View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5006-Insertion-3 (Length: 689)

Name: NF5006-Insertion-3
Description: NF5006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5006-Insertion-3
NF5006-Insertion-3
[»] chr4 (7 HSPs)
chr4 (8-684)||(9237776-9238454)
chr4 (11-243)||(9259117-9259349)
chr4 (8-242)||(9165710-9165945)
chr4 (20-242)||(9173480-9173692)
chr4 (498-672)||(26905123-26905298)
chr4 (243-291)||(9165642-9165689)
chr4 (243-291)||(9173713-9173760)
[»] scaffold1064 (1 HSPs)
scaffold1064 (8-672)||(1777-2417)
[»] chr2 (4 HSPs)
chr2 (515-685)||(38099340-38099511)
chr2 (521-684)||(302121-302284)
chr2 (525-612)||(39190839-39190925)
chr2 (569-684)||(3461568-3461684)
[»] chr8 (3 HSPs)
chr8 (515-684)||(6414385-6414556)
chr8 (392-498)||(26794170-26794277)
chr8 (525-688)||(37786815-37786978)
[»] scaffold0019 (1 HSPs)
scaffold0019 (356-498)||(59355-59499)
[»] chr5 (4 HSPs)
chr5 (535-598)||(31000575-31000638)
chr5 (400-498)||(14234185-14234285)
chr5 (569-684)||(14233898-14234014)
chr5 (385-431)||(17156474-17156520)
[»] chr3 (1 HSPs)
chr3 (400-491)||(51810651-51810743)
[»] chr7 (2 HSPs)
chr7 (512-612)||(30380507-30380606)
chr7 (525-611)||(296930-297016)
[»] chr6 (3 HSPs)
chr6 (531-668)||(29010973-29011111)
chr6 (532-684)||(28248943-28249095)
chr6 (527-638)||(11186979-11187090)
[»] scaffold0038 (1 HSPs)
scaffold0038 (532-684)||(49105-49257)
[»] chr1 (1 HSPs)
chr1 (569-672)||(50778361-50778465)


Alignment Details
Target: chr4 (Bit Score: 531; Significance: 0; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 531; E-Value: 0
Query Start/End: Original strand, 8 - 684
Target Start/End: Original strand, 9237776 - 9238454
Alignment:
Q  8 atgtccctatagaccttatgtttatgtatcgaacattatcgaaaatatttgaattgtgaaatattatagctcattttttatttcttgttattttaggcaa 107  Q
    ||||||||||||||||||| || |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9237776 atgtccctatagaccttatcttcatgtatcgaacattatcgaaaagatttgaattgtgaaatattatagctcattttttatttcttgttattttaggcaa 9237875  T
Q  108 agccaaatatttcagagttaatcgcagagagagattttcttaaggaattaaataaaaggcttcgacaagaactggtatgccattcatatcatgatcatag 207  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| || | |||||||||||||||||||||| |||||||||||    
T  9237876 agccaaatatttcagagttaatcgcagagagagaatttcttaaggaattatataaaaggcatcaagaagaactggtatgccattcataccatgatcatag 9237975  T
Q  208 tttggtgatcttgaatattttgtcgtgtgatcttgaatatttgtcatgtgataagtttattcaactatttacataaacttgattannnnnnnng-tcaag 306  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| ||||          | |||    
T  9237976 tttggtgatcttgaatattttgtcgtgtgatcttgaatatttgtcatgcgataaatttattcaactatttacataaacttaattatttttttttattaag 9238075  T
Q  307 aagcttaatggctagaaatttaccttgaagtgtccaagagtcgaaccacttagaacataaattgtgttcttatatgtggcagaaatgcttatccaaataa 406  Q
    ||| ||||||||||||||||||||||||||||||  ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  9238076 aagtttaatggctagaaatttaccttgaagtgtctgagagtcgaaccccttagaacataaattgtgttcttatatgtagcagaaatgcttatccaaataa 9238175  T
Q  407 gctgttttagcaagatgacagaaattgaaaaataaagttgtaaaactgaaagagaagaatagatattatgcttgcaatgtgaatcacattaatattatat 506  Q
     || ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  9238176 actattttagcaagatgacagaaatagaaaaataaagttgtaaaactgaaagagaagaatagagattatgcttgcaatgtgaatcacattaatattatat 9238275  T
Q  507 ctaaccaattatgtattcatattctaatactcccccttaatttataactgctgaatgttcacaacaccaagttttttcctcaaaaattcaaatatgtcaa 606  Q
    ||||||||| ||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9238276 ctaaccaatgatgtattcatattctaatacttccccttaattcataactgctgaatgttcacaacaccaagttttttcctcaaaaattcaaatatgtcaa 9238375  T
Q  607 gcttcaaagtc-ttgtaaagccatctgcaagctgcaattatgtaggacaatactgcaactcaatcataccgttagtcac 684  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  9238376 gcttcaaagtctttgtaaagccatctgcaagctgcaattatgtaggacaatactgcaactcaatcataccattagtcac 9238454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 11 - 243
Target Start/End: Original strand, 9259117 - 9259349
Alignment:
Q  11 tccctatagaccttatgtttatgtatcgaacattatcgaaaatatttgaattgtgaaatattatagctcattttttatttcttgttattttaggcaaagc 110  Q
    ||||||| ||||||| ||| |||||||||  ||||| ||||| ||||||||| ||||||||| | |||||||||||||||||||| |||||||||||||     
T  9259117 tccctattgaccttacgttcatgtatcgattattattgaaaagatttgaattctgaaatattgttgctcattttttatttcttgtcattttaggcaaagg 9259216  T
Q  111 caaatatttcagagttaatcgcagagagagattttcttaaggaattaaataaaaggcttcgacaagaactggtatgccattcatatcatgatcatagttt 210  Q
       | ||||| ||||||| || ||||||||||| ||||||| |   ||||||||||||||   ||| ||||||| |||||||| | ||||||||||| ||    
T  9259217 atcaaatttcggagttaaccgaagagagagattatcttaagaaggaaaataaaaggcttcaggaagcactggtacgccattcacaacatgatcatagctt 9259316  T
Q  211 ggtgatcttgaatattttgtcgtgtgatcttga 243  Q
    ||| |||||||||||||||||| ||||||||||    
T  9259317 ggtaatcttgaatattttgtcgggtgatcttga 9259349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 8 - 242
Target Start/End: Complemental strand, 9165945 - 9165710
Alignment:
Q  8 atgtccctatagaccttatgtttatgtatcgaacattatcgaaaatatttgaattgtgaaa-tattatagctcattttttatttcttgttattttaggca 106  Q
    |||||||||| ||||||||||| |||||||||  ||||||||||| ||||||||| ||||| |||| | | | |||||| ||||||||||| |||||| |    
T  9165945 atgtccctattgaccttatgttcatgtatcgattattatcgaaaagatttgaattctgaaagtattgttgttaatttttcatttcttgttactttaggaa 9165846  T
Q  107 aagccaaatatttcagagttaatcgcagagagagattttcttaaggaattaaataaaaggcttcgacaagaactggtatgccattcatatcatgatcata 206  Q
    |||  | | |||||||||||||  | ||||||||||| ||||||| |   ||||||||||||||  |||| |||||||||||||||||| |||||||||     
T  9165845 aagaaacaaatttcagagttaactgaagagagagattatcttaagaagggaaataaaaggcttcagcaagcactggtatgccattcataacatgatcatt 9165746  T
Q  207 gtttggtgatcttgaatattttgtcgtgtgatcttg 242  Q
    ||| ||| ||||| ||||| ||||||||| ||||||    
T  9165745 gttcggtaatcttaaatatcttgtcgtgttatcttg 9165710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 20 - 242
Target Start/End: Original strand, 9173480 - 9173692
Alignment:
Q  20 accttatgtttatgtatcgaacattatcgaaaatatttgaattgtgaaatattatagctcattttttatttcttgttattttaggcaaagccaaatattt 119  Q
    ||||||||||||||||||||  ||||||||||||||||||||| ||||||||| |  ||||||||||||| |||||||||||||||||||  | | ||||    
T  9173480 accttatgtttatgtatcgattattatcgaaaatatttgaattctgaaatattgtttctcattttttattccttgttattttaggcaaaggaacaaattt 9173579  T
Q  120 cagagttaatcgcagagagagattttcttaaggaattaaataaaaggcttcgacaagaactggtatgccattcatatcatgatcatagtttggtgatctt 219  Q
    |||||||||  | ||||||||||| |||||||          |||||||||  |||| |||||||||||||||||| ||||||||| ||| ||| |||||    
T  9173580 cagagttaactgaagagagagattatcttaag----------aaaggcttcagcaagcactggtatgccattcataacatgatcattgttcggtaatctt 9173669  T
Q  220 gaatattttgtcgtgtgatcttg 242  Q
     ||||| ||||||||| ||||||    
T  9173670 aaatatcttgtcgtgtaatcttg 9173692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 498 - 672
Target Start/End: Complemental strand, 26905298 - 26905123
Alignment:
Q  498 atattatatctaaccaattatgtattcatattctaatactcccccttaatttataactgctgaatgttcacaacaccaagttttttcctcaaaaattcaa 597  Q
    ||||||||||| | || ||||||||| |||| |||||||||||| |||||| ||||||||| ||| || |||||||||||||| ||||| ||||||| ||    
T  26905298 atattatatctcaacagttatgtattaatatactaatactccccattaattcataactgctaaatattaacaacaccaagtttcttccttaaaaatttaa 26905199  T
Q  598 atatgtcaagcttcaaagtc-ttgtaaagccatctgcaagctgcaattatgtaggacaatactgcaactcaatcat 672  Q
    || ||||||||||||||| | |||||||||||  ||||||||||| || | |||||||||| || | |||||||||    
T  26905198 atttgtcaagcttcaaagcctttgtaaagccacatgcaagctgcagttctataggacaataatgtagctcaatcat 26905123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 243 - 291
Target Start/End: Complemental strand, 9165689 - 9165642
Alignment:
Q  243 aatatttgtcatgtgataagtttattcaactatttacataaacttgatt 291  Q
    |||| |||||||||| |||||| ||||||| ||||||||||||||||||    
T  9165689 aataattgtcatgtgttaagtt-attcaaccatttacataaacttgatt 9165642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 243 - 291
Target Start/End: Original strand, 9173713 - 9173760
Alignment:
Q  243 aatatttgtcatgtgataagtttattcaactatttacataaacttgatt 291  Q
    |||||| |||||||| |||||| |||||||||||||||| |||||||||    
T  9173713 aatattggtcatgtgttaagtt-attcaactatttacatcaacttgatt 9173760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1064 (Bit Score: 443; Significance: 0; HSPs: 1)
Name: scaffold1064
Description:

Target: scaffold1064; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 8 - 672
Target Start/End: Original strand, 1777 - 2417
Alignment:
Q  8 atgtccctatagaccttatgtttatgtatcgaacattatcgaaaatatttgaattgtgaaatattatagctcattttttatttcttgttattttaggcaa 107  Q
    |||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1777 atgtccctatagaccttatgtttatgtatccaacattatcgaaaagatttgaattgtgaaatattatagctcattttttatttcttgttattttaggcaa 1876  T
Q  108 agccaaatatttcagagttaatcgcagagagagattttcttaaggaattaaataaaaggcttcgacaagaactggtatgccattcatatcatgatcatag 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| |||||||||||    
T  1877 agccaaatatttcagagttaatcgcagagagagattttcttaaggaattaaataaaaggcatcaacaagaactggtatgccattcataccatgatcatag 1976  T
Q  208 tttggtgatcttgaatattttgtcgtgtgatcttgaatatttgtcatgtgataagtttattcaactatttacataaacttgattannnnnnnngtcaaga 307  Q
    |||||                      |||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||    
T  1977 tttgg----------------------tgatcttgaatatttgtcatgtgataagtttattcaactatttacataaacttgatt-ttttttttgtcaaga 2053  T
Q  308 agcttaatggctagaaatttaccttgaagtgtccaagagtcgaaccacttagaacataaattgtgttcttatatgtggcagaaatgcttatccaaataag 407  Q
      |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||  | ||| |||||||||||||||||||    
T  2054 t-cttaatggctagaaatttaccttgaagtgtccgagagtcgaaccccttagaacataaattgtgttcttatacatagcataaatgcttatccaaataag 2152  T
Q  408 ctgttttagcaagatgacagaaattgaaaaataaagttgtaaaactgaaagagaagaatagatattatgcttgcaatgtgaatcacattaatattatatc 507  Q
    |||||||||||||| || |||||| |||||||||||||||||||||||||||||| | |||| ||||||||| ||||||||||| |||||||||||||||    
T  2153 ctgttttagcaagacgagagaaatagaaaaataaagttgtaaaactgaaagagaata-tagagattatgcttacaatgtgaatctcattaatattatatc 2251  T
Q  508 taaccaattatgtattcatattctaatactcccccttaatttataactgctgaatgttcacaacaccaagttttttcctcaaaaattcaaatatgtcaag 607  Q
    |||||||||||||||| |||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |||||| |||||    
T  2252 taaccaattatgtattaatattctaatactcccccttaattcataactgcttaatgttcacaacaccaagttttttcctcaaaaattaaaatatttcaag 2351  T
Q  608 cttcaaagtc-ttgtaaagccatctgcaagctgcaattatgtaggacaatactgcaactcaatcat 672  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2352 cttcaaagtctttgtaaagccatctgcaagctgcaattatgtaggacaatactgcaactcaatcat 2417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 96; Significance: 1e-46; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 515 - 685
Target Start/End: Original strand, 38099340 - 38099511
Alignment:
Q  515 ttatgtattcatattctaatactcccccttaatttataactgctgaatgttcacaacaccaagttttttcctcaaaaattcaaatatgtcaagcttcaaa 614  Q
    ||||||||| ||||||||| |||||||||||||| |||| ||||||||||| |||||||||||||| ||||||||||||||||||||| |||||||||||    
T  38099340 ttatgtattaatattctaacactcccccttaattcataattgctgaatgttaacaacaccaagtttcttcctcaaaaattcaaatatgccaagcttcaaa 38099439  T
Q  615 gtc-ttgtaaagccatctgcaagctgcaattatgtaggacaatactgcaactcaatcataccgttagtcact 685  Q
    | | |||||||||||| ||| |||| ||||| |||||||||||| || |  ||||||||||| |||||||||    
T  38099440 gcctttgtaaagccatatgctagctacaattctgtaggacaatattgtagttcaatcataccattagtcact 38099511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 521 - 684
Target Start/End: Complemental strand, 302284 - 302121
Alignment:
Q  521 attcatattctaatactcccccttaatttataactgctgaatgttcacaacaccaagttttttcctcaaaaattcaaatatgtcaagcttcaaag-tctt 619  Q
    |||||||||| ||||||||||||||||  ||||||| ||||| || | |||||| | ||| |||||||| ||||||||| ||||||||||||  | | ||    
T  302284 attcatattccaatactcccccttaatc-ataactgttgaatattaaaaacacctaatttcttcctcaagaattcaaatctgtcaagcttcattgctttt 302186  T
Q  620 gtaaagccatctgcaagctgcaattatgtaggacaatactgcaactcaatcataccgttagtcac 684  Q
    ||||| ||||| ||||| || | || ||| || || || |||| ||||||||| || ||||||||    
T  302185 gtaaaaccatcagcaagttgtagttttgtggggcagtagtgcagctcaatcattccattagtcac 302121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 525 - 612
Target Start/End: Original strand, 39190839 - 39190925
Alignment:
Q  525 atattctaatactcccccttaatttataactgctgaatgttcacaacaccaagttttttcctcaaaaattcaaatatgtcaagcttca 612  Q
    |||||||||||||||||||||||  |||||||||| || || | |||||| | ||| |||||||| ||||||||| ||||||||||||    
T  39190839 atattctaatactcccccttaatc-ataactgctgcatattaaaaacacctaatttcttcctcaagaattcaaatctgtcaagcttca 39190925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 569 - 684
Target Start/End: Complemental strand, 3461684 - 3461568
Alignment:
Q  569 aacaccaagttttttcctcaaaaattcaaatatgtcaagcttcaaagtc-ttgtaaagccatctgcaagctgcaattatgtaggacaatactgcaactca 667  Q
    |||||||||||  || ||||| |||||||||||||||||||| |  | | ||||||| ||||| ||||| |||| || ||| || ||||| |||| ||||    
T  3461684 aacaccaagttcctttctcaagaattcaaatatgtcaagctttactgcctttgtaaaaccatcagcaagttgcagttctgtggggcaatagtgcagctca 3461585  T
Q  668 atcataccgttagtcac 684  Q
    ||||| || ||||||||    
T  3461584 atcattccattagtcac 3461568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 84; Significance: 1e-39; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 515 - 684
Target Start/End: Complemental strand, 6414556 - 6414385
Alignment:
Q  515 ttatgtattcatattctaatactccccc-ttaatttataactgctgaatgttcacaacaccaagttttttcctcaaaaattcaaatatgtcaagcttcaa 613  Q
    ||||||||| | |||||||||||||||| |||||| |||||||||||||||| |||||| ||||||| |||||||||| || |||| | |||||||||||    
T  6414556 ttatgtattaacattctaatactccccccttaattaataactgctgaatgttaacaacaacaagtttcttcctcaaaagtttaaatctatcaagcttcaa 6414457  T
Q  614 agtc-ttgtaaagccatctgcaagctgcaattatgtaggacaatactgcaactcaatcataccgttagtcac 684  Q
    || | ||||||| ||||||||||||||||||| ||||||||| || |||||||||||||  || ||||||||    
T  6414456 agcctttgtaaaaccatctgcaagctgcaattctgtaggacagtaatgcaactcaatcactccattagtcac 6414385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 392 - 498
Target Start/End: Original strand, 26794170 - 26794277
Alignment:
Q  392 tgcttatccaaataagctgttttagcaagatgacagaaattgaaaaataaagttgtaaaactgaaagagaagaat--agatattatgcttgcaatgtgaa 489  Q
    ||||||| ||||||||||||||||||||||||| | |||| | |||| |||  ||||||||||||||||||||||  ||| |||||||||||||||||||    
T  26794170 tgcttattcaaataagctgttttagcaagatgagaaaaatagcaaaacaaa-ctgtaaaactgaaagagaagaatagagagattatgcttgcaatgtgaa 26794268  T
Q  490 tcacattaa 498  Q
    || ||||||    
T  26794269 tctcattaa 26794277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 525 - 688
Target Start/End: Original strand, 37786815 - 37786978
Alignment:
Q  525 atattctaatactcccccttaatttataactgctgaatgttcacaacaccaagttttttcctcaaaaattcaaatatgtcaagcttcaaag-tcttgtaa 623  Q
    |||||| ||||||||||||||||  ||||||||||||| || | |||||| | ||| |||||||| ||||||||| ||||||||||||  | | ||||||    
T  37786815 atattccaatactcccccttaatc-ataactgctgaatattaaaaacacctaatttattcctcaagaattcaaatctgtcaagcttcactgcttttgtaa 37786913  T
Q  624 agccatctgcaagctgcaattatgtaggacaatactgcaactcaatcataccgttagtcacttgc 688  Q
    | ||||| ||||| || | || ||| || || || |||| ||||||||| || ||||||||||||    
T  37786914 aaccatcagcaagttgtagttctgtggggcagtagtgcagctcaatcattccattagtcacttgc 37786978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 70; Significance: 3e-31; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 356 - 498
Target Start/End: Original strand, 59355 - 59499
Alignment:
Q  356 ttagaacataaattgtgttcttatatgtggcagaaatgcttatccaaataagctgttttagcaagatgacagaaattgaaaaataaagttgtaaaactga 455  Q
    ||||||||||||||||||||||||  |  | | || |||||||  ||||||| |||||||||||||||| |||||| | |||||||||||||||||||||    
T  59355 ttagaacataaattgtgttcttatgcgcagaaaaagtgcttatgtaaataagttgttttagcaagatgagagaaatagcaaaataaagttgtaaaactga 59454  T
Q  456 aagagaagaataga--tattatgcttgcaatgtgaatcacattaa 498  Q
    || |||||||||||   ||||||||||||||||||||| ||||||    
T  59455 aaaagaagaatagagtgattatgcttgcaatgtgaatctcattaa 59499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 535 - 598
Target Start/End: Complemental strand, 31000638 - 31000575
Alignment:
Q  535 actcccccttaatttataactgctgaatgttcacaacaccaagttttttcctcaaaaattcaaa 598  Q
    |||||||||||||| |||||||||||||||| | |||| ||||||| |||||||||||||||||    
T  31000638 actcccccttaattcataactgctgaatgttaaaaacatcaagtttcttcctcaaaaattcaaa 31000575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 400 - 498
Target Start/End: Complemental strand, 14234285 - 14234185
Alignment:
Q  400 caaataagctgttttagcaagatgacagaaattgaaaaataaagttgtaaaactgaaagagaagaat--agatattatgcttgcaatgtgaatcacatta 497  Q
    |||||||| |||||||||||||||| | |||| | |||||||| |   |||||||||||||||||||  ||| |||||||||||||| |||||| |||||    
T  14234285 caaataagatgttttagcaagatgagaaaaatagcaaaataaactgtaaaaactgaaagagaagaatagagacattatgcttgcaatttgaatctcatta 14234186  T
Q  498 a 498  Q
    |    
T  14234185 a 14234185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 569 - 684
Target Start/End: Complemental strand, 14234014 - 14233898
Alignment:
Q  569 aacaccaagttttttcctcaaaaattcaaatatgtcaagcttcaaagtctt-gtaaagccatctgcaagctgcaattatgtaggacaatactgcaactca 667  Q
    |||||||||||| ||||| |||||||||||| ||||||| || |  | ||| ||||| ||||||||||| ||||  |  || |||||||| |||| ||||    
T  14234014 aacaccaagtttcttcctaaaaaattcaaatctgtcaagttttactgccttagtaaaaccatctgcaagttgcagctcagtgggacaatattgcacctca 14233915  T
Q  668 atcataccgttagtcac 684  Q
    ||||| || ||||||||    
T  14233914 atcattccattagtcac 14233898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 385 - 431
Target Start/End: Original strand, 17156474 - 17156520
Alignment:
Q  385 gcagaaatgcttatccaaataagctgttttagcaagatgacagaaat 431  Q
    |||||| ||||||| || |||||||||||||||||||||| ||||||    
T  17156474 gcagaagtgcttatgcagataagctgttttagcaagatgagagaaat 17156520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 400 - 491
Target Start/End: Complemental strand, 51810743 - 51810651
Alignment:
Q  400 caaataagctgttttagcaagatgacagaaattgaaaaataaagttgtaaaactgaaagagaagaata--gatattatgcttgcaatgtgaatc 491  Q
    |||||||| |||||||||||||||  | |||| | ||||||||  |||||| ||||||||||||||||  ||||||||||||||||||||||||    
T  51810743 caaataagttgttttagcaagatgtgaaaaatagcaaaataaaactgtaaa-ctgaaagagaagaataaagatattatgcttgcaatgtgaatc 51810651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 512 - 612
Target Start/End: Complemental strand, 30380606 - 30380507
Alignment:
Q  512 caattatgtattcatattctaatactcccccttaatttataactgctgaatgttcacaacaccaagttttttcctcaaaaattcaaatatgtcaagcttc 611  Q
    |||||||  ||| |||||||||||||  ||||||||  ||||||| ||||  |  | |||||||||||||||||||||||||| ||||||||||||||||    
T  30380606 caattattgattaatattctaatactttcccttaatc-ataactgttgaacatcaaaaacaccaagttttttcctcaaaaattaaaatatgtcaagcttc 30380508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 525 - 611
Target Start/End: Complemental strand, 297016 - 296930
Alignment:
Q  525 atattctaatactcccccttaatttataactgctgaatgttcacaa-caccaagttttttcctcaaaaattcaaatatgtcaagcttc 611  Q
    |||||||||||||||||||||||  ||||||||||||| || | || |||| | ||| |||||||| ||||||||| |||||||||||    
T  297016 atattctaatactcccccttaatc-ataactgctgaatattaaaaaacacctaatttcttcctcaagaattcaaatgtgtcaagcttc 296930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.000000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 531 - 668
Target Start/End: Original strand, 29010973 - 29011111
Alignment:
Q  531 taatactcccccttaatttataactgctgaatgttcacaacaccaagttttttcctcaaaaattcaaatatgtcaagcttcaaag-tcttgtaaagccat 629  Q
    |||||||||  ||||||| ||||||| |||||  | | |||||||||||| ||||| ||||| | |||| ||||||| ||||||| | | ||||| ||||    
T  29010973 taatactccatcttaattcataactgttgaatactgaaaacaccaagtttcttcctaaaaaacttaaatttgtcaagtttcaaagctttagtaaaaccat 29011072  T
Q  630 ctgcaagctgcaattatgtaggacaatactgcaactcaa 668  Q
     |||||| |||| || |||||||||| |||||| |||||    
T  29011073 atgcaagttgcagttctgtaggacaaaactgcagctcaa 29011111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 532 - 684
Target Start/End: Complemental strand, 28249095 - 28248943
Alignment:
Q  532 aatactcccccttaatttataactgctgaatgttcacaacaccaagttttttcctcaaaaattcaaatatgtcaagcttcaaag-tcttgtaaagccatc 630  Q
    ||||||||||||||||  |||||| |||||| || | |||||| | ||| |||||||| ||||||||| ||||||||||||  | | ||||||| |||||    
T  28249095 aatactcccccttaatc-ataactactgaatattaagaacacctaatttcttcctcaagaattcaaatttgtcaagcttcactgcttttgtaaaaccatc 28248997  T
Q  631 tgcaagctgcaattatgtaggacaatactgcaactcaatcataccgttagtcac 684  Q
     ||||| || | || ||| || || || |||||||||||||| || ||||||||    
T  28248996 agcaagttgtagttctgtggggcagtagtgcaactcaatcattccattagtcac 28248943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 527 - 638
Target Start/End: Original strand, 11186979 - 11187090
Alignment:
Q  527 attctaatactcccccttaatttataactgctgaatgttcacaacaccaagttttttcctcaaaaattcaaatatgtcaagcttcaaag-tcttgtaaag 625  Q
    |||||||||||||||||||| | ||||||||||||  |  | || ||| ||||| ||||||||||||||||||| || ||| ||||  | | |||||||     
T  11186979 attctaatactcccccttaa-tcataactgctgaacatcaaaaatacctagtttcttcctcaaaaattcaaatacgtgaagtttcactgcttttgtaaaa 11187077  T
Q  626 ccatctgcaagct 638  Q
    |||||||||||||    
T  11187078 ccatctgcaagct 11187090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 532 - 684
Target Start/End: Complemental strand, 49257 - 49105
Alignment:
Q  532 aatactcccccttaatttataactgctgaatgttcacaacaccaagttttttcctcaaaaattcaaatatgtcaagcttcaaag-tcttgtaaagccatc 630  Q
    ||||||||||||||||  |||||| |||||| || | |||||| | ||| |||||||| ||||||||| ||||||||||||  | | ||||||| |||||    
T  49257 aatactcccccttaatc-ataactactgaatattaagaacacctaatttcttcctcaagaattcaaatttgtcaagcttcactgcttttgtaaaaccatc 49159  T
Q  631 tgcaagctgcaattatgtaggacaatactgcaactcaatcataccgttagtcac 684  Q
     ||||| || | || ||| || || || |||||||||||||| || ||||||||    
T  49158 agcaagttgtagttctgtggggcagtagtgcaactcaatcattccattagtcac 49105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 569 - 672
Target Start/End: Original strand, 50778361 - 50778465
Alignment:
Q  569 aacaccaagttttttcctcaaaaattcaaatatgtcaagcttcaaagtc-ttgtaaagccatctgcaagctgcaattatgtaggacaatactgcaactca 667  Q
    |||||||||||  ||||| |||||||||||| |||||||||| |  | | ||||||||||||| ||||| |||| || ||| || ||||| |||| ||||    
T  50778361 aacaccaagttccttcctaaaaaattcaaatctgtcaagctttactgcctttgtaaagccatcagcaagttgcagttctgtggggcaatagtgcagctca 50778460  T
Q  668 atcat 672  Q
    |||||    
T  50778461 atcat 50778465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University