View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5006_high_7 (Length: 362)
Name: NF5006_high_7
Description: NF5006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5006_high_7 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 1 - 362
Target Start/End: Original strand, 25533568 - 25533929
Alignment:
| Q |
1 |
aaataaatgtttcatatctatcacaaatcacaaataaaaaacaacaagaaccatatccaatttcatctccaatttcaacttcaacaatttcaatggagaa |
100 |
Q |
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| T |
25533568 |
aaataaatgtttcatatctatcacaaatcacaaataaaaaacaacaagaaccatatccaatttcatctccaatttcaacttcaacaatttcaatggagaa |
25533667 |
T |
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| Q |
101 |
gtgattaaagacttagtgtcgtttgcataattgacattcctttcactaaacattgctgctatattcaatttagccttatgggtcatagnnnnnnnactta |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
25533668 |
gtgattaaagacttagtgtcgtttgcataattgacattcctttcactaaacattgctgctatattcaatttagccttatgggtcatattttttttactta |
25533767 |
T |
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| Q |
201 |
ttctcttcattaactatcaaatccaaaatctcgatatagctacatctcacgacgacgaagctgcacgtggtgctacaataactcatgtttgttattgttt |
300 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
25533768 |
ttctcttcattaactatcagatccaaaatctcgatatagctacatctcacgacgaccaagctgcacctggtgctacaataactcatgtttgttattgttt |
25533867 |
T |
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| Q |
301 |
ccagaaaaacattgcagcttattgttaatggacaggaattgaagagataacgggtcgaggaa |
362 |
Q |
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||||||| | ||||||||||||||||||||| |||| ||||||||||||| ||||||||||| |
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| T |
25533868 |
ccagaaacaaattgcagcttattgttaatggccaggcattgaagagataaagggtcgaggaa |
25533929 |
T |
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