View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5006_low_12 (Length: 308)
Name: NF5006_low_12
Description: NF5006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5006_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 273; Significance: 1e-152; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 35252882 - 35252606
Alignment:
| Q |
1 |
ttatacagttagactcagtcatagttgaacctattaaaactataaaagtatacgaggtggttgcataaatagtaagtaaataatctgtggacaacttatt |
100 |
Q |
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| T |
35252882 |
ttatacagttagactcagtcatagttgaacctattaaaactataaaagtatacgaggtggttgcataaatagtaagtaaataatctgtggacaacttatt |
35252783 |
T |
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| Q |
101 |
gcagtgcttggaattgttgattcttgagactgagaaaagacgtaataaaggaggtgcctctgatgtattaattactggactagcagctactacggcgcga |
200 |
Q |
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| T |
35252782 |
gcagtgcttggaattgttgattcttgagactgagaaaagacgtaataaaggaggtgcctctgatgtattaattactggactagcagctactacggcgcga |
35252683 |
T |
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| Q |
201 |
agtgaattcaatattgcatcagctagcagtgattctgtggtgaagatatggaaatgaagttctagttaatgtctctg |
277 |
Q |
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| T |
35252682 |
agtgaattcaatattgcatcagctagcagtgattctgtggtgaagatatggaaatgaagttctagtaaatgtctctg |
35252606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 4 - 277
Target Start/End: Complemental strand, 35240627 - 35240354
Alignment:
| Q |
4 |
tacagttagactcagtcatagttgaacctattaaaactataaaagtatacgaggtggttgcataaatagtaagtaaataatctgtggacaacttattgca |
103 |
Q |
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| T |
35240627 |
tacagttagactcagtcatagttgaacctattaaaactataaaagtatacgaggtggttgcataaatagtaagtaaataatctgtggacaacttattgca |
35240528 |
T |
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| Q |
104 |
gtgcttggaattgttgattcttgagactgagaaaagacgtaataaaggaggtgcctctgatgtattaattactggactagcagctactacggcgcgaagt |
203 |
Q |
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| T |
35240527 |
gtgcttggaattgttgactgttgagaccagggaaatacgtactaaaggagatgcctctgatgtattaattactggactagcagctactacagcgcgaagt |
35240428 |
T |
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| Q |
204 |
gaattcaatattgcatcagctagcagtgattctgtggtgaagatatggaaatgaagttctagttaatgtctctg |
277 |
Q |
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|||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35240427 |
gaattcgatattgcatcagctagcagtaattctgtggtgaagatatggaaatgaagttctagttaatgtctctg |
35240354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 68 - 277
Target Start/End: Complemental strand, 35246027 - 35245818
Alignment:
| Q |
68 |
aatagtaagtaaataatctgtggacaacttattgcagtgcttggaattgttgattcttgagactgagaaaagacgtaataaaggaggtgcctctgatgta |
167 |
Q |
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|||| |||||||||||||| |||||||||||||||||||||||||| ||||||| |||||| | | ||||| |||||||||| ||||||||||| || |
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| T |
35246027 |
aatattaagtaaataatcttcggacaacttattgcagtgcttggaatggttgattattgagaacgggcaaagatttaataaaggaagtgcctctgatata |
35245928 |
T |
|
| Q |
168 |
ttaattactggactagcagctactacggcgcgaagtgaattcaatattgcatcagctagcagtgattctgtggtgaagatatggaaatgaagttctagtt |
267 |
Q |
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| T |
35245927 |
tcaattactggactagcagcttcaacggcgcaaagtgaattccatattgcatccgctagcactgattctatggtgaagctatggaaatgaaattctagtt |
35245828 |
T |
|
| Q |
268 |
aatgtctctg |
277 |
Q |
| |
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|||||||||| |
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| T |
35245827 |
aatgtctctg |
35245818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 61 - 129
Target Start/End: Complemental strand, 35270105 - 35270037
Alignment:
| Q |
61 |
ttgcataaatagtaagtaaataatctgtggacaacttattgcagtgcttggaattgttgattcttgaga |
129 |
Q |
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||||||||| || ||||||||||| |||| |||| ||||| |||||| ||||||||||||||||||||| |
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| T |
35270105 |
ttgcataaagagaaagtaaataatatgtgtacaatttattacagtgcctggaattgttgattcttgaga |
35270037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 61 - 126
Target Start/End: Complemental strand, 35277159 - 35277094
Alignment:
| Q |
61 |
ttgcataaatagtaagtaaataatctgtggacaacttattgcagtgcttggaattgttgattcttg |
126 |
Q |
| |
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||||||| || | |||||||||||||||| |||| ||||||||| || |||||||||||| ||||| |
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| T |
35277159 |
ttgcatagatggaaagtaaataatctgtgtacaatttattgcagggcatggaattgttgactcttg |
35277094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 235 - 276
Target Start/End: Complemental strand, 35285893 - 35285852
Alignment:
| Q |
235 |
ctgtggtgaagatatggaaatgaagttctagttaatgtctct |
276 |
Q |
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| T |
35285893 |
ctgtggtgaacatatggaaatgaagttctagttgatgtctct |
35285852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 261
Target Start/End: Complemental strand, 35269958 - 35269914
Alignment:
| Q |
217 |
catcagctagcagtgattctgtggtgaagatatggaaatgaagtt |
261 |
Q |
| |
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||||||||||| ||||||||||||||||||||||| |||||||| |
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| T |
35269958 |
catcagctagcgatgattctgtggtgaagatatggagatgaagtt |
35269914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 86 - 129
Target Start/End: Complemental strand, 35274873 - 35274830
Alignment:
| Q |
86 |
tgtggacaacttattgcagtgcttggaattgttgattcttgaga |
129 |
Q |
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|||| |||| |||||||||||||||||| ||||||||||||||| |
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| T |
35274873 |
tgtgtacaatttattgcagtgcttggaaatgttgattcttgaga |
35274830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 126
Target Start/End: Complemental strand, 35282746 - 35282681
Alignment:
| Q |
61 |
ttgcataaatagtaagtaaataatctgtggacaacttattgcagtgcttggaattgttgattcttg |
126 |
Q |
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|||||||||| | ||| || ||||||||| |||| |||||||||||| ||||||||| || ||||| |
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| T |
35282746 |
ttgcataaatggaaagcaactaatctgtgtacaatttattgcagtgcatggaattgtggactcttg |
35282681 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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