View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5006_high_3 (Length: 469)
Name: NF5006_high_3
Description: NF5006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5006_high_3 |
 | |
|
| [»] scaffold0631 (1 HSPs) |
| |
|
| [»] chr4 (1 HSPs) |
| |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 18 - 352
Target Start/End: Complemental strand, 3386020 - 3385682
Alignment:
| Q |
18 |
attctaactttgagcggtactatatggagtagcccctctattggtgtttggtaatttttgaaattgtatggtttcaatcgactttcaattttactttaga |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| | |
|
|
| T |
3386020 |
attctaactttgagcggtactatatggagtagcccctctattggtgtttggtaatttttgaaattgtatggtttcaatggacttttaattttactttaaa |
3385921 |
T |
|
| Q |
118 |
aacaattatatattttcttggttaaattatcttttagaatatggcccagattcagaattggttcaccatgagagtttaatttgggtatcgaaggatattg |
217 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||| ||||||| |||||||| |||||||||||||| |
|
|
| T |
3385920 |
aacaattatatattttcttggtcaaattatcttttagaatatggccaagatttagaattggttcaccacgagagttaaatttgggcatcgaaggatattg |
3385821 |
T |
|
| Q |
218 |
gttttgaagttgtaaatttgggaccaaaagaatttgcttgaggggctgaagatccaaaatctcaatggagtcattcaatgtacttaataaaacatccctt |
317 |
Q |
| |
|
|||||||||||| |||||| ||||||| |||||||| |||| || ||||||||||||||||||||||||||| |||||| |||||||||||| ||||||| |
|
|
| T |
3385820 |
gttttgaagttgcaaatttaggaccaatagaatttgtttgaaggactgaagatccaaaatctcaatggagtcgttcaatttacttaataaaatatccctt |
3385721 |
T |
|
| Q |
318 |
acttatat----ttataaccataataacacgacatcatt |
352 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||||||| |
|
|
| T |
3385720 |
acttatatttatttataaccataataacatgacatcatt |
3385682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 123 - 164
Target Start/End: Complemental strand, 3404867 - 3404826
Alignment:
| Q |
123 |
ttatatattttcttggttaaattatcttttagaatatggccc |
164 |
Q |
| |
|
|||||||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
3404867 |
ttatatatttatttggtcaaattatcttttagaatatggccc |
3404826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 144 - 336
Target Start/End: Complemental strand, 41805040 - 41804843
Alignment:
| Q |
144 |
ttatcttttagaatatggcccagattcagaattggttcaccatga-----gagtttaatttgggtatcgaaggatattggttttgaagttgtaaatttgg |
238 |
Q |
| |
|
||||||||||||||||| || |||||||||||| |||||||| | ||||| ||| | || ||| |||||| |||||||| |||||| |||||| | |
|
|
| T |
41805040 |
ttatcttttagaatatgacctagattcagaattagttcaccacaacacaagagttaaatattggcatccaaggatgttggttttcaagttgcaaatttag |
41804941 |
T |
|
| Q |
239 |
gaccaaaagaatttgcttgaggggctgaagatccaaaatctcaatggagtcattcaatgtacttaataaaacatcccttacttatatttataaccata |
336 |
Q |
| |
|
||||| |||||||||||||||| | |||| ||||||| | |||||| |||||||||||||||||||||||||| ||||| | || ||||||||||| |
|
|
| T |
41804940 |
gaccagtagaatttgcttgagggaccaaagaaccaaaatatgaatggactcattcaatgtacttaataaaacatcacttacctttaattataaccata |
41804843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 438 - 469
Target Start/End: Original strand, 33075083 - 33075114
Alignment:
| Q |
438 |
agcaaaactttatattttagattcattcaatt |
469 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
33075083 |
agcaaaactttatattttagattcattcaatt |
33075114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0631 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0631
Description:
Target: scaffold0631; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 438 - 469
Target Start/End: Original strand, 4365 - 4396
Alignment:
| Q |
438 |
agcaaaactttatattttagattcattcaatt |
469 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
4365 |
agcaaaactttatattttagattcattcaatt |
4396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 438 - 469
Target Start/End: Original strand, 10308253 - 10308284
Alignment:
| Q |
438 |
agcaaaactttatattttagattcattcaatt |
469 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
10308253 |
agcaaaactttatattttagattcattcaatt |
10308284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 438 - 469
Target Start/End: Complemental strand, 48083626 - 48083595
Alignment:
| Q |
438 |
agcaaaactttatattttagattcattcaatt |
469 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
48083626 |
agcaaaactttatattttagattcattcaatt |
48083595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University