View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5005_low_9 (Length: 397)
Name: NF5005_low_9
Description: NF5005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5005_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 11 - 383
Target Start/End: Complemental strand, 40063718 - 40063344
Alignment:
| Q |
11 |
acatcatcaaagcaaagttagtaccaattccaaccccagcctgcagatgagtgagttttgccaaactagcacgcctcaatataaactgtcccactccctt |
110 |
Q |
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| T |
40063718 |
acatcatcaaagcaaagttagtaccaattccaaccccagcctgcagatgagtgagttttgccaaactagcacgcctcaatataaactgtcccactccctt |
40063619 |
T |
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| Q |
111 |
cacatgtccttcactctctaccatcctttcatcccatacttttctcggttcaccccctcactccactattgcaaataaatcatcttaatacccacataac |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
40063618 |
cacatgtccttcactctctaccatcctttcatcccatacttttctctgttca-cccctcactccactattgcaaataaaccatcttaatacccacataac |
40063520 |
T |
|
| Q |
211 |
aattcatatcatccttcaccattctcattaatag-taatagtatttctcatttacgcttcagtagtgttggtcacatccattgattcattgcgtgcgtca |
309 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40063519 |
aattcatatcatccttcaccattctcattaatagttaatagtatttctcatttacgcttcagtagtgttggtcacatccattgattcattgcgtgcgtca |
40063420 |
T |
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| Q |
310 |
gtg--tatatatgtaagtaaaacctagctaccgtcacgtcatgttcatttatttttaatccataaataaacagagt |
383 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40063419 |
gtgtatatatatgtaagtaaaacctagctaccgtcacgtcatgttcatttatttttaatccataaataaacagagt |
40063344 |
T |
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