View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5005_low_8 (Length: 404)
Name: NF5005_low_8
Description: NF5005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5005_low_8 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 325; Significance: 0; HSPs: 10)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 19 - 391
Target Start/End: Complemental strand, 27432957 - 27432585
Alignment:
| Q |
19 |
acgaactggatgctccgacaacaatggaaagttcagctgtgccaccgccgattgtgcctctggtcaagtcagttgcaacggtgctggcgcaatcccacca |
118 |
Q |
| |
|
|||||| ||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |
|
|
| T |
27432957 |
acgaaccggatgctccaacaacaatggaaagttcagttgtgccaccgccgattgtgcctctggtcaagtcggttgtaacggtgctggcgcaatcccacca |
27432858 |
T |
|
| Q |
119 |
gcaacattggtagaaataaccgtagcaacaaacgggggacaagatttctacgatgtgagcaatgtggatggattcaacgtaccaatgtcggtaacgccac |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||||| |
|
|
| T |
27432857 |
gcaacattggtagaaataaccgtagcaacaaacgggggacaagatttctatgatgtgagcaatgtggatggattcaacgtgccaatgtctgtaacgccac |
27432758 |
T |
|
| Q |
219 |
aaggtgggagtggtgactgcaaaacctccagttgtccggggaacattaatggtgtgtgtccttcagaactccaagtgataggttctgatgggagtgtggt |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
27432757 |
aaggtgggagtggtgactgcaaaacctccagttgtccagggaacattaatgttgtgtgcccttcagagctccaagtgataggttctgatgggagtgtggt |
27432658 |
T |
|
| Q |
319 |
tgcttgtaagagcgcttgtttggctttaaacgaagataaatattgttgtcgtggagattacaataccgaagaa |
391 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27432657 |
tgcttgtaagagcgcttgtttggctttaaacgaagataaatattgttgtcgtggagattacaataccgaagaa |
27432585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 20 - 391
Target Start/End: Complemental strand, 27215247 - 27214876
Alignment:
| Q |
20 |
cgaactggatgctccgacaacaatggaaagttcagctgtgccaccgccgattgtgcctctggtcaagtcagttgcaacggtgctggcgcaatcccaccag |
119 |
Q |
| |
|
||||| ||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |||||||||||||||||||||| |
|
|
| T |
27215247 |
cgaaccggatgcttcaacaacaatggaaagttcagctgtgccaccgccgattgtgcctctggtcaactcggttgcaatggtgctggcgcaatcccaccag |
27215148 |
T |
|
| Q |
120 |
caacattggtagaaataaccgtagcaacaaacgggggacaagatttctacgatgtgagcaatgtggatggattcaacgtaccaatgtcggtaacgccaca |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
27215147 |
caacattggtagaaataaccgtagcaacaaacgggggacaagatttctatgatgtgagcaatgtggatggattcaacgtgccaatgtctgtaacgccaca |
27215048 |
T |
|
| Q |
220 |
aggtgggagtggtgactgcaaaacctccagttgtccggggaacattaatggtgtgtgtccttcagaactccaagtgataggttctgatgggagtgtggtt |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||| |||| ||||||||||||||| ||||||||||||||| ||||||||||||||||| |
|
|
| T |
27215047 |
aggtgggagtggtgactgcaaaacctccagttgtccagggaacatcaatgttgtgtgtccttcagagctccaagtgataggtactgatgggagtgtggtt |
27214948 |
T |
|
| Q |
320 |
gcttgtaagagcgcttgtttggctttaaacgaagataaatattgttgtcgtggagattacaataccgaagaa |
391 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27214947 |
gcttgtaagagcgcttgtttggctttaaatgaagataaatattgttgtcgtggagattacaataccgaagaa |
27214876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 20 - 391
Target Start/End: Original strand, 27443654 - 27444025
Alignment:
| Q |
20 |
cgaactggatgctccgacaacaatggaaagttcagctgtgccaccgccgattgtgcctctggtcaagtcagttgcaacggtgctggcgcaatcccaccag |
119 |
Q |
| |
|
||||| ||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |||||||||||||||||||||| |
|
|
| T |
27443654 |
cgaaccggatgcttcaacaacaatggaaagttcagctgtgccaccgccgattgtgcctctggtcaactcggttgcaatggtgctggcgcaatcccaccag |
27443753 |
T |
|
| Q |
120 |
caacattggtagaaataaccgtagcaacaaacgggggacaagatttctacgatgtgagcaatgtggatggattcaacgtaccaatgtcggtaacgccaca |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
27443754 |
caacattggtagaaataaccgtagcaacaaacgggggacaagatttctaagatgtgagcaatgtggatggattcaacgtgccaatgtctgtaacgccaca |
27443853 |
T |
|
| Q |
220 |
aggtgggagtggtgactgcaaaacctccagttgtccggggaacattaatggtgtgtgtccttcagaactccaagtgataggttctgatgggagtgtggtt |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||| |||| ||||||||||||||| ||||||||||||||| ||||||||||||||||| |
|
|
| T |
27443854 |
aggtgggagtggtgactgcaaaacctccagttgtccagggaacatcaatgttgtgtgtccttcagagctccaagtgataggtactgatgggagtgtggtt |
27443953 |
T |
|
| Q |
320 |
gcttgtaagagcgcttgtttggctttaaacgaagataaatattgttgtcgtggagattacaataccgaagaa |
391 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27443954 |
gcttgtaagagcgcttgtttggctttaaatgaagataaatattgttgtcgtggagattacaataccgaagaa |
27444025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 20 - 391
Target Start/End: Complemental strand, 27221209 - 27220838
Alignment:
| Q |
20 |
cgaactggatgctccgacaacaatggaaagttcagctgtgccaccgccgattgtgcctctggtcaagtcagttgcaacggtgctggcgcaatcccaccag |
119 |
Q |
| |
|
||||| ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| |
|
|
| T |
27221209 |
cgaaccggatgcttcaacaacaatggaaagttcagctgtgccaccgccgattgtgcctctggtcaagtcggttgcaacggtgctggggcaatcccaccag |
27221110 |
T |
|
| Q |
120 |
caacattggtagaaataaccgtagcaacaaacgggggacaagatttctacgatgtgagcaatgtggatggattcaacgtaccaatgtcggtaacgccaca |
219 |
Q |
| |
|
||||||||||||||||||| ||||||||| ||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||| |
|
|
| T |
27221109 |
caacattggtagaaataacggtagcaacagacgggggacaagacttctacgatgtgagcaatgtggacggattcaacgtgccaatgtctgtaacgccaca |
27221010 |
T |
|
| Q |
220 |
aggtgggagtggtgactgcaaaacctccagttgtccggggaacattaatggtgtgtgtccttcagaactccaagtgataggttctgatgggagtgtggtt |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |||||||| |||||||| || ||| |||||||||||||| || |
|
|
| T |
27221009 |
aggtgggagtggtgactgcaaaacctccagttgtccagggaacattaatgttgtgtgcccttcagagctccaagttattggtactgatgggagtgtgatt |
27220910 |
T |
|
| Q |
320 |
gcttgtaagagcgcttgtttggctttaaacgaagataaatattgttgtcgtggagattacaataccgaagaa |
391 |
Q |
| |
|
|| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||| |||||| |||||| |
|
|
| T |
27220909 |
gcctgtaagagtgcttgtttggctttaaatgaagataaatattgttgtcgtggagatttcaatactgaagaa |
27220838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 20 - 391
Target Start/End: Complemental strand, 27207876 - 27207505
Alignment:
| Q |
20 |
cgaactggatgctccgacaacaatggaaagttcagctgtgccaccgccgattgtgcctctggtcaagtcagttgcaacggtgctggcgcaatcccaccag |
119 |
Q |
| |
|
||||||||||||||||||||||| |||| ||||||||| |||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
27207876 |
cgaactggatgctccgacaacaacggaaggttcagctgcgccaccgccgattgtgcctccggtcaagtcggttgcaacggtgctggcgcaatcccaccag |
27207777 |
T |
|
| Q |
120 |
caacattggtagaaataaccgtagcaacaaacgggggacaagatttctacgatgtgagcaatgtggatggattcaacgtaccaatgtcggtaacgccaca |
219 |
Q |
| |
|
||||| ||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||| ||||| ||||| || || ||||| |||| |||||| |
|
|
| T |
27207776 |
caacactggtagaaataacaatagcatccaacgggggacaagatttctacgatgtgagcaatgttgatgggttcaatgtgcccatgtccgtaatgccaca |
27207677 |
T |
|
| Q |
220 |
aggtgggagtggtgactgcaaaacctccagttgtccggggaacattaatggtgtgtgtccttcagaactccaagtgataggttctgatgggagtgtggtt |
319 |
Q |
| |
|
||||||||||||||||||||||||| | |||||||| |||||||||||| ||||||||||||||| ||||| ||||| |||||||||||||||||| || |
|
|
| T |
27207676 |
aggtgggagtggtgactgcaaaaccgctagttgtcctaggaacattaatgttgtgtgtccttcagagctccaggtgattggttctgatgggagtgtgttt |
27207577 |
T |
|
| Q |
320 |
gcttgtaagagcgcttgtttggctttaaacgaagataaatattgttgtcgtggagattacaataccgaagaa |
391 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| |||||| |
|
|
| T |
27207576 |
gcttgtaagagcgcttgtttggctttaaaggaagataaatattgttgtcgtggagatttcaatactgaagaa |
27207505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 37 - 389
Target Start/End: Complemental strand, 27410109 - 27409757
Alignment:
| Q |
37 |
caacaatggaaagttcagctgtgccaccgccgattgtgcctctggtcaagtcagttgcaacggtgctggcgcaatcccaccagcaacattggtagaaata |
136 |
Q |
| |
|
|||||| | |||||| || |||||||| |||||||||| ||||||||||| | ||||| |||||||||||||||||||||||||| || || ||||| |
|
|
| T |
27410109 |
caacaaagaaaagtttagttgtgccacagccgattgtgggtctggtcaagtggggtgcaatggtgctggcgcaatcccaccagcaactttagttgaaatt |
27410010 |
T |
|
| Q |
137 |
accgtagcaacaaacgggggacaagatttctacgatgtgagcaatgtggatggattcaacgtaccaatgtcggtaacgccacaaggtgggagtggtgact |
236 |
Q |
| |
|
||| | ||| |||| || |||||||||||||||||||||||||| || || || |||||||| ||||| | ||||| ||||||||||||| ||| | |
|
|
| T |
27410009 |
accatggcatcaaatggaggacaagatttctacgatgtgagcaacgttgacgggttcaacgtgccaatttttgtaactccacaaggtgggaatggccctt |
27409910 |
T |
|
| Q |
237 |
gcaaaacctccagttgtccggggaacattaatggtgtgtgtccttcagaactccaagtgataggttctgatgggagtgtggttgcttgtaagagcgcttg |
336 |
Q |
| |
|
||||| || | |||||||| | || || || | ||||||||| ||||||| ||||| | |||||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
27409909 |
gcaaagccgctagttgtccagcaaatatcaacgctgtgtgtcccgcagaacttcaagtaaaaggttctgatgggagtgtcgttgcttgtaagagtgcttg |
27409810 |
T |
|
| Q |
337 |
tttggctttaaacgaagataaatattgttgtcgtggagattacaataccgaag |
389 |
Q |
| |
|
|||||||| || |||| ||||||||||||||||| |||||||||||||| |
|
|
| T |
27409809 |
cttggcttttaatacagatcaatattgttgtcgtggaagttacaataccgaag |
27409757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 56 - 373
Target Start/End: Complemental strand, 27389134 - 27388817
Alignment:
| Q |
56 |
tgtgccaccgccgattgtgcctctggtcaagtcagttgcaacggtgctggcgcaatcccaccagcaacattggtagaaataaccgtagcaacaaacgggg |
155 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||| ||||| ||||| || || ||| |||| || | |
|
|
| T |
27389134 |
tgtgccactgccgattgtgcatctggtcaagttgcatgcaatggtgctggcgcaatcccaccagcaactttggttgaaattacagtggcatcaaatggag |
27389035 |
T |
|
| Q |
156 |
gacaagatttctacgatgtgagcaatgtggatggattcaacgtaccaatgtcggtaacgccacaaggtgggagtggtgactgcaaaacctccagttgtcc |
255 |
Q |
| |
|
||||||||||||||||||||||||| || || || |||||||| |||||||| ||||| |||||||| || ||||| || |||||| |||| || ||||| |
|
|
| T |
27389034 |
gacaagatttctacgatgtgagcaacgttgacggtttcaacgtgccaatgtccgtaactccacaaggcggaagtggcgattgcaaatcctctagctgtcc |
27388935 |
T |
|
| Q |
256 |
ggggaacattaatggtgtgtgtccttcagaactccaagtgataggttctgatgggagtgtggttgcttgtaagagcgcttgtttggctttaaacgaagat |
355 |
Q |
| |
|
| ||||| || ||||||||| | || || ||| | | |||||||||||| ||||| |||||||||||||| |||||||||||||| || ||| |
|
|
| T |
27388934 |
agcaaacatcaactctgtgtgtcccgcggagcttcaattaaaaggttctgatggaagtgtcgttgcttgtaagagtgcttgtttggcttttaataccgat |
27388835 |
T |
|
| Q |
356 |
aaatattgttgtcgtgga |
373 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
27388834 |
caatattgttgtcgtgga |
27388817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 259 - 346
Target Start/End: Complemental strand, 20952617 - 20952530
Alignment:
| Q |
259 |
gaacattaatggtgtgtgtccttcagaactccaagtgataggttctgatgggagtgtggttgcttgtaagagcgcttgtttggcttta |
346 |
Q |
| |
|
|||||||||| ||||||||||| ||| |||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||| |
|
|
| T |
20952617 |
gaacattaatattgtgtgtccttaagagctccaagtgaccggttctgatgggagtgtggtggcttgtaaaagcgcttgtttggcttta |
20952530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 107 - 181
Target Start/End: Complemental strand, 27454786 - 27454712
Alignment:
| Q |
107 |
gcaatcccaccagcaacattggtagaaataaccgtagcaacaaacgggggacaagatttctacgatgtgagcaat |
181 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || || || || || ||||||||||||| |||||||||||| |
|
|
| T |
27454786 |
gcaatcccaccagcaacattggtagaaataacggttacatcagacaggagacaagatttctatgatgtgagcaat |
27454712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 151 - 219
Target Start/End: Complemental strand, 20952716 - 20952648
Alignment:
| Q |
151 |
cgggggacaagatttctacgatgtgagcaatgtggatggattcaacgtaccaatgtcggtaacgccaca |
219 |
Q |
| |
|
||||||||||||||| || ||||||||||||||||| | ||||| || ||||||| |||||||||| |
|
|
| T |
20952716 |
cgggggacaagatttatatgatgtgagcaatgtggacaggttcaatgtgtcaatgtcaataacgccaca |
20952648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 207
Target Start/End: Original strand, 41457747 - 41457895
Alignment:
| Q |
59 |
gccaccgccgattgtgcctctggtcaagtcagttgcaacggtgctggcgcaatcccaccagcaacattggtagaaataaccgtagcaacaaacgggggac |
158 |
Q |
| |
|
||||| || ||||||| ||| || |||||| |||||| ||||| || ||| | |||||||||||||| | |||| || ||||| | | ||||| |||| |
|
|
| T |
41457747 |
gccactgctgattgtggctccggccaagtcgcttgcaatggtgccggtgcagttccaccagcaacattagcagaactacacgtagaagccaacggtggac |
41457846 |
T |
|
| Q |
159 |
aagatttctacgatgtgagcaatgtggatggattcaacgtaccaatgtc |
207 |
Q |
| |
|
|||| | ||||||| | |||||||| || || ||||||||||| ||||| |
|
|
| T |
41457847 |
aagactactacgatataagcaatgttgacgggttcaacgtacccatgtc |
41457895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University