||    
T  37694698 ggagagcaaaattct 37694712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 21 - 105
Target Start/End: Original strand, 34939445 - 34939529
Alignment:
Q  21 cagagcttgtaaggtgcgtgagttaagtcacgctgcgtaacttaactcatgcagagttatatttggaaatcatgctggacgcgag 105  Q
    |||||||||| ||||||||| ||||||||||||| ||| |||||||||| |||| || ||||||| ||||||||| || ||||||    
T  34939445 cagagcttgtgaggtgcgtgtgttaagtcacgctacgtgacttaactcacgcagggtcatatttgaaaatcatgcagggcgcgag 34939529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 21 - 69
Target Start/End: Complemental strand, 2777975 - 2777927
Alignment:
Q  21 cagagcttgtaaggtgcgtgagttaagtcacgctgcgtaacttaactca 69  Q
    |||| ||| ||||||||||||||||||||||||||||| ||||||||||    
T  2777975 cagaacttataaggtgcgtgagttaagtcacgctgcgtgacttaactca 2777927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 21 - 85
Target Start/End: Complemental strand, 42118975 - 42118911
Alignment:
Q  21 cagagcttgtaaggtgcgtgagttaagtcacgctgcgtaacttaactcatgcagagttatatttg 85  Q
    |||| ||||| ||||| |||||||||||||||| |||| |||||||||| |||| ||||||||||    
T  42118975 cagaacttgtgaggtgtgtgagttaagtcacgcagcgtgacttaactcacgcagggttatatttg 42118911  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 74
Target Start/End: Complemental strand, 8932566 - 8932522
Alignment:
Q  30 taaggtgcgtgagttaagtcacgctgcgtaacttaactcatgcag 74  Q
    |||||||||||||||||||||| ||| || |||||||||||||||    
T  8932566 taaggtgcgtgagttaagtcacactgtgtgacttaactcatgcag 8932522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 74
Target Start/End: Original strand, 52032771 - 52032822
Alignment:
Q  23 gagcttgtaaggtgcgtgagttaagtcacgctgcgtaacttaactcatgcag 74  Q
    |||||| | |||||||||||||||||| |||||||| |||||||||| ||||    
T  52032771 gagcttatgaggtgcgtgagttaagtctcgctgcgtgacttaactcacgcag 52032822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 69
Target Start/End: Original strand, 42118923 - 42118957
Alignment:
Q  35 tgcgtgagttaagtcacgctgcgtaacttaactca 69  Q
    |||||||||||||||||||||||| ||||||||||    
T  42118923 tgcgtgagttaagtcacgctgcgtgacttaactca 42118957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 69
Target Start/End: Complemental strand, 43139660 - 43139626
Alignment:
Q  35 tgcgtgagttaagtcacgctgcgtaacttaactca 69  Q
    ||||||||||||||||||| |||||||||||||||    
T  43139660 tgcgtgagttaagtcacgcagcgtaacttaactca 43139626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 74
Target Start/End: Original strand, 16525147 - 16525188
Alignment:
Q  33 ggtgcgtgagttaagtcacgctgcgtaacttaactcatgcag 74  Q
    ||||||||||||||| |||||| ||| |||||||||||||||    
T  16525147 ggtgcgtgagttaagccacgcttcgtgacttaactcatgcag 16525188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 32 - 69
Target Start/End: Original strand, 49261883 - 49261920
Alignment:
Q  32 aggtgcgtgagttaagtcacgctgcgtaacttaactca 69  Q
    ||||||||||||||||||| ||||||| ||||||||||    
T  49261883 aggtgcgtgagttaagtcatgctgcgtgacttaactca 49261920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 70
Target Start/End: Complemental strand, 13856196 - 13856164
Alignment:
Q  38 gtgagttaagtcacgctgcgtaacttaactcat 70  Q
    ||||||||||||||||||||| |||||||||||    
T  13856196 gtgagttaagtcacgctgcgtgacttaactcat 13856164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 74
Target Start/End: Original strand, 24608249 - 24608293
Alignment:
Q  30 taaggtgcgtgagttaagtcacgctgcgtaacttaactcatgcag 74  Q
    |||||||||  ||||||||| ||||||||||||||||| ||||||    
T  24608249 taaggtgcgctagttaagtctcgctgcgtaacttaactaatgcag 24608293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 6e-24; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 27 - 123
Target Start/End: Complemental strand, 33802969 - 33802873
Alignment:
Q  27 ttgtaaggtgcgtgagttaagtcacgctgcgtaacttaactcatgcagagttatatttggaaatcatgctggacgcgagtggtttgtggtgaggaaa 123  Q
    |||||||||||||||||||||||||||||||| |||||||||| |||| | |||||||| |||||||||| | |||||||| |||||| || |||||    
T  33802969 ttgtaaggtgcgtgagttaagtcacgctgcgtgacttaactcacgcaggggtatatttgaaaatcatgctaggcgcgagtgttttgtgctggggaaa 33802873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 21 - 95
Target Start/End: Complemental strand, 39283990 - 39283916
Alignment:
Q  21 cagagcttgtaaggtgcgtgagttaagtcacgctgcgtaacttaactcatgcagagttatatttggaaatcatgc 95  Q
    |||||||| | |||||||||||||||| |||||||||| |||||||||| |||  ||||||||| |||| |||||    
T  39283990 cagagcttatgaggtgcgtgagttaagccacgctgcgtgacttaactcacgcatggttatattttgaaaacatgc 39283916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 27 - 85
Target Start/End: Original strand, 4035244 - 4035302
Alignment:
Q  27 ttgtaaggtgcgtgagttaagtcacgctgcgtaacttaactcatgcagagttatatttg 85  Q
    |||| |||||| ||||||||||| |||||||| |||||||||| |||| ||||||||||    
T  4035244 ttgtgaggtgcatgagttaagtctcgctgcgtgacttaactcacgcagggttatatttg 4035302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 35 - 73
Target Start/End: Original strand, 8260828 - 8260866
Alignment:
Q  35 tgcgtgagttaagtcacgctgcgtaacttaactcatgca 73  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  8260828 tgcgtgagttaagtcacgctgcgtgacttaactcatgca 8260866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 98
Target Start/End: Complemental strand, 8260880 - 8260803
Alignment:
Q  21 cagagcttgtaaggtgcgtgagttaagtcacgctgcgtaacttaactcatgcagagttatatttggaaatcatgctgg 98  Q
    ||||| || |||||||| ||||||||||||||| |||| |||||||||| ||||   |||||||| ||||||| ||||    
T  8260880 cagagattataaggtgcatgagttaagtcacgcagcgtgacttaactcacgcaggtgtatatttgaaaatcattctgg 8260803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 36 - 73
Target Start/End: Original strand, 28139384 - 28139421
Alignment:
Q  36 gcgtgagttaagtcacgctgcgtaacttaactcatgca 73  Q
    ||||||||||| |||||| |||||||||||||||||||    
T  28139384 gcgtgagttaactcacgcagcgtaacttaactcatgca 28139421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 74
Target Start/End: Complemental strand, 2912246 - 2912210
Alignment:
Q  38 gtgagttaagtcacgctgcgtaacttaactcatgcag 74  Q
    |||||||||||||||| |||| |||||||||||||||    
T  2912246 gtgagttaagtcacgcagcgtgacttaactcatgcag 2912210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 6e-21; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 34 - 105
Target Start/End: Original strand, 24531027 - 24531098
Alignment:
Q  34 gtgcgtgagttaagtcacgctgcgtaacttaactcatgcagagttatatttggaaatcatgctggacgcgag 105  Q
    |||||||||||||||||| |||||| |||||||||| |||| | ||||||||||||||||||||||||||||    
T  24531027 gtgcgtgagttaagtcacactgcgtgacttaactcacgcaggggtatatttggaaatcatgctggacgcgag 24531098  T

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Target: chr5; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 27 - 134
Target Start/End: Original strand, 40034094 - 40034200
Alignment:
Q  27 ttgtaaggtgcgtgagttaagtcacgctgcgtaacttaactcatgcagagttatatttggaaatcatgctggacgcgagtggtttgtggtgaggaaagag 126  Q
    ||||||||||| |||||||||||||| ||||| ||||||||||||||| |||||||||| |||  ||  |||||||||||| ||||||  | ||||||||    
T  40034094 ttgtaaggtgcatgagttaagtcacgatgcgtgacttaactcatgcagggttatatttgaaaaagattttggacgcgagtgttttgtgcag-ggaaagag 40034192  T
Q  127 cagaattc 134  Q
    ||||||||    
T  40034193 cagaattc 40034200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 21 - 69
Target Start/End: Original strand, 1081974 - 1082022
Alignment:
Q  21 cagagcttgtaaggtgcgtgagttaagtcacgctgcgtaacttaactca 69  Q
    |||||||||| |||||||||||||||||| |||||||| ||||||||||    
T  1081974 cagagcttgtgaggtgcgtgagttaagtctcgctgcgtgacttaactca 1082022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 21 - 89
Target Start/End: Complemental strand, 2786733 - 2786665
Alignment:
Q  21 cagagcttgtaaggtgcgtgagttaagtcacgctgcgtaacttaactcatgcagagttatatttggaaa 89  Q
    |||||||||| |||||||||||||||||| || ||||  |||||||||| |||| ||| ||||||||||    
T  2786733 cagagcttgtgaggtgcgtgagttaagtctcgttgcgcgacttaactcacgcagggttgtatttggaaa 2786665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 24 - 74
Target Start/End: Complemental strand, 12144044 - 12143994
Alignment:
Q  24 agcttgtaaggtgcgtgagttaagtcacgctgcgtaacttaactcatgcag 74  Q
    ||||||| |||||||||||||||||| |||||||| |||||||||| ||||    
T  12144044 agcttgtgaggtgcgtgagttaagtctcgctgcgtgacttaactcacgcag 12143994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 30 - 67
Target Start/End: Original strand, 11125879 - 11125916
Alignment:
Q  30 taaggtgcgtgagttaagtcacgctgcgtaacttaact 67  Q
    ||||||||||||||||||||||| ||||| ||||||||    
T  11125879 taaggtgcgtgagttaagtcacgttgcgtgacttaact 11125916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 67
Target Start/End: Complemental strand, 8688211 - 8688171
Alignment:
Q  27 ttgtaaggtgcgtgagttaagtcacgctgcgtaacttaact 67  Q
    |||| ||||||||||||||||||||||||| | ||||||||    
T  8688211 ttgtgaggtgcgtgagttaagtcacgctgcatgacttaact 8688171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 6e-21; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 18 - 89
Target Start/End: Original strand, 41192466 - 41192537
Alignment:
Q  18 acacagagcttgtaaggtgcgtgagttaagtcacgctgcgtaacttaactcatgcagagttatatttggaaa 89  Q
    ||||||||||||| |||||||||||||||||| |||||||| |||||||||| |||| ||||||||||||||    
T  41192466 acacagagcttgtgaggtgcgtgagttaagtctcgctgcgtgacttaactcacgcagggttatatttggaaa 41192537  T

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Target: chr2; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 21 - 85
Target Start/End: Original strand, 5814622 - 5814686
Alignment:
Q  21 cagagcttgtaaggtgcgtgagttaagtcacgctgcgtaacttaactcatgcagagttatatttg 85  Q
    |||||||||| |||||||||||||||||| |||||||| |||||||||| |||| ||||||||||    
T  5814622 cagagcttgtgaggtgcgtgagttaagtctcgctgcgtgacttaactcacgcagggttatatttg 5814686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 21 - 114
Target Start/End: Original strand, 2195253 - 2195346
Alignment:
Q  21 cagagcttgtaaggtgcgtgagttaagtcacgctgcgtaacttaactcatgcagagttatatttggaaatcatgctggacgcgagtggtttgtg 114  Q
    |||||||||| |||| |||||||||||||||| |||||   |||||||| ||||||||||||||||||| ||| | || || ||||| ||||||    
T  2195253 cagagcttgtgaggtacgtgagttaagtcacgttgcgtgtgttaactcacgcagagttatatttggaaaacatacggggcgtgagtgttttgtg 2195346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 21 - 85
Target Start/End: Complemental strand, 21083769 - 21083705
Alignment:
Q  21 cagagcttgtaaggtgcgtgagttaagtcacgctgcgtaacttaactcatgcagagttatatttg 85  Q
    |||||||||| || ||||||||||||||| | |||||| |||||||||| |||| ||||||||||    
T  21083769 cagagcttgtgagatgcgtgagttaagtctcactgcgtgacttaactcacgcagggttatatttg 21083705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 35 - 73
Target Start/End: Complemental strand, 6903853 - 6903815
Alignment:
Q  35 tgcgtgagttaagtcacgctgcgtaacttaactcatgca 73  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  6903853 tgcgtgagttaagtcacgctgcgtgacttaactcatgca 6903815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 105
Target Start/End: Original strand, 4616724 - 4616808
Alignment:
Q  21 cagagcttgtaaggtgcgtgagttaagtcacgctgcgtaacttaactcatgcagagttatatttggaaatcatgctggacgcgag 105  Q
    |||||||||| | |||||||||||||||||| | |||| ||||||||||  ||  |||||||||| ||| ||||| || ||||||    
T  4616724 cagagcttgtgaagtgcgtgagttaagtcacacagcgtgacttaactcacacatggttatatttgaaaaacatgcagggcgcgag 4616808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 89
Target Start/End: Original strand, 6903813 - 6903869
Alignment:
Q  33 ggtgcgtgagttaagtcacgctgcgtaacttaactcatgcagagttatatttggaaa 89  Q
    ||||| ||||||||||||||| |||| |||||||||| |||| | ||||||||||||    
T  6903813 ggtgcatgagttaagtcacgcagcgtgacttaactcacgcagtggtatatttggaaa 6903869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 58
Target Start/End: Complemental strand, 37057200 - 37057163
Alignment:
Q  21 cagagcttgtaaggtgcgtgagttaagtcacgctgcgt 58  Q
    |||||||||| |||||||||||||||||||||| ||||    
T  37057200 cagagcttgtgaggtgcgtgagttaagtcacgcagcgt 37057163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 1e-18; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 22 - 89
Target Start/End: Original strand, 30634202 - 30634269
Alignment:
Q  22 agagcttgtaaggtgcgtgagttaagtcacgctgcgtaacttaactcatgcagagttatatttggaaa 89  Q
    ||||||||| |||||||||||||||||| |||||||| |||||||||| |||| ||||||||||||||    
T  30634202 agagcttgtgaggtgcgtgagttaagtctcgctgcgtgacttaactcacgcagggttatatttggaaa 30634269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 21 - 89
Target Start/End: Complemental strand, 11599020 - 11598952
Alignment:
Q  21 cagagcttgtaaggtgcgtgagttaagtcacgctgcgtaacttaactcatgcagagttatatttggaaa 89  Q
    |||||||||| |||||||||||||||||| ||| | || | |||||||| |||| ||||||||||||||    
T  11599020 cagagcttgtgaggtgcgtgagttaagtctcgcggtgtgagttaactcacgcagggttatatttggaaa 11598952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 67
Target Start/End: Complemental strand, 13312587 - 13312541
Alignment:
Q  21 cagagcttgtaaggtgcgtgagttaagtcacgctgcgtaacttaact 67  Q
    |||||||| |||||||||| ||||||||||||| |||| ||||||||    
T  13312587 cagagcttataaggtgcgttagttaagtcacgcagcgtgacttaact 13312541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 74
Target Start/End: Original strand, 1077584 - 1077620
Alignment:
Q  38 gtgagttaagtcacgctgcgtaacttaactcatgcag 74  Q
    |||||||||||||||| ||||||||||||||| ||||    
T  1077584 gtgagttaagtcacgcagcgtaacttaactcacgcag 1077620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 95
Target Start/End: Original strand, 3515307 - 3515379
Alignment:
Q  24 agcttgtaaggtgcgtgagttaagtcacgctgcgtaactt-aactcatgcagagttatatttggaaatcatgc 95  Q
    ||||||| | |||||||||||||||||| ||| || |||| ||||||  ||| |||||||||||||| |||||    
T  3515307 agcttgtgaagtgcgtgagttaagtcacactgtgtgacttaaactcaaacagggttatatttggaaaacatgc 3515379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 69
Target Start/End: Original strand, 23912336 - 23912384
Alignment:
Q  21 cagagcttgtaaggtgcgtgagttaagtcacgctgcgtaacttaactca 69  Q
    |||||||| |||||||||||||||||||||| | |||| |||| |||||    
T  23912336 cagagcttataaggtgcgtgagttaagtcacacggcgtgacttcactca 23912384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 1e-18; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 21 - 104
Target Start/End: Original strand, 49501618 - 49501701
Alignment:
Q  21 cagagcttgtaaggtgcgtgagttaagtcacgctgcgtaacttaactcatgcagagttatatttggaaatcatgctggacgcga 104  Q
    |||||||||| |||||||||||||||||| ||||| || |||||||||| |||| ||||||||||||||  |||| ||||||||    
T  49501618 cagagcttgtgaggtgcgtgagttaagtctcgctgtgtgacttaactcacgcagggttatatttggaaaaaatgcaggacgcga 49501701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 21 - 67
Target Start/End: Original strand, 49742185 - 49742231
Alignment:
Q  21 cagagcttgtaaggtgcgtgagttaagtcacgctgcgtaacttaact 67  Q
    |||||||||| ||||||||||||||||||||||||||| ||||||||    
T  49742185 cagagcttgtgaggtgcgtgagttaagtcacgctgcgtgacttaact 49742231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 74
Target Start/End: Original strand, 53401560 - 53401613
Alignment:
Q  21 cagagcttgtaaggtgcgtgagttaagtcacgctgcgtaacttaactcatgcag 74  Q
    |||||||| | |||||||||||||||||| ||||||||||||||||||| ||||    
T  53401560 cagagcttatgaggtgcgtgagttaagtctcgctgcgtaacttaactcacgcag 53401613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 18 - 68
Target Start/End: Original strand, 6755798 - 6755848
Alignment:
Q  18 acacagagcttgtaaggtgcgtgagttaagtcacgctgcgtaacttaactc 68  Q
    ||||| ||||| |||||||||||||||||||||||| |||| |||||||||    
T  6755798 acacaaagcttataaggtgcgtgagttaagtcacgcagcgtgacttaactc 6755848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 71
Target Start/End: Complemental strand, 50561710 - 50561674
Alignment:
Q  35 tgcgtgagttaagtcacgctgcgtaacttaactcatg 71  Q
    |||||||||||||||||||||||| ||||||||||||    
T  50561710 tgcgtgagttaagtcacgctgcgtgacttaactcatg 50561674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 74
Target Start/End: Complemental strand, 36182857 - 36182818
Alignment:
Q  35 tgcgtgagttaagtcacgctgcgtaacttaactcatgcag 74  Q
    |||||||||||||||||||||||| |||||||||| ||||    
T  36182857 tgcgtgagttaagtcacgctgcgtgacttaactcacgcag 36182818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 6462999 - 6462949
Alignment:
Q  18 acacagagcttgtaaggtgcgtgagttaagtcacgctgcgtaacttaactc 68  Q
    ||||| ||||| ||||||||||||||||||||||||  ||| |||||||||    
T  6462999 acacaaagcttataaggtgcgtgagttaagtcacgcaacgtgacttaactc 6462949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 105
Target Start/End: Original strand, 47560463 - 47560547
Alignment:
Q  21 cagagcttgtaaggtgcgtgagttaagtcacgctgcgtaacttaactcatgcagagt-tatatttggaaatcatgctggacgcgag 105  Q
    |||| ||| ||||||| |||||||||||||||| |||| ||||||||||  || ||| |||| |||||||| ||||||| ||||||    
T  47560463 cagaacttataaggtgtgtgagttaagtcacgcggcgtgacttaactcacaca-agtgtataattggaaattatgctgggcgcgag 47560547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 67
Target Start/End: Complemental strand, 23029634 - 23029602
Alignment:
Q  35 tgcgtgagttaagtcacgctgcgtaacttaact 67  Q
    |||||||||||||||||||||||| ||||||||    
T  23029634 tgcgtgagttaagtcacgctgcgtgacttaact 23029602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 3e-16; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 18 - 105
Target Start/End: Complemental strand, 1217795 - 1217708
Alignment:
Q  18 acacagagcttgtaaggtgcgtgagttaagtcacgctgcgtaacttaactcatgcagagttatatttggaaatcatgctggacgcgag 105  Q
    ||||| ||||||| ||||||||||||||||||||||  ||| ||||||||||  ||| |||||||||||||| ||||| || ||||||    
T  1217795 acacaaagcttgtgaggtgcgtgagttaagtcacgcaacgtgacttaactcacacagggttatatttggaaaacatgcagggcgcgag 1217708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 21 - 105
Target Start/End: Original strand, 4759294 - 4759378
Alignment:
Q  21 cagagcttgtaaggtgcgtgagttaagtcacgctgcgtaacttaactcatgcagagttatatttggaaatcatgctggacgcgag 105  Q
    |||||||||| ||||||||| ||||||||||| ||||| |||||||| | |||| |||||||||| ||| |||| ||| ||||||    
T  4759294 cagagcttgtgaggtgcgtgtgttaagtcacgttgcgtgacttaacttacgcagggttatatttgaaaaacatgttgggcgcgag 4759378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 22 - 105
Target Start/End: Complemental strand, 42182660 - 42182577
Alignment:
Q  22 agagcttgtaaggtgcgtgagttaagtcacgctgcgtaacttaactcatgcagagttatatttggaaatcatgctggacgcgag 105  Q
    ||||||||| || ||||||||||||||||||| | || |||||||||| ||||  ||||||||||||| ||||| || ||||||    
T  42182660 agagcttgtgagatgcgtgagttaagtcacgcagtgtgacttaactcacgcaggattatatttggaaaacatgcagggcgcgag 42182577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 21 - 89
Target Start/End: Original strand, 15743275 - 15743343
Alignment:
Q  21 cagagcttgtaaggtgcgtgagttaagtcacgctgcgtaacttaactcatgcagagttatatttggaaa 89  Q
    |||||||||| ||||||||||||||||||  ||||||| ||||||||||  |||  |||||||||||||    
T  15743275 cagagcttgtgaggtgcgtgagttaagtcttgctgcgtgacttaactcacacaggattatatttggaaa 15743343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 21 - 79
Target Start/End: Original strand, 5913202 - 5913260
Alignment:
Q  21 cagagcttgtaaggtgcgtgagttaagtcacgctgcgtaacttaactcatgcagagtta 79  Q
    |||||||||| |||||||||||||||||||||| | || |||||||||| |||| ||||    
T  5913202 cagagcttgtgaggtgcgtgagttaagtcacgcggtgtgacttaactcacgcagggtta 5913260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 69
Target Start/End: Complemental strand, 4322697 - 4322649
Alignment:
Q  21 cagagcttgtaaggtgcgtgagttaagtcacgctgcgtaacttaactca 69  Q
    |||| ||||| |||||||||||||||||| |||||||| | ||||||||    
T  4322697 cagaacttgtgaggtgcgtgagttaagtctcgctgcgtgagttaactca 4322649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 136
Target Start/End: Original strand, 43835423 - 43835526
Alignment:
Q  32 aggtgcgtgagttaagtcacgctgcgtaacttaactcatgcagagttatatttggaaatcatgctggacgcgagtggtttgtggtgaggaaagagcagaa 131  Q
    ||||| ||||||||||||  ||||||| |||||||||| ||| || |||||||||||||   | ||||| |||||| |||||| || | ||| |||| ||    
T  43835423 aggtgtgtgagttaagtcctgctgcgtgacttaactcacgca-agatatatttggaaattcagttggacacgagtgttttgtgttgggtaaatagcaaaa 43835521  T
Q  132 ttcta 136  Q
    |||||    
T  43835522 ttcta 43835526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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