View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5006_low_16 (Length: 268)
Name: NF5006_low_16
Description: NF5006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5006_low_16 |
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| [»] scaffold1064 (1 HSPs) |
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Alignment Details
Target: scaffold1064 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: scaffold1064
Description:
Target: scaffold1064; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 23 - 248
Target Start/End: Complemental strand, 1781 - 1556
Alignment:
| Q |
23 |
gacatggggtttatgaacaagttatttttcagaatgtaaattagtgacatgaatctatcaacttcaatcagcttatatgggtgacattcccaaataactt |
122 |
Q |
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| T |
1781 |
gacatggggtttgtgaacaagttatttttcagaatgtaaattagtgacatgaatctatcaacttcaatcagcttatatgggtgacattcccaaataactt |
1682 |
T |
|
| Q |
123 |
gcttaaatagaaaagaaaattaatgtattacaacaagatcatgttcaaaggccagcatagtaatataaatcaatatataaactaagaaaacatggagaat |
222 |
Q |
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| T |
1681 |
gcttaaatagaaaagaaaattaatgtattacaacaagatcatgttcaaaggccagcatagtaatataaatcaatatataaactaagaaaacatggagaat |
1582 |
T |
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| Q |
223 |
tatgcatttcattttcgaaatacatt |
248 |
Q |
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|||||||||||||||||||||||||| |
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| T |
1581 |
tatgcatttcattttcgaaatacatt |
1556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 23 - 248
Target Start/End: Complemental strand, 9237780 - 9237555
Alignment:
| Q |
23 |
gacatggggtttatgaacaagttatttttcagaatgtaaattagtgacatgaatctatcaacttcaatcagcttatatgggtgacattcccaaataactt |
122 |
Q |
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|||||||||||| |||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9237780 |
gacatggggtttgtgaagaagttatttttcagaatgtaaattaatgacatgaatctatcaacttcaatcagcttatatgggtgacattcccaaataactt |
9237681 |
T |
|
| Q |
123 |
gcttaaatagaaaagaaaattaatgtattacaacaagatcatgttcaaaggccagcatagtaatataaatcaatatataaactaagaaaacatggagaat |
222 |
Q |
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| T |
9237680 |
gcttaaatagaaaagaaaattaatgtatttcaacaagatcatgttcaaaggccagcatagtaatataaatcaatatataaactaagaaaacatggagaat |
9237581 |
T |
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| Q |
223 |
tatgcatttcattttcgaaatacatt |
248 |
Q |
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| T |
9237580 |
tatgcatttcattttcgaaatacatt |
9237555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 53 - 248
Target Start/End: Complemental strand, 9259075 - 9258880
Alignment:
| Q |
53 |
agaatgtaaattagtgacatgaatctatcaacttcaatcagcttatatgggtgacattcccaaataacttgcttaaatagaaaagaaaattaatgtatta |
152 |
Q |
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||||||||||||| ||||||| ||||||||||| ||||||||||||||||| |||| ||| ||| ||| ||||||||| ||||||||||||||||||||| |
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| T |
9259075 |
agaatgtaaattaatgacatgcatctatcaactgcaatcagcttatatgggggacactcctaaagaacatgcttaaattgaaaagaaaattaatgtatta |
9258976 |
T |
|
| Q |
153 |
caacaagatcatgttcaaaggccagcatagtaatataaatcaatatataaactaagaaaacatggagaattatgcatttcattttcgaaatacatt |
248 |
Q |
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| T |
9258975 |
caacaagatcattatcaaaggccaatatagtaatataaatcaatatataaattaagaaaacttggaaaattatgcatttcaattttaaaatacatt |
9258880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 23 - 233
Target Start/End: Complemental strand, 9173464 - 9173252
Alignment:
| Q |
23 |
gacatggggtttatgaacaagttatttttcagaatgtaaattagtgacatgaatct-atcaacttcaatcagctt-atatgggtgacattcccaaataac |
120 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| | ||||| |||||||| | | ||| |
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| T |
9173464 |
gacatggggtttatgaacaagttatttttcagaatgtaaattaatgacatgaatcttatcaacttcaatcagctttaaatgggggacattcctagagaac |
9173365 |
T |
|
| Q |
121 |
ttgcttaaatagaaaagaaaattaatgtattacaacaagatcatgttcaaaggccagcatagtaatataaatcaatatataaactaagaaaacatggaga |
220 |
Q |
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| T |
9173364 |
atgcttaaattgaaaagaaaattaatgtattacaataagatcattatcaaagggaaatatagtaatataaatcagtatataaactaagaaaacttggaaa |
9173265 |
T |
|
| Q |
221 |
attatgcatttca |
233 |
Q |
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|||||| ||||| |
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| T |
9173264 |
cttatgcttttca |
9173252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 53 - 176
Target Start/End: Original strand, 9165984 - 9166107
Alignment:
| Q |
53 |
agaatgtaaattagtgacatgaatctatcaacttcaatcagcttatatgggtgacattcccaaataacttgcttaaatagaaaagaaaattaatgtatta |
152 |
Q |
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||||||||||||| ||||||| ||||||||||||||||||||||||||||| ||| |||| ||| ||| ||||||||| |||||||||||||||||||| |
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| T |
9165984 |
agaatgtaaattaatgacatgcatctatcaacttcaatcagcttatatgggagacgttcctaaagaacatgcttaaattgaaaagaaaattaatgtattg |
9166083 |
T |
|
| Q |
153 |
caacaagatcatgttcaaaggcca |
176 |
Q |
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|||||||||||| |||||||||| |
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| T |
9166084 |
caacaagatcattatcaaaggcca |
9166107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 169 - 248
Target Start/End: Original strand, 9166127 - 9166206
Alignment:
| Q |
169 |
aaaggccagcatagtaatataaatcaatatataaactaagaaaacatggagaattatgcatttcattttcgaaatacatt |
248 |
Q |
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|||||||| |||||| ||||||||| |||||||||||||||||| |||| |||||||||||||| ||| ||||||||| |
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| T |
9166127 |
aaaggccaatatagtactataaatcagtatataaactaagaaaacttggaaaattatgcatttcaattttaaaatacatt |
9166206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 55 - 176
Target Start/End: Complemental strand, 9239183 - 9239060
Alignment:
| Q |
55 |
aatgtaaattagtgacatgaatctatcaacttcaatcagctt--atatgggtgacattcccaaataacttgcttaaatagaaaagaaaattaatgtatta |
152 |
Q |
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||||||||| | | ||||||| |||||||||| | |||| | ||||||| |||||||||||| || |||||||| ||||||||| | ||||||||| |
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| T |
9239183 |
aatgtaaataaataacatgaacctatcaactttagtcagatataatatgggggacattcccaaagaatatgcttaaactgaaaagaaactcaatgtatta |
9239084 |
T |
|
| Q |
153 |
caacaagatcatgttcaaaggcca |
176 |
Q |
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|||||| ||||| |||||||||| |
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| T |
9239083 |
caacaacatcattatcaaaggcca |
9239060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 69 - 164
Target Start/End: Complemental strand, 9180924 - 9180829
Alignment:
| Q |
69 |
acatgaatctatcaacttcaatcagcttatatgggtgacattcccaaataacttgcttaaatagaaaagaaaattaatgtattacaacaagatcat |
164 |
Q |
| |
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||||| |||||||||||| | || | ||||||||| || ||||||||| ||| |||||||| |||||||| | |||| |||||||||| ||||| |
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| T |
9180924 |
acatggatctatcaactttagtcggattatatgggagatattcccaaagaacatgcttaaacccaaaagaaagtcaatggattacaacaacatcat |
9180829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 124 - 233
Target Start/End: Original strand, 9133389 - 9133493
Alignment:
| Q |
124 |
cttaaatagaaaagaaaattaatgtattacaacaagatcatgttcaaaggccagcatagtaatataaatcaatatataaactaagaaaacatggagaatt |
223 |
Q |
| |
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||||||| ||||||||||| ||||||| ||||||||| |||||| |||| ||||||||||||||| || ||||||| | ||||| || | |||| |
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| T |
9133389 |
cttaaattgaaaagaaaatcaatgtat-----caagatcattatcaaagaccagtttagtaatataaatcagtacataaactcataaaacttgaaaaatt |
9133483 |
T |
|
| Q |
224 |
atgcatttca |
233 |
Q |
| |
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||||||||| |
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| T |
9133484 |
gtgcatttca |
9133493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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