View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5006-Insertion-4 (Length: 527)
Name: NF5006-Insertion-4
Description: NF5006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5006-Insertion-4 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 504; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 504; E-Value: 0
Query Start/End: Original strand, 8 - 527
Target Start/End: Original strand, 41890332 - 41890851
Alignment:
| Q |
8 |
ctatgtaaattccagcctgaaataaaagacacaaattgataatcaatacattgataaaacaagtcttaaatttctttggtttcttgattcattacccaat |
107 |
Q |
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| T |
41890332 |
ctatgtaaattccagcctgaaataaaagacacaaattgataatcaatacattgagaaaacaagtcttaaatttctttggtttcttgattcattacccaat |
41890431 |
T |
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| Q |
108 |
tgatgaaccagttgatgctgaatttctttggtttcttgattatcatccacattatgctaggaagctgaaacaattaacaagccaataattgactttttag |
207 |
Q |
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| T |
41890432 |
tgatgaaccagttgatgctgaatttctttggtttcttgattatcatccacattatgctaggaagctgaaacaattaacaagccaataattgactttttag |
41890531 |
T |
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| Q |
208 |
tttcagaatcaattcatcttaaattgacaatctgacataagaatagagaggacaagagagccttacaaaatatgaagtgggagcaaaaccaaatccacca |
307 |
Q |
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| T |
41890532 |
tttcagaatcaattcattttaaattgacaatttgacataagaatagagaggacaagagagccttacaaaatatgaagtgggagcaaaaccaaatccacca |
41890631 |
T |
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| Q |
308 |
aagaatccaagaagatcaccaaagaatggaaaagtgactccaaagaataatgtaaaagctgaaacatttcaacaaagacctatcatgaagaaaataattc |
407 |
Q |
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| T |
41890632 |
aagaatccaagaagatcaccaaagaatggaaaagtgactccaaagaataatgtaaaagctgaaacgtttcaacaaagacctatcatgaagaaaataattc |
41890731 |
T |
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| Q |
408 |
ttctatctatactgcagaaaattagtttcgcctcgagttttgacatcttacctacataagcagatcgagctacaagtctaagcgctacaccgggagggaa |
507 |
Q |
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| T |
41890732 |
ttctatctatactgcagaaaattagtttcgcctcgagttttgacatcttacctacataagcagatcgagctacaagtctaagcgctacaccgggagggaa |
41890831 |
T |
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| Q |
508 |
gttcaatcttcgcatcatca |
527 |
Q |
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| T |
41890832 |
gttcaatcttcgcatcatca |
41890851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 96 - 383
Target Start/End: Original strand, 41896022 - 41896319
Alignment:
| Q |
96 |
tcattacccaattgatgaaccagttgatgctgaatttctttggtttcttgattatcatccacattatgctaggaagctgaaacaattaacaagccaataa |
195 |
Q |
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| T |
41896022 |
tcattacccaattgatgaaccaattgatactgaatctccttggcttcttgattatcaaccacattatactaggaagctgaaataattcacaagaaaataa |
41896121 |
T |
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| Q |
196 |
ttgactttttagtttcagaatcaattcatcttaaa--ttgacaatctgacataagaatagaga--------ggacaagagagccttacaaaatatgaagt |
285 |
Q |
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| T |
41896122 |
ttcatcttttgattttataattaattcatttaaaaatttgacaatttgacataagcatagagaaattgagaggacaagagtgccttacaaaatatgacgt |
41896221 |
T |
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| Q |
286 |
gggagcaaaaccaaatccaccaaagaatccaagaagatcaccaaagaatggaaaagtgactccaaagaataatgtaaaagctgaaacatttcaacaaa |
383 |
Q |
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| T |
41896222 |
gggagcaaaaccaaatccaccaaagaacccaagaagatctccaaagaaaggaaaactcaccccaaataataatgtaaaagctgaaacatatcaacaaa |
41896319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 428 - 515
Target Start/End: Original strand, 41896418 - 41896505
Alignment:
| Q |
428 |
attagtttcgcctcgagttttgacatcttacctacataagcagatcgagctacaagtctaagcgctacaccgggagggaagttcaatc |
515 |
Q |
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| T |
41896418 |
attagttttgactcaagttttgccatcttacctacataggcggatcgagctacaagtctaagcgctacactaggagggaagttcaatc |
41896505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 99 - 182
Target Start/End: Complemental strand, 22552153 - 22552070
Alignment:
| Q |
99 |
ttacccaattgatgaaccagttgatgctgaatttctttggtttcttgattatcatccacattatgctaggaagctgaaacaatt |
182 |
Q |
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| T |
22552153 |
ttacccaatttatgaaccagttgatgctaaatctctttggtttcttgattattagccacattatactaggaagctgaaacaatt |
22552070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 269 - 333
Target Start/End: Complemental strand, 22551974 - 22551910
Alignment:
| Q |
269 |
cttacaaaatatgaagtgggagcaaaaccaaatccaccaaagaatccaagaagatcaccaaagaa |
333 |
Q |
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| T |
22551974 |
cttacaaaatatgaagtgggagcaaaaccaaatccaccaaagaagccaagaagatcgccaaagaa |
22551910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 269 - 336
Target Start/End: Complemental strand, 43855252 - 43855185
Alignment:
| Q |
269 |
cttacaaaatatgaagtgggagcaaaaccaaatccaccaaagaatccaagaagatcaccaaagaatgg |
336 |
Q |
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| T |
43855252 |
cttacaaaatatgttgtgggagcaaatgccaatcctccaaaaaatccaaggagagcaccaaagaatgg |
43855185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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