View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5006-Insertion-2 (Length: 1039)
Name: NF5006-Insertion-2
Description: NF5006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5006-Insertion-2 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 442; Significance: 0; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 7 - 531
Target Start/End: Complemental strand, 37309992 - 37309467
Alignment:
| Q |
7 |
ataaacaacttccattataagataagctcttttcttaaactctcgcaaatattgatacatgtgtgtttatattataagaacatagaatatgaatacaaaa |
106 |
Q |
| |
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|||||||||||| ||||| ||||| ||| ||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||| ||||| |
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| T |
37309992 |
ataaacaacttctattatgagatatgctattttcttaaactctctcaaatattgattcatgtgtgtttgtattataagaacatagaatatgaatgcaaaa |
37309893 |
T |
|
| Q |
107 |
tctgctattaccatcttgagttgaaagcgcttcagccagtttagttttctcttcttccttcttgcggaagtatctgacatatatatagataactaataat |
206 |
Q |
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||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
37309892 |
tctactattaccatcttgagttgaaagtgcttcagccagtttagttttctcttcttccttctttttgaagtatctgacatatatatagataactaataat |
37309793 |
T |
|
| Q |
207 |
agaagtccaaatattcctgctattattataaccacagttgcacccttagcaagacctgttcgtatagaaccagctttaaattcaggcattgacctttttt |
306 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |
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| T |
37309792 |
agaagtccaaatattcctgctattattatacccacagttgcacccttagcaagacctgttcgtatagaacaaactttaaattcaggcattgacctttttt |
37309693 |
T |
|
| Q |
307 |
acattctcatattgtttgtgaac-aagaacaaccatcaagctaaaaacataatcatcataatatacctacctgatctgcaagagggaaaaaaggaaaatg |
405 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37309692 |
acattctcatattgtttgtgaacaaagaacaaccatcaagctaaaaacataatcatcataatatacctacctgatctgcaagagggaaaaaaggaaaatg |
37309593 |
T |
|
| Q |
406 |
aaagttagaaaactagaatcaaacatgaagcaatacatacttctataaagcattcaaaatgaaaagtgagatagtcaaaattacccacctaggatacaag |
505 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| |
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| T |
37309592 |
aaagttagaaaactagaatcaaacatgaagcaatacatgcttctataaagcattcaaaatgaaaagcgagataatcaaaattacccacctaggatacaag |
37309493 |
T |
|
| Q |
506 |
ggaacataatctccattttgatctgc |
531 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
37309492 |
ggaacataatctccattttgatctgc |
37309467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 307; E-Value: 1e-172
Query Start/End: Original strand, 581 - 966
Target Start/End: Complemental strand, 37309430 - 37309039
Alignment:
| Q |
581 |
tagcatatatactttgaagaagaataaaagagtaacttagcaatttactacttataccaagtaatttgatcacaacatcaaaaggtgatgaaacaaaagg |
680 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||| |
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| T |
37309430 |
tagcatatatactttgaagaagaataaaagagtaacttagcaatttactacttatacaaagtactttgatcacaacatcaaaaggtggtgaaacaaaagg |
37309331 |
T |
|
| Q |
681 |
agag--tatacatacctcttcctggaatgaacactatcccacttccattgctgaaattgacaccagaattgtaactctgtatcaacccttcatcaagatt |
778 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37309330 |
agagagtatacatacctcttcctggaatgaacactatcccacttccattgctgaaattgacaccagaattgtaactctgtatcaacccttcatcaagatt |
37309231 |
T |
|
| Q |
779 |
aggttggtttgcaatcttctgaagagtgtcatcagtcctgagtggataggtaataaataagccataatcttttgaaatctggctgttcccacaagaacaa |
878 |
Q |
| |
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|| |||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
37309230 |
agattggtttgcaatcttctgaagagtatcatcagttctgagtggataggtaataaacaagccataatcttttgaaatctggctgttcccacaagaacaa |
37309131 |
T |
|
| Q |
879 |
ttgacagttacattaacccttagccttagcaggtatatgatc-tgatcat-actattgaactttt--caaagctc-actgtagtcaaacttgc |
966 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||||||| ||||||| |||||||||||||| ||||||| ||||||||||||||||| |
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| T |
37309130 |
ttgacagttacattaa-ccttagccttagcaggtatatgatcttgatcataactattgaactttttcaaaagctcaactgtagtcaaacttgc |
37309039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 106; E-Value: 2e-52
Query Start/End: Original strand, 686 - 919
Target Start/End: Complemental strand, 37230223 - 37229991
Alignment:
| Q |
686 |
atacatacctcttcctggaatgaacactatcccacttccattgctgaaattgacaccagaattgtaactctgtatcaacccttcatcaagattaggttgg |
785 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||| || | |||| || | |||| ||||||||||||||||| || || | |
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| T |
37230223 |
atacatacctcttcctggaatgaacactatcccacttcctttgctgaaattggcatcttgattgaaattttgtaacaacccttcatcaagatcagctttg |
37230124 |
T |
|
| Q |
786 |
tttgcaatcttctgaagagtgtcatcagtcctgagtggataggtaataaataagccataatcttttgaaatctggctgttcccacaagaacaattgacag |
885 |
Q |
| |
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| ||||| ||| |||||| ||||||| ||||||||||||||||| ||| |||||| ||||||||||||||||||| |||||||| |||||| | |||| |
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| T |
37230123 |
gtcgcaattttcgcaagagtatcatcagacctgagtggataggtaacaaacaagccaaaatcttttgaaatctggctattcccacacgaacaaattacag |
37230024 |
T |
|
| Q |
886 |
ttacattaacccttagccttagcaggtatatgat |
919 |
Q |
| |
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| ||||||| |||||||||| |||||||||||| |
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| T |
37230023 |
tgacattaa-tcttagccttaacaggtatatgat |
37229991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 106; E-Value: 2e-52
Query Start/End: Original strand, 686 - 919
Target Start/End: Complemental strand, 37237141 - 37236909
Alignment:
| Q |
686 |
atacatacctcttcctggaatgaacactatcccacttccattgctgaaattgacaccagaattgtaactctgtatcaacccttcatcaagattaggttgg |
785 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||| || | |||| || | ||||||||||||||||||||| || || | |
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|
| T |
37237141 |
atacatacctcttcctggaatgaacactatcccacttcctatgctgaaattggcatcttgattgaaattttgtatcaacccttcatcaagaccagctttg |
37237042 |
T |
|
| Q |
786 |
tttgcaatcttctgaagagtgtcatcagtcctgagtggataggtaataaataagccataatcttttgaaatctggctgttcccacaagaacaattgacag |
885 |
Q |
| |
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| ||||| ||| |||||| ||||||| ||||||||||||||||| ||| |||||||||||||||||||||||||| |||||||| |||||| | |||| |
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| T |
37237041 |
gtcgcaattttcgcaagagtatcatcagacctgagtggataggtaacaaacaagccataatcttttgaaatctggctattcccacatgaacaaattacag |
37236942 |
T |
|
| Q |
886 |
ttacattaacccttagccttagcaggtatatgat |
919 |
Q |
| |
|
| ||||||| |||||||||| |||||||||||| |
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| T |
37236941 |
tgacattaa-tcttagccttaacaggtatatgat |
37236909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 144 - 332
Target Start/End: Complemental strand, 37237969 - 37237777
Alignment:
| Q |
144 |
agtttagttttctcttcttccttcttgcggaagtatctgacatatatatagataactaataatagaagtccaaatattcctgctattattataaccacag |
243 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| || |||||||||||||||| |||||||||||||||||||||||||| || |||| | |||| |
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|
| T |
37237969 |
agtttagttttctcttcttccttcttttggaagtatttggcatatatatagataacaaataatagaagtccaaatattcctgccatagctataccaacag |
37237870 |
T |
|
| Q |
244 |
ttgcacccttagcaagacctgttcgtatagaaccagctttaaattc-----aggcattgaccttttttacattctcatattgtttgtgaacaag |
332 |
Q |
| |
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|| ||||||||||| ||||| | ||| |||||| ||||| || | ||||||||||||| | |||||||||||| |||||||||||| |
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| T |
37237869 |
ctgaacccttagcaatacctgcttatattgaaccaaatttaagctcacaggaagcattgaccttttgtccattctcatatt-tttgtgaacaag |
37237777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 657 - 736
Target Start/End: Original strand, 33596481 - 33596560
Alignment:
| Q |
657 |
atcaaaaggtgatgaaacaaaaggagagtatacatacctcttcctggaatgaacactatcccacttccattgctgaaatt |
736 |
Q |
| |
|
||||||||||||| || |||| |||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
33596481 |
atcaaaaggtgatagaagaaaatgagaaaatacatacctcttcctggaatgaacactatcccacttcctttgctgaaatt |
33596560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 144 - 204
Target Start/End: Original strand, 33595725 - 33595785
Alignment:
| Q |
144 |
agtttagttttctcttcttccttcttgcggaagtatctgacatatatatagataactaata |
204 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| || |||||||||||||||| |||| |
|
|
| T |
33595725 |
agtttagttttctcttcttccttcttttggaagtatttggcatatatatagataacaaata |
33595785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 400 - 531
Target Start/End: Original strand, 33595925 - 33596062
Alignment:
| Q |
400 |
aaaatgaaagttagaaaactagaatcaaac---atgaagcaatacatacttct---ataaagcattcaaaatgaaaagtgagatagtcaaaattacccac |
493 |
Q |
| |
|
|||||||||||||||||| ||||| |||| ||||||||||| ||||||| |||| ||| ||||| | ||| ||||| | |||| |||| || |
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|
| T |
33595925 |
aaaatgaaagttagaaaaatagaaccaaattatatgaagcaatatttacttcttatataatgcactcaaagtccaaattgagacaatcaatgttacttac |
33596024 |
T |
|
| Q |
494 |
ctaggatacaagggaacataatctccattttgatctgc |
531 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
33596025 |
ctaggatacaagggaacatcatctccattttgatctgc |
33596062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 394 - 531
Target Start/End: Complemental strand, 37237718 - 37237574
Alignment:
| Q |
394 |
aaaaggaaaatgaaagttagaaaactagaatcaa---acatgaagcaatacata---cttctataaagcattc-aaaatgaaaagtgagatagtcaaaat |
486 |
Q |
| |
|
|||| ||||||||||||||||||| || || ||| | ||||||||||| || |||||||||| ||||| |||||||||| ||||||| |||| | |
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|
| T |
37237718 |
aaaaagaaaatgaaagttagaaaaatataaccaaattatatgaagcaatatttacttcttctataaatcattcaaaaatgaaaattgagataatcaatgt |
37237619 |
T |
|
| Q |
487 |
tacccacctaggatacaagggaacataatctccattttgatctgc |
531 |
Q |
| |
|
||| |||||| |||||| |||| | ||| ||||||||||||||| |
|
|
| T |
37237618 |
tacttacctagaatacaaaggaaaaaaatgtccattttgatctgc |
37237574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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