View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5006_high_13 (Length: 281)
Name: NF5006_high_13
Description: NF5006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5006_high_13 |
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Alignment Details
Target: chr7 (Bit Score: 239; Significance: 1e-132; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 10 - 276
Target Start/End: Original strand, 22783279 - 22783545
Alignment:
| Q |
10 |
taatattggattaattggtacccaatttcctttgtttcgaatttctaacccagacacatcatcatcttgcatgagcaaggtaatggtgcctgtgtcagaa |
109 |
Q |
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| T |
22783279 |
taatattggattaattggtacccaatttcctttgtttcgaatttctaacccagacacatcatcatcttgcatgagcaaggtaatggtgcctgtgtcagaa |
22783378 |
T |
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| Q |
110 |
tgcgaactcatacctagtacttgctcaggtgtgttgcaaggagggtaatagttcacacgtaatgcttgaatgaattctttatgcaatccaacaagagcat |
209 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22783379 |
tgcgaactcatacctaatacttgctcaggtgtgttgcaaggagggtaatagttcacacgtaatgcttgaatgaattctttatgcaatccaacaagagcat |
22783478 |
T |
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| Q |
210 |
gcttctctaaccccatgataatagacagaaaacttagaatttcctcgccaactcgtttcatctcact |
276 |
Q |
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| T |
22783479 |
gcttctctaaccccataataatagacaaagaacttaaaagttcctcgccaactcgtttcatttcact |
22783545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 5 - 265
Target Start/End: Original strand, 22778827 - 22779087
Alignment:
| Q |
5 |
gcatctaatattggattaattggtacccaatttcctttgtttcgaatttctaacccagacacatcatcatcttgcatgagcaaggtaatggtgcctgtgt |
104 |
Q |
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| T |
22778827 |
gcatctgatattggtttaaccggtacccaatttcctttgtttctgatttctaatccaagcacatcatcatcttgaataagtaaggtaatggtggttgtgt |
22778926 |
T |
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| Q |
105 |
cagaatgcgaactcatacctagtacttgctcaggtgtgttgcaaggagggtaatagttcacacgtaatgcttgaatgaattctttatgcaatccaacaag |
204 |
Q |
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| T |
22778927 |
cagagtgtggactcaaacccaatacttgctcagggttgttgcaaggagggtaatagttcacgcgtaaaccttgaattaattctttatgcagttcagcgag |
22779026 |
T |
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| Q |
205 |
agcatgcttctctaaccccatgataatagacagaaaacttagaatttcctcgccaactcgt |
265 |
Q |
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|||||| ||||| ||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
22779027 |
agcatgtttctccaaccccatgataatagacagaaaacttagaagttcctcgccaactcgt |
22779087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 5 - 269
Target Start/End: Original strand, 22766155 - 22766419
Alignment:
| Q |
5 |
gcatctaatattggattaattggtacccaatttcctttgtttcgaatttctaacccagacacatcatcatcttgcatgagcaaggtaatggtgcctgtgt |
104 |
Q |
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|||||| |||||||| ||| ||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| || | ||||||||||||||||| |
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| T |
22766155 |
gcatctgatattggaataactggaacccaatttcctttgtttcgaatttctaacccaggcacatcatcatcttgcataagaatggtaatggtgcctgtgt |
22766254 |
T |
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| Q |
105 |
cagaatgcgaactcatacctagtacttgctcaggtgtgttgcaaggagggtaatagttcacacgtaatgcttgaatgaattctttatgcaatccaacaag |
204 |
Q |
| |
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|||| || || |||| ||| | |||||| |||||||||||||| | |||||||||||| |||||| | ||||| ||||||||||||| |||| ||| |
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| T |
22766255 |
cagagtgtgagctcaaacccaatacttgatcaggtgtgttgcatgtagggtaatagtttacacgtgaacattgaagtaattctttatgcatcccaaaaag |
22766354 |
T |
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| Q |
205 |
agcatgcttctctaaccccatgataatagacagaaaacttagaatttcctcgccaactcgtttca |
269 |
Q |
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|||||| ||||| |||||||| |||| ||||| | ||||||||| |||||| ||||||||||||| |
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| T |
22766355 |
agcatgtttctccaaccccataataagagacaaagaacttagaagttcctcaccaactcgtttca |
22766419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 5 - 263
Target Start/End: Original strand, 22775672 - 22775930
Alignment:
| Q |
5 |
gcatctaatattggattaattggtacccaatttcctttgtttcgaatttctaacccagacacatcatcatcttgcatgagcaaggtaatggtgcctgtgt |
104 |
Q |
| |
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|||||| |||||||| ||| ||||||||||||||||| | |||||||||||| |||| |||||||||||||||||| || || |||||||||| || || |
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| T |
22775672 |
gcatctgatattggagtaacgggtacccaatttcctttatgtcgaatttctaatccaggcacatcatcatcttgcataagtaaagtaatggtgcttgagt |
22775771 |
T |
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| Q |
105 |
cagaatgcgaactcatacctagtacttgctcaggtgtgttgcaaggagggtaatagttcacacgtaatgcttgaatgaattctttatgcaatccaacaag |
204 |
Q |
| |
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| || || | ||||| ||| | |||||||||||||||| ||||||||||||||||||||||||||| | |||| | ||||||||||| |||| |||| |
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| T |
22775772 |
cggagtgtggactcaaacccaacacttgctcaggtgtgtcgcaaggagggtaatagttcacacgtaaaccctgaagtacttctttatgcagtccagcaag |
22775871 |
T |
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| Q |
205 |
agcatgcttctctaaccccatgataatagacagaaaacttagaatttcctcgccaactc |
263 |
Q |
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| T |
22775872 |
aacatgtttttccaaccccataataacagacaaagaacttagaagttcgtcaccaactc |
22775930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 26 - 279
Target Start/End: Complemental strand, 16084194 - 16083941
Alignment:
| Q |
26 |
ggtacccaatttcctttgtttcgaatttctaacccagacacatcatcatcttgcatgagcaaggtaatggtgcctgtgtcagaatgcgaactcataccta |
125 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| |||||||||||||||| || |||||||||||| || |||| | || | |||| ||||| |
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| T |
16084194 |
ggtacccaatttcctttgtgtcgaatttctaacccaggaacatcatcatcttgcaaaagtaaggtaatggtggttgagtcacagtgtggtctcaaaccta |
16084095 |
T |
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| Q |
126 |
gtacttgctcaggtgtgttgcaaggagggtaatagttcacacgtaatgcttgaatgaattctttatgcaatccaacaagagcatgcttctctaaccccat |
225 |
Q |
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||||| |||||| || |||||||||||||||||||||||||||| |||||| | ||||||||| | | ||||||||||||||||||| || ||||| |
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| T |
16084094 |
atactttctcaggcatgctgcaaggagggtaatagttcacacgtaaaccttgaagtacttctttatgtagttcaacaagagcatgcttctccaaacccat |
16083995 |
T |
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| Q |
226 |
gataatagacagaaaacttagaatttcctcgccaactcgtttcatctcactcga |
279 |
Q |
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|| | ||||| | ||||||||| ||| | ||||||||||||| |||||||| |
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| T |
16083994 |
aattacagacaaagaacttagaagttcataaccaactcgtttcacttcactcga |
16083941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 13 - 168
Target Start/End: Original strand, 22770548 - 22770703
Alignment:
| Q |
13 |
tattggattaattggtacccaatttcctttgtttcgaatttctaacccagacacatcatcatcttgcatgagcaaggtaatggtgcctgtgtcagaatgc |
112 |
Q |
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||||||| |||||||||||||||||| ||||| |||||||||| ||| || |||||||| |||||||| | | | |||||| | || ||||| ||| |
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| T |
22770548 |
tattggagtaattggtacccaatttcttttgtatcgaatttctgtccctgatacatcatcgtcttgcataactattgcaatggtccttggatcagagtgc |
22770647 |
T |
|
| Q |
113 |
gaactcatacctagtacttgctcaggtgtgttgcaaggagggtaatagttcacacg |
168 |
Q |
| |
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| ||||| ||||||||||| ||| |||||||| ||||||||||||||||||||||| |
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| T |
22770648 |
ggactcacacctagtactttctcgggtgtgttacaaggagggtaatagttcacacg |
22770703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 13 - 205
Target Start/End: Complemental strand, 23278140 - 23277948
Alignment:
| Q |
13 |
tattggattaattggtacccaatttcctttgtttcgaatttctaacccagacacatcatcatcttgcatgagcaaggtaatggtgcctgtgtcagaatgc |
112 |
Q |
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|||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||| |||||||| | | |||| |||| || ||||| || |
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| T |
23278140 |
tattggattaattggtacccaatttcctttgtatcgaacttctaacccagttacatcatcgtcttgcataactattgtaactgtgcttgcatcagagtgt |
23278041 |
T |
|
| Q |
113 |
gaactcatacctagtacttgctcaggtgtgttgcaaggagggtaatagttcacacgtaatgcttgaatgaattctttatgcaatccaacaaga |
205 |
Q |
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| | ||| || | ||||||||| |||||||| |||||||| ||||||||||||||||| |||||| | ||||||||| | ||||| |||| |
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| T |
23278040 |
ggagtcaacccaattacttgctctggtgtgttacaaggaggataatagttcacacgtaaaccttgaagtacttctttatgtagtccaagaaga |
23277948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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