View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5006_high_20 (Length: 245)
Name: NF5006_high_20
Description: NF5006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5006_high_20 |
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Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 35252905 - 35253133
Alignment:
| Q |
1 |
gagatatagatgggactcaatgatcataatagaagcgcagggaagtgtttacctgaaaaccagcaacaactaacacattagggtatcgaggatggaatat |
100 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |
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| T |
35252905 |
gagatatagatgggacttaatgatcataatagaagcgcagggaagtgtttacctgaaaaccagcaacaactaagacgttagggtatcgaggatggaatat |
35253004 |
T |
|
| Q |
101 |
gacagactgaaacatcttcccgtttgattgatactcgaatatgcatcgtctgtccgaccagacacgtacttcatcttcactgacagaggcaatcatattt |
200 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35253005 |
gacagactgaaacctcttcccgtttgattgatactcgaatatgcatcgtctgtccgaccagacacgtacttcatcttcactgacagaggcaatcatattc |
35253104 |
T |
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| Q |
201 |
ccagtgacatccaaacatatggaattgat |
229 |
Q |
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|||||||| |||||||||||||||||||| |
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| T |
35253105 |
ccagtgacgtccaaacatatggaattgat |
35253133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 35240652 - 35240879
Alignment:
| Q |
1 |
gagatatagatgggactcaatgatcata--atagaagcgcagggaagtgtttacctgaaaaccagcaacaactaacacattagggtatcgaggatggaat |
98 |
Q |
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|||||||||||||||| ||| |||||| |||||||| ||||||| ||||||||||||||||||||||||||| || | ||| ||||||||||||||| |
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| T |
35240652 |
gagatatagatgggacacaacaatcatataatagaagcagagggaagagtttacctgaaaaccagcaacaactaagacgtcaggatatcgaggatggaat |
35240751 |
T |
|
| Q |
99 |
atgacagactgaaacatcttcccgtttgattgatactcgaatatgcatcgtctgtccgaccagacacgtacttcatcttcactgacagaggcaatcatat |
198 |
Q |
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|||| |||||||||| ||||||||| |||||||||||||||||||||| ||| |||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
35240752 |
atgatagactgaaacctcttcccgtctgattgatactcgaatatgcattgtccgtccgaccagacacgtacatcatcttcactgacagaggcaatcatat |
35240851 |
T |
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| Q |
199 |
ttccagtgacatccaaacatatggaatt |
226 |
Q |
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| T |
35240852 |
tcccagtgacatcccaacatatggaatt |
35240879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 23 - 220
Target Start/End: Original strand, 35270789 - 35270992
Alignment:
| Q |
23 |
atcataatagaagcgcagggaagtgtttacctgaaaaccagcaacaactaacacattagggtatcgaggatggaatatgacagactgaaacatcttcccg |
122 |
Q |
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|||||||| |||||| |||||||||||||||||||||| | ||| |||||| || |||||||||||||||||||||||||| ||||||||| ||||||| |
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| T |
35270789 |
atcataatggaagcggagggaagtgtttacctgaaaacaaccaataactaagacgttagggtatcgaggatggaatatgacggactgaaacctcttccca |
35270888 |
T |
|
| Q |
123 |
tttgattgatactcgaatatgca-tcgtctgt-----ccgaccagacacgtacttcatcttcactgacagaggcaatcatatttccagtgacatccaaac |
216 |
Q |
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|||||| ||||||| ||||| | || | | | ||| | |||||||| ||||||||||||||||||||||||||||| |||||| ||||| ||| |
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| T |
35270889 |
tttgatggatactcatatatggactctttcataaaaactgacaaaacacgtacatcatcttcactgacagaggcaatcatattcccagtggcatcccaac |
35270988 |
T |
|
| Q |
217 |
atat |
220 |
Q |
| |
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|||| |
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|
| T |
35270989 |
atat |
35270992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 35277420 - 35277554
Alignment:
| Q |
1 |
gagatatagatgggactcaatgatcataatagaagcgcagggaagtgtttacctgaaaaccagcaacaactaacacattagggtatcgaggatggaatat |
100 |
Q |
| |
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|||||||||| | ||| | ||||||||||| ||||| ||||||| ||||||||||||||| |||||||||| |||||| ||||| ||||||||||||| |
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| T |
35277420 |
gagatatagaagagacactatgatcataatggaagcagagggaagagtttacctgaaaaccgccaacaactaagacattacggtattgaggatggaatat |
35277519 |
T |
|
| Q |
101 |
gacagactgaaacatcttcccgtttgattgatact |
135 |
Q |
| |
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||| |||||||| | |||||||||||| |||||| |
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| T |
35277520 |
gaccgactgaaaattattcccgtttgatggatact |
35277554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 35246281 - 35246513
Alignment:
| Q |
1 |
gagatatagatgggactcaatgatcataatagaagcgcagggaagtgtttacctgaaaaccagcaacaactaacacattagggtatcgaggatggaatat |
100 |
Q |
| |
|
||||||||||||| || || ||||||||||| ||| ||| |||| ||||||||||||||| ||| |||||| || ||||||||||||||||||||| |
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| T |
35246281 |
gagatatagatggcacacac-gatcataatagtagcagaggaaagtatttacctgaaaaccaccaataactaagacgccagggtatcgaggatggaatat |
35246379 |
T |
|
| Q |
101 |
gacagactgaaacatcttcccgtttgattgatactcgaatatgcatcgtct---------gtccgaccagacacgtacttcatcttcactgacagaggca |
191 |
Q |
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||||||||||||| | ||||| |||||| |||||| | |||||| || | ||||||| |||||||| ||||||||| ||||||||||| |
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| T |
35246380 |
gacagactgaaacctgttcccatttgatggatacttatacatgcattgtttcaccataaaaaccgaccaaacacgtacatcatcttcagtgacagaggca |
35246479 |
T |
|
| Q |
192 |
atcatatttccagtgacatccaaacatatggaat |
225 |
Q |
| |
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||||| || |||||||||||| |||| ||||||| |
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| T |
35246480 |
atcattttaccagtgacatcccaacacatggaat |
35246513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 20 - 224
Target Start/End: Original strand, 35286490 - 35286703
Alignment:
| Q |
20 |
atgatcataatagaagcgcagggaagtgtttacctgaaaaccagcaacaactaacacattagggtatcgaggatggaatatgacagactgaaacatcttc |
119 |
Q |
| |
|
|||| |||||| ||||| |||||||| |||||||||||||||| |||||||||| || ||| |||||||||||||||||||||| ||| |||||||||| |
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| T |
35286490 |
atgaacataatggaagcacagggaagagtttacctgaaaaccaccaacaactaagacgttacggtatcgaggatggaatatgacggacataaacatcttc |
35286589 |
T |
|
| Q |
120 |
ccgtttgattgatactcgaatatgcatcgtctgtc---------cgaccagacacgtacttcatcttcactgacagaggcaatcatatttccagtgacat |
210 |
Q |
| |
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|| || ||| ||||||| ||| ||| ||| ||| || |||||||||||| ||||| ||||||||||||| ||||| | |||||||||| |
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| T |
35286590 |
cctttcgatggatactcatataagcactgtccgtccatagaaagcgtccagacacgtacaccatctgcactgacagaggcgatcatttgcccagtgacat |
35286689 |
T |
|
| Q |
211 |
ccaaacatatggaa |
224 |
Q |
| |
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|| |||||| |||| |
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| T |
35286690 |
cccaacataaggaa |
35286703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 35282967 - 35283089
Alignment:
| Q |
1 |
gagatatagatgggactcaatgatcataatagaagcgcagggaagtgtttacctgaaaaccagcaacaactaacacattagggtatcgaggatggaatat |
100 |
Q |
| |
|
|||||||||| | ||| | ||||||||||| ||||| ||| ||| |||||||||||| ||| |||||||| || ||| ||| ||||||||||||||| |
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| T |
35282967 |
gagatatagaagagacaccatgatcataatggaagctgaggaaagagtttacctgaaatccactcacaactaagacgttacggtgtcgaggatggaatat |
35283066 |
T |
|
| Q |
101 |
gacagactgaaacatcttcccgt |
123 |
Q |
| |
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||||||||||||| ||||||||| |
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| T |
35283067 |
gacagactgaaacctcttcccgt |
35283089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 49 - 136
Target Start/End: Original strand, 35237675 - 35237762
Alignment:
| Q |
49 |
ttacctgaaaaccagcaacaactaacacattagggtatcgaggatggaatatgacagactgaaacatcttcccgtttgattgatactc |
136 |
Q |
| |
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|||||||||| ||| ||| ||||| |||||||||||| ||||||||| |||| ||||||||| ||||||| |||||||||||||| |
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|
| T |
35237675 |
ttacctgaaatccaccaataactagtgcattagggtatctaggatggaagatgatggactgaaacctcttcccatttgattgatactc |
35237762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 151
Target Start/End: Original strand, 35275093 - 35275139
Alignment:
| Q |
105 |
gactgaaacatcttcccgtttgattgatactcgaatatgcatcgtct |
151 |
Q |
| |
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||||||||| ||||||| |||||| |||||||| ||||||||||||| |
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|
| T |
35275093 |
gactgaaacctcttcccatttgatggatactcgtatatgcatcgtct |
35275139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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