View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5006_low_11 (Length: 313)
Name: NF5006_low_11
Description: NF5006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5006_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 298
Target Start/End: Complemental strand, 21829872 - 21829576
Alignment:
| Q |
1 |
ttatgtaaacttttagttaaaagaagagtaatat--ccaatccaaatccaaataagttaaaaggaaaactactaacatcaattcttattttatgaggact |
98 |
Q |
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||||||||||||| |||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21829872 |
ttatgtaaactttaagtttaaagaagagtaatatatccaatccaaatccaaataagttaaaaggaaaactactaacatcaattcttattttatgaggact |
21829773 |
T |
|
| Q |
99 |
actaacataatttttattttattttagaaattacatactcctatttgagacattgtacgttggtcaataattatgggcacatc-tttaattaagatttaa |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |||||||||||||||| |
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| T |
21829772 |
actaacataatttttattttattttagaaattacatactcctatttgagacattgtacgttggtcactaattatggaaacatcttttaattaagatttaa |
21829673 |
T |
|
| Q |
198 |
actaatttagatcgtcatgttgttgcggaagtctaacatattctactagatccaactcttgtcttaaccgattgtgcaatcaaatgaaataagtcaaatc |
297 |
Q |
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|| |||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |
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| T |
21829672 |
ac---tttagatcgttatgttgttgcggaagtctaacatattctactagatccaactc-tgtcttaaccgattgtgcaatcaaatgaaatgagtcaaatc |
21829577 |
T |
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